Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Tue Sep 16 14:29:26 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-debugging=yes --with-mpi=1 --with-cc=/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --with-cxx=/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --with-fc=/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --download-f-blas-lapack=/home/hills/seska/packages/petsc/externalpackages/fblaslapacklinpack-3.1.1.tar.gz --download-openmpi=/home/hills/seska/packages/petsc/externalpackages/openmpi-1.6.5.tar.gz --with-parmetis=1 --download-parmetis=/home/hills/seska/packages/petsc/externalpackages/parmetis-4.0.2-p3.tar.gz --with-mumps=1 --download-mumps=/home/hills/seska/packages/petsc/externalpackages/MUMPS_4.10.0-p3.tar.gz --with-scalapack=1 --download-scalapack=/home/hills/seska/packages/petsc/externalpackages/scalapack-2.0.2.tgz --download-blacs=/home/hills/seska/packages/petsc/externalpackages/blacs-dev.tar.gz --with-superlu_dist=1 --download-superlu_dist=/home/hills/seska/packages/petsc/externalpackages/superlu_dist_3.1.tar.gz --with-metis --download-metis=/home/hills/seska/packages/petsc/externalpackages/metis-5.0.2-p3.tar.gz --with-sowing=/home/hills/seska/packages/petsc/externalpackages/sowing-1.1.16d.tar.gz --with-c2html=0 --with-shared-libraries=1 Working directory: /home/hills/seska-hills/packages/petsc-3.4.2 Machine platform: ('Linux', 'riker', '3.8.0-35-generic', '#50-Ubuntu SMP Tue Dec 3 01:24:59 UTC 2013', 'x86_64', 'x86_64') Python version: 2.7.4 (default, Sep 26 2013, 03:20:26) [GCC 4.7.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /home/hills/seska/packages/pdt/x86_64/bin/gdb...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/gdb...not found Checking for program /home/hills/seska/packages/petsc/bin/gdb...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/gdb...not found Checking for program /home/hills/bin/gdb...not found Checking for program /home/hills/seska/bin/gdb...not found Checking for program /home/hills/seska/packages/gid/gdb...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/gdb...not found Checking for program /usr/lib/lightdm/lightdm/gdb...not found Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/dbx...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/dbx...not found Checking for program /home/hills/seska/packages/petsc/bin/dbx...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/dbx...not found Checking for program /home/hills/bin/dbx...not found Checking for program /home/hills/seska/bin/dbx...not found Checking for program /home/hills/seska/packages/gid/dbx...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/dbx...not found Checking for program /usr/lib/lightdm/lightdm/dbx...not found Checking for program /usr/local/sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /usr/local/games/dbx...not found Checking for program /home/hills/dbx...not found Checking for program /home/hills/seska/packages/pdt/x86_64/bin/xdb...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/xdb...not found Checking for program /home/hills/seska/packages/petsc/bin/xdb...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/xdb...not found Checking for program /home/hills/bin/xdb...not found Checking for program /home/hills/seska/bin/xdb...not found Checking for program /home/hills/seska/packages/gid/xdb...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/xdb...not found Checking for program /usr/lib/lightdm/lightdm/xdb...not found Checking for program /usr/local/sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /usr/local/games/xdb...not found Checking for program /home/hills/xdb...not found Checking for program /home/hills/seska/packages/pdt/x86_64/bin/dsymutil...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/dsymutil...not found Checking for program /home/hills/seska/packages/petsc/bin/dsymutil...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/dsymutil...not found Checking for program /home/hills/bin/dsymutil...not found Checking for program /home/hills/seska/bin/dsymutil...not found Checking for program /home/hills/seska/packages/gid/dsymutil...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/dsymutil...not found Checking for program /usr/lib/lightdm/lightdm/dsymutil...not found Checking for program /usr/local/sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /usr/local/games/dsymutil...not found Checking for program /home/hills/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/languages.py:28) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/languages.py:37) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:37) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMake from config.programs(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/programs.py:24) TESTING: configureMake from config.programs(config/BuildSystem/config/programs.py:24) Check various things about make Checking for program /home/hills/seska/packages/pdt/x86_64/bin/make...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/make...not found Checking for program /home/hills/seska/packages/petsc/bin/make...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/make...not found Checking for program /home/hills/bin/make...not found Checking for program /home/hills/seska/bin/make...not found Checking for program /home/hills/seska/packages/gid/make...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/make...not found Checking for program /usr/lib/lightdm/lightdm/make...not found Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/strings...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/strings...not found Checking for program /home/hills/seska/packages/petsc/bin/strings...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/strings...not found Checking for program /home/hills/bin/strings...not found Checking for program /home/hills/seska/bin/strings...not found Checking for program /home/hills/seska/packages/gid/strings...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/strings...not found Checking for program /usr/lib/lightdm/lightdm/strings...not found Checking for program /usr/local/sbin/strings...not found Checking for program /usr/local/bin/strings...not found Checking for program /usr/sbin/strings...not found Checking for program /usr/bin/strings...found Defined make macro "STRINGS" to "/usr/bin/strings" sh: /usr/bin/strings /usr/bin/make Executing: /usr/bin/strings /usr/bin/make sh: /lib64/ld-linux-x86-64.so.2 kfUa librt.so.1 __gmon_start__ _Jv_RegisterClasses clock_gettime libc.so.6 fflush strcpy __rawmemchr __printf_chk fnmatch readdir _IO_putc setlocale fopen strsignal strncmp optind strrchr wait pipe __strdup dcgettext closedir sigprocmask __stack_chk_fail __lxstat unlink realloc abort stdin _exit getpid kill __assert_fail mkstemp strtod strtol feof getloadavg fgets getpwnam calloc strlen sigemptyset memset glob strstr __errno_location chdir memcmp dup2 __fprintf_chk sigaddset ctime putenv stdout fputs lseek memcpy fclose malloc remove __strncpy_chk opendir __ctype_b_loc getenv sscanf optarg stderr alarm getlogin readlink setrlimit getopt_long execvp __fxstat __realpath_chk getcwd fwrite fread gettimeofday sigaction waitpid localtime strchr vfork __vfprintf_chk fdopen qsort __strcpy_chk __ctype_tolower_loc setvbuf fcntl __sprintf_chk bsd_signal __xstat getrlimit memmove bindtextdomain opterr strcmp strerror __libc_start_main ferror stpcpy globfree sysconf __environ __cxa_atexit GLIBC_2.2.5 GLIBC_2.3 GLIBC_2.14 GLIBC_2.4 GLIBC_2.3.4 %z`" %r`" %j`" %b`" %Z`" %R`" %J`" %B`" %:`" %2`" %*`" %"`" %z_" %r_" %j_" %b_" %Z_" %R_" %J_" %B_" %:_" %2_" %*_" %"_" %z^" %r^" %j^" %b^" %Z^" %R^" %J^" %B^" %:^" %2^" %*^" %"^" AWAVI AUATSH =3i" $<=u t%< t =Ai" =Ri" =Ui" ;/t) =\m" =ge" =de" =je" =$m" GmXXXXXXL =[c" =Hc" =T\" =*\" =YY" =(Y" =mc" =lZ" tf~, =vU" tmE1 =0V" =;]" %mR" |$0H \$@H fffff. :)t,H t$ H ATU1 []A\ ffffff. AWAVI AUATI t!<[ I<*t]7! D$@H |$HL l$hH T$XH G(L9 |$HH D$HH |$ I D$8I G*f% D$XH D$xH T$xH |$`E D$`D d$XB D$HL \$Pu] |$XH |$hH D$@@ D$@@ L$(H D$XH t$0H L$@H D$hH \$0H \$(H |$ H \$ H D$8H -j!! D$HH D$PH D$HH \$`H l$hL d$pH D$8H d$8H -H)! D$ H %,)! l$`H \$XL d$hL l$pL t$xL D$0t fff. ATE1 []A\ []A\ []A\ ATUSH []A\ T$`H t$XH T$`H t$XH AWAVAUATA T$8H t$0E1 []A\A]A^A_ t$0L |$8I t$0I t$8K t$ H |$(H \$ H \$(H t$(H |$0A \$ H D$0H t$ H |$8L \$ H l$ 1 \$ H D$8H \$ H AUATUH p(Hc @t/H []A\A] []A\A] ffffff. AWAVAUATUSH t$(M L$(D D d$ L$8M |$01 |$LE Oxt( D|$LH |$,H |$0D |$?L A"t$!u T$ T$ E T$ u! |$0D l$8E \$,E ET$, []A\A]A^A_ l$(H L$ M D$ 1 L$,1 AVAUI ATUH H;D$ []A\A]A^A_ H;D$ AWAVAUATUSH l$ H D;55 D$(D []A\A]A^A_ I;EH fffff. fffff. ffff. fffff. fffff. AUATI ,$H9- []A\A] []A\A] ffff. AVE1 AUATUSH HcD$ D;%# []A\A]A^A_ []A\A]A^A_ AWAVAUATUSH T$ H t$ H []A\A]A^A_ []A\A]A^A_ 8[]A\A]A^A_ ffff. d$ L l$(L t$0H AWAVAUATUL T$,D \$ A t$(L D$,A 8[]A\A]A^A_ AWAVAUE1 ATSH dH34%( [A\A]A^A_] AUATUS uB[]A\A]A^ t1L;%Z l$ L t$(L |$0H tjD;C fff. fffff. fff. AWE1 AVE1 ATU1 D$,D L$ L T$,D T$(E 8[]A\A]A^A_ AUATUH []A\A] t2<$u []A\A] fffff. AWAVAUI ATUSH []A\A]A^A_ t$(H t$ L |$ I l$`H \$XL d$hL l$pL t$xL AWAVAUATUSH L;|$ L9|$ []A\A]A^A_ fffff. AWAVAUATUSH t H; []A\A]A^A_ []A\A]A^A_ AWAVI AUATUSH |$@A |$@H |$@H l$@H D$HL |$@I []A\A]A^A_ |$@H 4$E1 t=H9 d$ L l$(L t$0H U0fA u8E1 fffff. AVAUI [A\A]A^] t2E1 fff. D$ H D$*H l$8H \$0L d$@H fff. AUATUS D$ H T$ H []A\A]A^A_ T$ L T$(H T$0H AWAVAUATUSH D$(H D$ H /t{D T$ D D9|$ D$(H 8[]A\A]A^A_ |$ B 8[]A\A]A^A_ l$(E1 L+l$ #tcH H9l$ tr9r(rOAUATUSH []A\A] []A\A] fffff. ATUH ATE1 []A\A] []A\A] t$ H fff. AWAVAUI ATUSH twE1 tcH;5 t2I9 []A\A]A^A_ ffffff. l$ L d$(L l$0L t$8L |$@H H;5Q l$ L d$(L l$0L t$8L |$@H ffffff. []A\A] fff. fff. H;=A D$ A\ fff. H;=Q []A\ fffff. []A\A] ATUSH []A\A]H t`I9 s+f. []A\ l$ L t$(L |$0H touch: attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES $(MAKE) ${MAKE} kill # commands to execute (built-in): (from `%s', line %lu): %.*s $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o .cc.o .C.o .cpp.o .f.o .p.o .F.o .r.o .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln .l.ln .y.c .l.c @$(RM) $@ $(LEX.l) $< > $@ .F.f .r.f .l.r .S.s $(PREPROCESS.S) $< > $@ .texinfo.info .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% SCCS/s.% ARFLAGS CHECKOUT,v COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi CWEAVE cweave CTANGLE ctangle rm -f LINK.o COMPILE.c LINK.c COMPILE.cc COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t COMPILE.f LINK.f COMPILE.F LINK.F COMPILE.r LINK.r COMPILE.def COMPILE.mod COMPILE.p LINK.p LINK.s COMPILE.s LINK.S COMPILE.S PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F PREPROCESS.r LINT.c OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(COMPILE.c) $(OUTPUT_OPTION) $< $(COMPILE.cc) $(OUTPUT_OPTION) $< $(COMPILE.C) $(OUTPUT_OPTION) $< $(COMPILE.cpp) $(OUTPUT_OPTION) $< $(COMPILE.f) $(OUTPUT_OPTION) $< $(COMPILE.p) $(OUTPUT_OPTION) $< $(COMPILE.F) $(OUTPUT_OPTION) $< $(COMPILE.r) $(OUTPUT_OPTION) $< $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c $(YACC.y) $< mv -f y.tab.c $@ $(PREPROCESS.F) $(OUTPUT_OPTION) $< $(PREPROCESS.r) $(OUTPUT_OPTION) $< $(LEX.l) $< > $@ mv -f lex.yy.r $@ $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) $(CC) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) # Directories # %s: could not be stat'd. files, impossibilities so far. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' file.c *name != '\0' .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d # Not a target: %s:%s | %s # Command-line target. # Also makes: # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Successfully updated. question_flag # Failed to be updated. Current time # Files # files hash-table stats: Commands were specified for file `%s' at %s:%lu, Commands for file `%s' were found by implicit rule search, but `%s' is now considered the same file as `%s'. Commands for `%s' will be ignored in favor of those for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Modification time never checked. # Commands currently running (THIS IS A BUG). # Dependencies commands running (THIS IS A BUG). # Needs to be updated (-q is set). # Invalid value in `update_status' member! %s: Timestamp out of range; substituting %s lookup_file enter_file print_file undefined default environment environment override command line automatic basename addprefix %s:%lu: recursive simple filter %s: '%s' abspath addsuffix notdir filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard wordlist words origin foreach call warning value eval Internal error: func_error: '%s' Cleaning up temporary batch file %s insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 unterminated call to function `%s': missing `%c' Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible implicit prerequisite `%s'. Rejecting impossible rule prerequisite `%s'. Trying implicit prerequisite `%s'. Trying rule prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child 0x%08lx (%s) but no tokens left! Released token for child 0x%08lx (%s). %s (line %d) Bad shell context (!unixy && !batch_mode_shell) cannot enforce load limits on this operating system Estimated system load = %f (actual = %f) (max requested = %f) Putting child 0x%08lx (%s) PID %ld%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child 0x%08lx (%s) PID %ld %s Reaping losing child 0x%08lx PID %ld %s Reaping winning child 0x%08lx PID %ld %s Cleaning up temp batch file %s Removing child 0x%08lx PID %ld%s from chain. Need a job token; we %shave children INTERNAL: no children as we go to sleep on read Obtained token for child 0x%08lx (%s). write jobserver job.c ap <= end \$\{%u\} [%s] Error %d (ignored) *** [%s] Error %d (core dumped) *** [%s] %s%s %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(IFS) /bin/sh vfork cannot enforce load limit: getloadavg (remote) remote_status wait .DELETE_ON_ERROR don't Duplicate the job FD read jobs pipe Read returned EBADF. break case continue exec exit login logout read readonly shift switch test trap umask while start_waiting_job construct_command_argv_internal %sThis program built for %s write MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering directory `%s' %s: Leaving directory `%s' This program built for %s /tmp /usr/share/locale getcwd .VARIABLES .FEATURES archives check-symlink MAKE_RESTARTS MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL %d,%d dup jobserver creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' was not found chdir Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u main.c unlink (temporary file): No targets Updating goal targets.... always-make basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version no-print-directory what-if warn-undefined-variables quiet stop new-file assume-new assume-old max-load dry-run recon Options: %sGNU Make %s %sCopyright (C) 2006 Free Software Foundation, Inc. %sThis is free software; see the source for copying conditions. %sThere is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A %sPARTICULAR PURPOSE. %sThis program built for %s (%s) # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name %s: Entering an unknown directory %s: Leaving an unknown directory %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `-%c' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s (%s) Report bugs to target-specific order-only second-expansion else-if unknown debug level specification `%s' Makefile from standard input specified twice. internal error: multiple --jobserver-fds options internal error: invalid --jobserver-fds string `%s' warning: -jN forced in submake: disabling jobserver mode. warning: jobserver unavailable: using -j1. Add `+' to parent make rule. Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. .DEFAULT_GOAL contains more than one target No targets specified and no makefile found warning: Clock skew detected. Your build may be incomplete. Couldn't change back to original directory. -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from commands. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any commands; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no commands; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo commands. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. main $(-*-command-variables-*-) %s: %s[%u]: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s virtual memory exhausted write error: %s write error warning: NUL character seen; rest of line ignored Extraneous text after `endef' directive missing `endef', unterminated `define' Extraneous text after `%s' directive only one `else' per conditional prerequisites cannot be defined in command scripts mixed implicit and static pattern rules mixed implicit and normal rules target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding commands for target `%s' warning: ignoring old commands for target `%s' commands commence before first target (did you mean TAB instead of 8 spaces?) Malformed target-specific variable definition target pattern contains no `%%' define endef ifdef ifndef ifeq ifneq else endif extraneous `%s' .POSIX .SECONDEXPANSION $(HOME) HOME /usr/include .INCLUDE_DIRS invalid syntax in conditional extraneous `endef' empty variable name empty `override' directive invalid `override' directive unexport vpath -include sinclude missing rule before commands missing separator%s read.c *p2 != '\0' v != 0 missing target pattern multiple target patterns missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) GNUmakefile Makefile /usr/gnu/include /usr/local/include eval record_target_var lstat: readlink: $(strip $(.LIBPATTERNS)) %s/%s touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. remake.c Nothing to be done for `%s'. `%s' is up to date. /usr/lib/x86_64-linux-gnu /usr/lib /usr/local/lib %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s .LIBPATTERNS element `%s' is not a pattern Warning: File `%s' has modification time %.2g s in the future Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default commands for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No commands for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. Commands of `%s' are being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 update_file_1 A(%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules wrong! %u != %u Y@strcache.c best->bytesfree > len %s # of strcache buffers: %d %s # of strings in strcache: %d %s strcache size: total = %d / max = %d / min = %d / avg = %d %s strcache free: total = %d / max = %d / min = %d / avg = %d add_string environment under -e (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) variable.c %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) # Variables %s : pop_variable_scope current_variable_set_list->next != ((void *)0) # variable set hash-table stats: # Pattern-specific Variable Values # No pattern-specific variable values. # %u pattern-specific variable values x86_64-pc-linux-gnu 3.81 $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths # No `vpath' search paths. vpath %s %s%c # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %ld bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% ;*3$" .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh #;"*?[]&|<>(){}$`^~! -c eval\ \"set\ x\;\ shift\;\ Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} module multiprocessing found 8 cores: using make_np = 5 Defined make macro "MAKE_NP" to "5" ================================================================================ TEST configureMkdir from config.programs(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/programs.py:111) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:111) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/hills/seska/packages/pdt/x86_64/bin/mkdir...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/mkdir...not found Checking for program /home/hills/seska/packages/petsc/bin/mkdir...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/mkdir...not found Checking for program /home/hills/bin/mkdir...not found Checking for program /home/hills/seska/bin/mkdir...not found Checking for program /home/hills/seska/packages/gid/mkdir...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/mkdir...not found Checking for program /usr/lib/lightdm/lightdm/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/programs.py:133) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:133) Check for the programs needed to build and run PETSc Checking for program /home/hills/seska/packages/pdt/x86_64/bin/sh...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/sh...not found Checking for program /home/hills/seska/packages/petsc/bin/sh...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/sh...not found Checking for program /home/hills/bin/sh...not found Checking for program /home/hills/seska/bin/sh...not found Checking for program /home/hills/seska/packages/gid/sh...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/sh...not found Checking for program /usr/lib/lightdm/lightdm/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/sed...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/sed...not found Checking for program /home/hills/seska/packages/petsc/bin/sed...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/sed...not found Checking for program /home/hills/bin/sed...not found Checking for program /home/hills/seska/bin/sed...not found Checking for program /home/hills/seska/packages/gid/sed...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/sed...not found Checking for program /usr/lib/lightdm/lightdm/sed...not found Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" All intermediate test results are stored in /tmp/petsc-h9mPvE All intermediate test results are stored in /tmp/petsc-h9mPvE/config.programs sh: /bin/sed -i s/sed/sd/g "/tmp/petsc-h9mPvE/config.programs/sed1" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-h9mPvE/config.programs/sed1" sh: Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/mv...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/mv...not found Checking for program /home/hills/seska/packages/petsc/bin/mv...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/mv...not found Checking for program /home/hills/bin/mv...not found Checking for program /home/hills/seska/bin/mv...not found Checking for program /home/hills/seska/packages/gid/mv...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/mv...not found Checking for program /usr/lib/lightdm/lightdm/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/cp...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/cp...not found Checking for program /home/hills/seska/packages/petsc/bin/cp...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/cp...not found Checking for program /home/hills/bin/cp...not found Checking for program /home/hills/seska/bin/cp...not found Checking for program /home/hills/seska/packages/gid/cp...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/cp...not found Checking for program /usr/lib/lightdm/lightdm/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/grep...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/grep...not found Checking for program /home/hills/seska/packages/petsc/bin/grep...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/grep...not found Checking for program /home/hills/bin/grep...not found Checking for program /home/hills/seska/bin/grep...not found Checking for program /home/hills/seska/packages/gid/grep...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/grep...not found Checking for program /usr/lib/lightdm/lightdm/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/rm...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/rm...not found Checking for program /home/hills/seska/packages/petsc/bin/rm...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/rm...not found Checking for program /home/hills/bin/rm...not found Checking for program /home/hills/seska/bin/rm...not found Checking for program /home/hills/seska/packages/gid/rm...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/rm...not found Checking for program /usr/lib/lightdm/lightdm/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/diff...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/diff...not found Checking for program /home/hills/seska/packages/petsc/bin/diff...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/diff...not found Checking for program /home/hills/bin/diff...not found Checking for program /home/hills/seska/bin/diff...not found Checking for program /home/hills/seska/packages/gid/diff...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/diff...not found Checking for program /usr/lib/lightdm/lightdm/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/tmp/petsc-h9mPvE/config.programs/diff1" "/tmp/petsc-h9mPvE/config.programs/diff2" Executing: "/usr/bin/diff" -w "/tmp/petsc-h9mPvE/config.programs/diff1" "/tmp/petsc-h9mPvE/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/hills/ps...not found Checking for program /home/hills/seska/packages/pdt/x86_64/bin/gzip...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/gzip...not found Checking for program /home/hills/seska/packages/petsc/bin/gzip...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/gzip...not found Checking for program /home/hills/bin/gzip...not found Checking for program /home/hills/seska/bin/gzip...not found Checking for program /home/hills/seska/packages/gid/gzip...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/gzip...not found Checking for program /usr/lib/lightdm/lightdm/gzip...not found Checking for program /usr/local/sbin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/sbin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /sbin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureGit from config.sourceControl(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /home/hills/seska/packages/pdt/x86_64/bin/git...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/git...not found Checking for program /home/hills/seska/packages/petsc/bin/git...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/git...not found Checking for program /home/hills/bin/git...not found Checking for program /home/hills/seska/bin/git...not found Checking for program /home/hills/seska/packages/gid/git...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/git...not found Checking for program /usr/lib/lightdm/lightdm/git...not found Checking for program /usr/local/sbin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/sbin/git...not found Checking for program /usr/bin/git...not found Checking for program /sbin/git...not found Checking for program /bin/git...not found Checking for program /usr/games/git...not found Checking for program /usr/local/games/git...not found Checking for program /home/hills/git...not found ================================================================================ TEST configureMercurial from config.sourceControl(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /home/hills/seska/packages/pdt/x86_64/bin/hg...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/hg...not found Checking for program /home/hills/seska/packages/petsc/bin/hg...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/hg...not found Checking for program /home/hills/bin/hg...not found Checking for program /home/hills/seska/bin/hg...not found Checking for program /home/hills/seska/packages/gid/hg...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/hg...not found Checking for program /usr/lib/lightdm/lightdm/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /sbin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/games/hg...not found Checking for program /usr/local/games/hg...not found Checking for program /home/hills/hg...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /home/hills/seska/packages/pdt/x86_64/bin/cvs...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/cvs...not found Checking for program /home/hills/seska/packages/petsc/bin/cvs...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/cvs...not found Checking for program /home/hills/bin/cvs...not found Checking for program /home/hills/seska/bin/cvs...not found Checking for program /home/hills/seska/packages/gid/cvs...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/cvs...not found Checking for program /usr/lib/lightdm/lightdm/cvs...not found Checking for program /usr/local/sbin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/sbin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /sbin/cvs...not found Checking for program /bin/cvs...not found Checking for program /usr/games/cvs...not found Checking for program /usr/local/games/cvs...not found Checking for program /home/hills/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /home/hills/seska/packages/pdt/x86_64/bin/svn...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/svn...not found Checking for program /home/hills/seska/packages/petsc/bin/svn...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/svn...not found Checking for program /home/hills/bin/svn...not found Checking for program /home/hills/seska/bin/svn...not found Checking for program /home/hills/seska/packages/gid/svn...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/svn...not found Checking for program /usr/lib/lightdm/lightdm/svn...not found Checking for program /usr/local/sbin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/sbin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /sbin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/games/svn...not found Checking for program /usr/local/games/svn...not found Checking for program /home/hills/svn...not found ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jul, 02, 2013" #define PETSC_VERSION_GIT "a071802d3efee8b987703a6ce2cf5d9a25fa8160" #define PETSC_VERSION_DATE_GIT "2013-07-02 09:33:06 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/hills/seska/packages/petsc" Defined "DIR" to ""/home/hills/seska/packages/petsc"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/petscdir.py:77) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:77) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/petscdir.py:84) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:84) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST printEnvVariables from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1504) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1504) **** printenv **** XAUTHORITY=/home/hills/.Xauthority NO_PROXY=localhost,127.0.0.0/8 http_proxy=http://127.0.0.1:3128/ FTP_PROXY=http://127.0.0.1:3128/ LESSOPEN=| /usr/bin/lesspipe %s LOGNAME=hills USER=hills PATH=/home/hills/seska/packages/pdt/x86_64/bin:/home/hills/seska/packages/tau/x86_64/bin:/home/hills/seska/packages/petsc/bin:/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin:/home/hills/bin:/home/hills/seska/bin:/home/hills/seska/packages/gid:/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin:/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games SESKADIR=/home/hills/seska GNOME_KEYRING_CONTROL=/run/user/hills/keyring-SPKX9V DISPLAY=:0 SSH_AGENT_PID=1989 LANG=en_US.UTF-8 TERM=xterm SHELL=/bin/bash XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XDG_SESSION_COOKIE=a0f88417cc0521fa9abb37d753344234-1410440601.683445-1085422004 SESSION_MANAGER=local/riker:@/tmp/.ICE-unix/1944,unix/riker:/tmp/.ICE-unix/1944 SHLVL=1 MANDATORY_PATH=/usr/share/gconf/ubuntu.mandatory.path PWD=/home/hills/seska/packages/petsc TEXTDOMAIN=im-config https_proxy=http://127.0.0.1:3128/ COMPIZ_CONFIG_PROFILE=ubuntu WINDOWID=54525957 PETSC_DIR=/home/hills/seska/packages/petsc GPG_AGENT_INFO=/run/user/hills/keyring-SPKX9V/gpg:0:1 HOME=/home/hills no_proxy=localhost,127.0.0.0/8 COMPIZ_BIN_PATH=/usr/bin/ XDG_RUNTIME_DIR=/run/user/hills SSH_AUTH_SOCK=/run/user/hills/keyring-SPKX9V/ssh ftp_proxy=http://127.0.0.1:3128/ GDMSESSION=ubuntu TEXTDOMAINDIR=/usr/share/locale/ GNOME_KEYRING_PID=1933 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 LESSCLOSE=/usr/bin/lesspipe %s %s XDG_CURRENT_DESKTOP=Unity DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-ETvjF3yDfe,guid=87573e298c475dba954d471254119d9a _=./configure DEFAULTS_PATH=/usr/share/gconf/ubuntu.default.path DESKTOP_SESSION=ubuntu XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg GTK_MODULES=overlay-scrollbar UBUNTU_MENUPROXY=libappmenu.so OLDPWD=/home/hills/seska/packages/tau HTTP_PROXY=http://127.0.0.1:3128/ TAU_MAKEFILE=/home/hills/seska/packages/tau/x86_64/lib/Makefile.tau-mpi-pdt HTTPS_PROXY=http://127.0.0.1:3128/ PETSC_ARCH=linux-gnu-cxx-opt COLORTERM=gnome-terminal GNOME_DESKTOP_SESSION_ID=this-is-deprecated LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: XDG_DATA_DIRS=/usr/share/ubuntu:/usr/share/gnome:/usr/local/share/:/usr/share/ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1511) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1511) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1476) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1476) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1495) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1495) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:525) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:525) Locate a functional C compiler Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh...found Defined make macro "CC" to "/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh" Pushing language C All intermediate test results are stored in /tmp/petsc-h9mPvE/config.setCompilers sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:560) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:560) Locate a functional C preprocessor Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh...found Defined make macro "CPP" to "/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E" Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 492 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 512 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 529 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 577 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 605 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 711 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 770 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 807 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 895 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 947 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 952 "/usr/include/stdlib.h" 2 3 4 # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:594) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:594) Locate a functional CUDA compiler Checking for program /home/hills/seska/packages/pdt/x86_64/bin/nvcc...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/nvcc...not found Checking for program /home/hills/seska/packages/petsc/bin/nvcc...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/nvcc...not found Checking for program /home/hills/bin/nvcc...not found Checking for program /home/hills/seska/bin/nvcc...not found Checking for program /home/hills/seska/packages/gid/nvcc...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/nvcc...not found Checking for program /usr/lib/lightdm/lightdm/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /home/hills/nvcc...not found Checking for program /home/hills/seska/packages/petsc/bin/win32fe/nvcc...not found Checking for program /home/hills/seska/packages/pdt/x86_64/bin/nvcc...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/nvcc...not found Checking for program /home/hills/seska/packages/petsc/bin/nvcc...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/nvcc...not found Checking for program /home/hills/bin/nvcc...not found Checking for program /home/hills/seska/bin/nvcc...not found Checking for program /home/hills/seska/packages/gid/nvcc...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/nvcc...not found Checking for program /usr/lib/lightdm/lightdm/nvcc...not found Checking for program /usr/local/sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/local/games/nvcc...not found Checking for program /home/hills/nvcc...not found Checking for program /home/hills/seska/packages/petsc/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:632) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:632) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:735) Locate a functional Cxx compiler Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh...found Defined make macro "CXX" to "/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh" Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:773) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:773) Locate a functional Cxx preprocessor Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh...found Defined make macro "CXXCPP" to "/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E" Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: # 1 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.cc" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-h9mPvE/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-h9mPvE/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.7/cstdlib" 1 3 # 41 "/usr/include/c++/4.7/cstdlib" 3 # 42 "/usr/include/c++/4.7/cstdlib" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/c++config.h" 1 3 # 171 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 414 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/c++config.h" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/os_defines.h" 1 3 # 40 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 41 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/os_defines.h" 2 3 # 415 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/c++config.h" 2 3 # 1 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/cpu_defines.h" 1 3 # 418 "/usr/include/x86_64-linux-gnu/c++/4.7/./bits/c++config.h" 2 3 # 44 "/usr/include/c++/4.7/cstdlib" 2 3 # 66 "/usr/include/c++/4.7/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 32 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 235 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 236 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 54 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 } # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 } # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 492 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__, __alloc_size__ (2))); extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 605 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 629 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 651 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 673 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 683 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 693 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 705 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (const char *__command) ; extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 807 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 895 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 952 "/usr/include/stdlib.h" 2 3 4 # 964 "/usr/include/stdlib.h" 3 4 } # 67 "/usr/include/c++/4.7/cstdlib" 2 3 # 98 "/usr/include/c++/4.7/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 160 "/usr/include/c++/4.7/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 195 "/usr/include/c++/4.7/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::abs; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-h9mPvE/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:882) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:882) Locate a functional Fortran compiler Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh...found Defined make macro "FC" to "/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh" Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:901) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:901) Make sure fortran comment "!" works Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:964) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:964) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries Trying C compiler flag -PIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Possible ERROR while running linker: gcc: error: unrecognized command line option ‘-PIC’ gcc: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt ret = 256 error message = {gcc: error: unrecognized command line option ‘-PIC’ gcc: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting linker flag -PIC due to nonzero status from link Rejecting C linker flag -PIC due to Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt gcc: error: unrecognized command line option ‘-PIC’ gcc: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries Trying Cxx compiler flag -PIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Possible ERROR while running linker: g++: error: unrecognized command line option ‘-PIC’ g++: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt ret = 256 error message = {g++: error: unrecognized command line option ‘-PIC’ g++: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 } Pushing language CXX Popping language CXX in /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting linker flag -PIC due to nonzero status from link Rejecting Cxx linker flag -PIC due to Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt g++: error: unrecognized command line option ‘-PIC’ g++: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries Trying FC compiler flag -PIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Possible ERROR while running linker: gfortran: error: unrecognized command line option ‘-PIC’ gfortran: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt ret = 256 error message = {gfortran: error: unrecognized command line option ‘-PIC’ gfortran: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 } Pushing language FC Popping language FC in /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Source: program main end Rejecting linker flag -PIC due to nonzero status from link Rejecting FC linker flag -PIC due to Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.setCompilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -PIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt gfortran: error: unrecognized command line option ‘-PIC’ gfortran: error: unrecognized command line option ‘-PIC’ make: *** [all] Error 1 Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils for Ubuntu) 2.23.2 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils for Ubuntu) 2.23.2 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /home/hills/seska/packages/pdt/x86_64/bin/ar...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/ar...not found Checking for program /home/hills/seska/packages/petsc/bin/ar...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ar...not found Checking for program /home/hills/bin/ar...not found Checking for program /home/hills/seska/bin/ar...not found Checking for program /home/hills/seska/packages/gid/ar...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ar...not found Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/ranlib...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/ranlib...not found Checking for program /home/hills/seska/packages/petsc/bin/ranlib...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ranlib...not found Checking for program /home/hills/bin/ranlib...not found Checking for program /home/hills/seska/bin/ranlib...not found Checking for program /home/hills/seska/packages/gid/ranlib...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ranlib...not found Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a /tmp/petsc-h9mPvE/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a /tmp/petsc-h9mPvE/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib -c /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib -c /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a sh: Possible ERROR while running ranlib: error message = {/usr/bin/ranlib: invalid option -- 'c' } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils for Ubuntu) 2.23.2 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils for Ubuntu) 2.23.2 Copyright 2012 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /home/hills/seska/packages/pdt/x86_64/bin/ar...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/ar...not found Checking for program /home/hills/seska/packages/petsc/bin/ar...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ar...not found Checking for program /home/hills/bin/ar...not found Checking for program /home/hills/seska/bin/ar...not found Checking for program /home/hills/seska/packages/gid/ar...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ar...not found Checking for program /usr/lib/lightdm/lightdm/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/hills/seska/packages/pdt/x86_64/bin/ranlib...not found Checking for program /home/hills/seska/packages/tau/x86_64/bin/ranlib...not found Checking for program /home/hills/seska/packages/petsc/bin/ranlib...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ranlib...not found Checking for program /home/hills/bin/ranlib...not found Checking for program /home/hills/seska/bin/ranlib...not found Checking for program /home/hills/seska/packages/gid/ranlib...not found Checking for program /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/bin/ranlib...not found Checking for program /usr/lib/lightdm/lightdm/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a /tmp/petsc-h9mPvE/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a /tmp/petsc-h9mPvE/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib /tmp/petsc-h9mPvE/config.setCompilers/libconf1.a sh: sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/tmp/petsc-h9mPvE/config.setCompilers -lconf1 Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/tmp/petsc-h9mPvE/config.setCompilers -lconf1 sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/tmp/petsc-h9mPvE/config.setCompilers -lconf1 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1212) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1212) Check that the linker can produce shared libraries sh: uname -s Executing: uname -s sh: Linux Checking shared linker /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh using flags ['-shared'] Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh...found Defined make macro "LD_SHARED" to "/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid C linker flag -shared sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/tmp/petsc-h9mPvE/config.setCompilers -lconftest Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/tmp/petsc-h9mPvE/config.setCompilers -lconftest sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/tmp/petsc-h9mPvE/config.setCompilers -lconftest -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Using shared linker /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh with flags ['-shared'] and library extension so sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1290) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1290) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: uname -s Executing: uname -s sh: Linux sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -V Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -V sh: Trying C linker flag -Wl,-rpath, sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid C linker flag -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 Popping language C Pushing language Cxx sh: uname -s Executing: uname -s sh: Linux sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -V Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -V sh: Trying Cxx linker flag -Wl,-rpath, sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid Cxx linker flag -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 Popping language Cxx Pushing language FC sh: uname -s Executing: uname -s sh: Linux sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -V Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -V sh: Trying FC linker flag -Wl,-rpath, sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid FC linker flag -Wl,-rpath,/home/hills/seska-hills/packages/petsc-3.4.2 Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1325) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1325) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1374) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1374) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-h9mPvE/config.headers sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for function dlopen in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-h9mPvE/config.libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlsym in library ['dl'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlsym(); int main() { dlsym() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlclose in library ['dl'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlclose(); int main() { dlclose() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh using flags ['-shared'] Checking for program /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh...found Defined make macro "DYNAMICLINKER" to "/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Valid C linker flag -shared sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb error message = {/tmp/petsc-h9mPvE/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] /tmp/petsc-h9mPvE/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] /tmp/petsc-h9mPvE/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-h9mPvE/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Using dynamic linker /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/setCompilers.py:1420) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1420) Output module data as defines and substitutions Substituting "CC" with "/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --version Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --version sh: gcc (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3 Copyright (C) 2012 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh gcc (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries Trying C compiler flag -g sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g Popping language C Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --version Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --version sh: g++ (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3 Copyright (C) 2012 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh g++ (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries Trying Cxx compiler flag -g sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --version Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --version sh: GNU Fortran (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3 Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh GNU Fortran (Ubuntu/Linaro 4.7.3-1ubuntu1) 4.7.3 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries Trying FC compiler flag -g sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/arch.py:32) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:32) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""linux-gnu-cxx-opt"" ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(config/PETSc/utilities/bmakeDir.py:26) Makes $PETSC_ARCH and subdirectories if it does not exist Changed persistence directory to linux-gnu-cxx-opt/conf ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/sharedLibraries.py:42) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:42) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/sharedLibraries.py:63) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:63) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/sharedLibraries.py:102) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:102) Checks whether dynamic loading should be used, for which you must - Specify --with-dynamic-loading - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Defined "HAVE_DYNAMIC_LIBRARIES" to "1" Dynamic loading - disabled sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries ================================================================================ TEST checkRestrict from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-h9mPvE/config.compilers sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {/tmp/petsc-h9mPvE/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ /tmp/petsc-h9mPvE/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-h9mPvE/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-h9mPvE/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ /tmp/petsc-h9mPvE/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-h9mPvE/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_RTLD_LAZY" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_RTLD_NOW" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_RTLD_LOCAL" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl sh: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt Possible ERROR while running linker: Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.7.3-1ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --with-system-zlib --enable-objc-gc --with-cloog --enable-cloog-backend=ppl --disable-cloog-version-check --disable-ppl-version-check --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.7.3 (Ubuntu/Linaro 4.7.3-1ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-h9mPvE/config.compilers/conftest' '-v' '-fPIC' '-g' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7/' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-h9mPvE/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ltau-mpi-pdt -lbfd -liberty --export-dynamic -lrt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -lstdc++ -lgcc_s -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o output: Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt error message = {Using built-in specs. COLLECT_GCC=/usr/bin/gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.7.3-1ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --with-system-zlib --enable-objc-gc --with-cloog --enable-cloog-backend=ppl --disable-cloog-version-check --disable-ppl-version-check --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.7.3 (Ubuntu/Linaro 4.7.3-1ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-h9mPvE/config.compilers/conftest' '-v' '-fPIC' '-g' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7/' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-h9mPvE/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ltau-mpi-pdt -lbfd -liberty --export-dynamic -lrt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -lstdc++ -lgcc_s -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg Debug: compilers: Unknown arg Debug: compilers: Checking arg Moving compilers: Unknown arg Moving compilers: Checking arg these compilers: Unknown arg these compilers: Checking arg libraries compilers: Unknown arg libraries compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg end compilers: Unknown arg end compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg line: compilers: Unknown arg line: compilers: Checking arg Debug: compilers: Unknown arg Debug: compilers: Checking arg Linking compilers: Unknown arg Linking compilers: Checking arg with compilers: Unknown arg with compilers: Checking arg TAU compilers: Unknown arg TAU compilers: Checking arg Options compilers: Unknown arg Options compilers: Checking arg Executing> compilers: Unknown arg Executing> compilers: Checking arg /usr/bin/gcc compilers: Unknown arg /usr/bin/gcc compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Found library directory: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -lTauMpi-mpi-pdt compilers: Found library : -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Found library : -lmpi compilers: Checking arg -lmpi_cxx compilers: Found library : -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Found library : -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Found library : -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -ltau-mpi-pdt compilers: Found library : -ltau-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Found library : -lbfd compilers: Checking arg -liberty compilers: Found library : -liberty compilers: Checking arg -Wl,--export-dynamic compilers: Unknown arg -Wl,--export-dynamic compilers: Checking arg -lrt compilers: Found library : -lrt compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Found library directory: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Checking arg -lm compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Found library : -lstdc++ compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/bin/gcc compilers: Unknown arg COLLECT_GCC=/usr/bin/gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs compilers: Checking arg --enable-languages=c,c++,go,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,go,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.7 compilers: Unknown arg --program-suffix=-4.7 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.7 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.7 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --with-cloog compilers: Unknown arg --with-cloog compilers: Checking arg --enable-cloog-backend=ppl compilers: Unknown arg --enable-cloog-backend=ppl compilers: Checking arg --disable-cloog-version-check compilers: Unknown arg --disable-cloog-version-check compilers: Checking arg --disable-ppl-version-check compilers: Unknown arg --disable-ppl-version-check compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.7.3 compilers: Unknown arg 4.7.3 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.7.3-1ubuntu1) compilers: Unknown arg 4.7.3-1ubuntu1) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Found library directory: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Found library directory: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Checking arg -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ltau-mpi-pdt compilers: Checking arg -lbfd compilers: Checking arg -liberty compilers: Checking arg --export-dynamic compilers: Unknown arg --export-dynamic compilers: Checking arg -lrt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -ldl compilers: Checking arg -lm compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link C code with another linker: ['-ldl', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-lTauMpi-mpi-pdt', '-lmpi', '-lmpi_cxx', '-lmpi_f90', '-lmpi_f77', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-ltau-mpi-pdt', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-lbfd', '-liberty', '-lrt', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-lstdc++', '-lgcc_s', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /usr/bin/ld: /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauCAPI.o): undefined reference to symbol 'ceilf@@GLIBC_2.2.5' /usr/bin/ld: note: 'ceilf@@GLIBC_2.2.5' is defined in DSO /lib/x86_64-linux-gnu/libm.so.6 so try adding it to the linker command line /lib/x86_64-linux-gnu/libm.so.6: could not read symbols: Invalid operation collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt error message = {/usr/bin/ld: /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauCAPI.o): undefined reference to symbol 'ceilf@@GLIBC_2.2.5' /usr/bin/ld: note: 'ceilf@@GLIBC_2.2.5' is defined in DSO /lib/x86_64-linux-gnu/libm.so.6 so try adding it to the linker command line /lib/x86_64-linux-gnu/libm.so.6: could not read symbols: Invalid operation collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Valid C linker flag -MMD Testing C compiler flag -MMD sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g -MMD /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g -MMD /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `TauGetMpiRank': TauUnify.cpp:(.text+0x257): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x261): undefined reference to `PMPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_generateSortMap(EventLister*)': TauUnify.cpp:(.text+0x4f0): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x4fd): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x50a): undefined reference to `PMPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_unifyEvents(EventLister*)': TauUnify.cpp:(.text+0x614): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x649): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x656): undefined reference to `PMPI_Comm_size' TauUnify.cpp:(.text+0x72d): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0x782): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x7a1): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x7c2): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0x7e0): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x8e2): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x920): undefined reference to `PMPI_Bcast' TauUnify.cpp:(.text+0xa9d): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb6a): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb84): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xb93): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0xba5): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xd2f): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0xd4a): undefined reference to `ompi_mpi_int' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_nameEPKc[_ZN3MPI3Win8Set_nameEPKc]+0x5): undefined reference to `MPI_Win_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_attrEiPKv[_ZN3MPI3Win8Set_attrEiPKv]+0x5): undefined reference to `MPI_Win_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI3Win8Get_nameEPcRi[_ZNK3MPI3Win8Get_nameEPcRi]+0x5): undefined reference to `MPI_Win_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI3Win11Delete_attrEi[_ZN3MPI3Win11Delete_attrEi]+0x5): undefined reference to `MPI_Win_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Call_errhandler(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win15Call_errhandlerEi[_ZNK3MPI3Win15Call_errhandlerEi]+0x5): undefined reference to `MPI_Win_call_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Wait() const': TauUnify.cpp:(.text._ZNK3MPI3Win4WaitEv[_ZNK3MPI3Win4WaitEv]+0x5): undefined reference to `MPI_Win_wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Unlock(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win6UnlockEi[_ZNK3MPI3Win6UnlockEi]+0x9): undefined reference to `MPI_Win_unlock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Test() const': TauUnify.cpp:(.text._ZNK3MPI3Win4TestEv[_ZNK3MPI3Win4TestEv]+0xe): undefined reference to `MPI_Win_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Start(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5StartERKNS_5GroupEi[_ZNK3MPI3Win5StartERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Put(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Post(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4PostERKNS_5GroupEi[_ZNK3MPI3Win4PostERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_post' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Lock(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4LockEiii[_ZNK3MPI3Win4LockEiii]+0xd): undefined reference to `MPI_Win_lock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI3Win9Get_groupEv[_ZNK3MPI3Win9Get_groupEv]+0x12): undefined reference to `MPI_Win_get_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Fence(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5FenceEi[_ZNK3MPI3Win5FenceEi]+0x9): undefined reference to `MPI_Win_fence' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Complete() const': TauUnify.cpp:(.text._ZNK3MPI3Win8CompleteEv[_ZNK3MPI3Win8CompleteEv]+0x5): undefined reference to `MPI_Win_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Accumulate(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE[_ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE]+0x42): undefined reference to `MPI_Accumulate' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_errhandler(MPI::Errhandler const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE[_ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Win_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI3Win14Get_errhandlerEv[_ZNK3MPI3Win14Get_errhandlerEv]+0x12): undefined reference to `MPI_Win_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Set(char const*, char const*)': TauUnify.cpp:(.text._ZN3MPI4Info3SetEPKcS2_[_ZN3MPI4Info3SetEPKcS2_]+0x5): undefined reference to `MPI_Info_set' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_valuelen(char const*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Info12Get_valuelenEPKcRi[_ZNK3MPI4Info12Get_valuelenEPKcRi]+0xe): undefined reference to `MPI_Info_get_valuelen' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nthkey(int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info10Get_nthkeyEiPc[_ZNK3MPI4Info10Get_nthkeyEiPc]+0x5): undefined reference to `MPI_Info_get_nthkey' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nkeys() const': TauUnify.cpp:(.text._ZNK3MPI4Info9Get_nkeysEv[_ZNK3MPI4Info9Get_nkeysEv]+0xe): undefined reference to `MPI_Info_get_nkeys' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get(char const*, int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info3GetEPKciPc[_ZNK3MPI4Info3GetEPKciPc]+0xe): undefined reference to `MPI_Info_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Free()': TauUnify.cpp:(.text._ZN3MPI4Info4FreeEv[_ZN3MPI4Info4FreeEv]+0x5): undefined reference to `MPI_Info_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Dup() const': TauUnify.cpp:(.text._ZNK3MPI4Info3DupEv[_ZNK3MPI4Info3DupEv]+0x12): undefined reference to `MPI_Info_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Delete(char const*)': TauUnify.cpp:(.text._ZN3MPI4Info6DeleteEPKc[_ZN3MPI4Info6DeleteEPKc]+0x5): undefined reference to `MPI_Info_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_cancelled(bool)': TauUnify.cpp:(.text._ZN3MPI6Status13Set_cancelledEb[_ZN3MPI6Status13Set_cancelledEb]+0x9): undefined reference to `MPI_Status_set_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_elements(MPI::Datatype const&, int)': TauUnify.cpp:(.text._ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi[_ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi]+0x9): undefined reference to `MPI_Status_set_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_elements(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE[_ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Is_cancelled() const': TauUnify.cpp:(.text._ZNK3MPI6Status12Is_cancelledEv[_ZNK3MPI6Status12Is_cancelledEv]+0xe): undefined reference to `MPI_Test_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_count(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status9Get_countERKNS_8DatatypeE[_ZNK3MPI6Status9Get_countERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Errhandler::Free()': TauUnify.cpp:(.text._ZN3MPI10Errhandler4FreeEv[_ZN3MPI10Errhandler4FreeEv]+0x5): undefined reference to `MPI_Errhandler_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Is_commutative() const': TauUnify.cpp:(.text._ZNK3MPI2Op14Is_commutativeEv[_ZNK3MPI2Op14Is_commutativeEv]+0xe): undefined reference to `MPI_Op_commutative' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Reduce_local(void const*, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE[_ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE]+0x14): undefined reference to `MPI_Reduce_local' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Free()': TauUnify.cpp:(.text._ZN3MPI2Op4FreeEv[_ZN3MPI2Op4FreeEv]+0x5): undefined reference to `MPI_Op_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)': TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x18): undefined reference to `ompi_mpi_cxx_op_intercept' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x26): undefined reference to `MPI_Op_create' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x40): undefined reference to `ompi_op_set_cxx_callback' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Free()': TauUnify.cpp:(.text._ZN3MPI5Group4FreeEv[_ZN3MPI5Group4FreeEv]+0x5): undefined reference to `MPI_Group_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_excl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_exclEiPA3_Ki[_ZNK3MPI5Group10Range_exclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_incl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_inclEiPA3_Ki[_ZNK3MPI5Group10Range_inclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Excl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4ExclEiPKi[_ZNK3MPI5Group4ExclEiPKi]+0x19): undefined reference to `MPI_Group_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Incl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4InclEiPKi[_ZNK3MPI5Group4InclEiPKi]+0x19): undefined reference to `MPI_Group_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_rankEv[_ZNK3MPI5Group8Get_rankEv]+0xe): undefined reference to `MPI_Group_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_sizeEv[_ZNK3MPI5Group8Get_sizeEv]+0xe): undefined reference to `MPI_Group_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5SplitEii[_ZNK3MPI9Intercomm5SplitEii]+0x18): undefined reference to `MPI_Comm_split' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm6CreateERKNS_5GroupE[_ZNK3MPI9Intercomm6CreateERKNS_5GroupE]+0x19): undefined reference to `MPI_Comm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Is_inter() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Is_interEv[_ZNK3MPI4Comm8Is_interEv]+0xe): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_group() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm16Get_remote_groupEv[_ZNK3MPI9Intercomm16Get_remote_groupEv]+0x12): undefined reference to `MPI_Comm_remote_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_size() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm15Get_remote_sizeEv[_ZNK3MPI9Intercomm15Get_remote_sizeEv]+0xe): undefined reference to `MPI_Comm_remote_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5CloneEv[_ZNK3MPI9Intercomm5CloneEv]+0xe): undefined reference to `MPI_Comm_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_topology() const': TauUnify.cpp:(.text._ZNK3MPI4Comm12Get_topologyEv[_ZNK3MPI4Comm12Get_topologyEv]+0xe): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Map(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm3MapEiPKiS2_[_ZNK3MPI9Graphcomm3MapEiPKiS2_]+0xe): undefined reference to `MPI_Graph_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm13Get_neighborsEiiPi[_ZNK3MPI9Graphcomm13Get_neighborsEiiPi]+0x5): undefined reference to `MPI_Graph_neighbors' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors_count(int) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm19Get_neighbors_countEi[_ZNK3MPI9Graphcomm19Get_neighbors_countEi]+0xe): undefined reference to `MPI_Graph_neighbors_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_topo(int, int, int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_topoEiiPiS1_[_ZNK3MPI9Graphcomm8Get_topoEiiPiS1_]+0x5): undefined reference to `MPI_Graph_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_dims(int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_dimsEPiS1_[_ZNK3MPI9Graphcomm8Get_dimsEPiS1_]+0x5): undefined reference to `MPI_Graphdims_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Map(int, int const*, bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3MapEiPKiPKb[_ZNK3MPI8Cartcomm3MapEiPKiPKb]+0x65): undefined reference to `MPI_Cart_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_dim() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm7Get_dimEv[_ZNK3MPI8Cartcomm7Get_dimEv]+0xe): undefined reference to `MPI_Cartdim_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Shift(int, int, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5ShiftEiiRiS1_[_ZNK3MPI8Cartcomm5ShiftEiiRiS1_]+0x5): undefined reference to `MPI_Cart_shift' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_coords(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm10Get_coordsEiiPi[_ZNK3MPI8Cartcomm10Get_coordsEiiPi]+0x5): undefined reference to `MPI_Cart_coords' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_cart_rank(int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm13Get_cart_rankEPKi[_ZNK3MPI8Cartcomm13Get_cart_rankEPKi]+0xe): undefined reference to `MPI_Cart_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0x63): undefined reference to `MPI_Cart_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0xbf): undefined reference to `MPI_Cart_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi]+0xb7): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi]+0x38): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi]+0x37): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Connect(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_connect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Accept(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_accept' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_intercomm(int, MPI::Comm const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii[_ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii]+0x23): undefined reference to `MPI_Intercomm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Exscan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Exscan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Scan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Scan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI4Comm11Delete_attrEi[_ZN3MPI4Comm11Delete_attrEi]+0x5): undefined reference to `MPI_Attr_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_attrEiPv[_ZNK3MPI4Comm8Get_attrEiPv]+0xe): undefined reference to `MPI_Attr_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_attr(int, void const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Set_attrEiPKv[_ZNK3MPI4Comm8Set_attrEiPKv]+0x5): undefined reference to `MPI_Attr_put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_errhandler(MPI::Errhandler const&)': TauUnify.cpp:(.text._ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE[_ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Comm_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Get_errhandlerEv[_ZNK3MPI4Comm14Get_errhandlerEv]+0x12): undefined reference to `MPI_Comm_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Abort(int)': TauUnify.cpp:(.text._ZN3MPI4Comm5AbortEi[_ZN3MPI4Comm5AbortEi]+0x5): undefined reference to `MPI_Abort' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI4Comm8Set_nameEPKc[_ZN3MPI4Comm8Set_nameEPKc]+0x5): undefined reference to `MPI_Comm_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_nameEPcRi[_ZNK3MPI4Comm8Get_nameEPcRi]+0x5): undefined reference to `MPI_Comm_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Disconnect()': TauUnify.cpp:(.text._ZN3MPI4Comm10DisconnectEv[_ZN3MPI4Comm10DisconnectEv]+0x5): undefined reference to `MPI_Comm_disconnect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce_scatter(void const*, void*, int*, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE]+0x1c): undefined reference to `MPI_Reduce_scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allreduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Allreduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi[_ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi]+0x28): undefined reference to `MPI_Reduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallw(void const*, int const*, int const*, MPI::Datatype const*, void*, int const*, int const*, MPI::Datatype const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_]+0xda): undefined reference to `MPI_Alltoallw' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallv(void const*, int const*, int const*, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_]+0x3f): undefined reference to `MPI_Alltoallv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoall(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Alltoall' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_[_ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_]+0x32): undefined reference to `MPI_Allgatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Allgather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatterv(void const*, int const*, int const*, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i[_ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i]+0x3d): undefined reference to `MPI_Scatterv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatter(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i[_ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i]+0x3a): undefined reference to `MPI_Gatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Gather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bcast(void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi[_ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi]+0x17): undefined reference to `MPI_Bcast' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Barrier() const': TauUnify.cpp:(.text._ZNK3MPI4Comm7BarrierEv[_ZNK3MPI4Comm7BarrierEv]+0x5): undefined reference to `MPI_Barrier' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Free()': TauUnify.cpp:(.text._ZN3MPI4Comm4FreeEv[_ZN3MPI4Comm4FreeEv]+0x5): undefined reference to `MPI_Comm_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_rankEv[_ZNK3MPI4Comm8Get_rankEv]+0xe): undefined reference to `MPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_sizeEv[_ZNK3MPI4Comm8Get_sizeEv]+0xe): undefined reference to `MPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Get_groupEv[_ZNK3MPI4Comm9Get_groupEv]+0x12): undefined reference to `MPI_Comm_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii]+0x38): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE]+0x34): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii]+0x56): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE]+0x54): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv_init(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Recv_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Rsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ssend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Bsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Send_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEii[_ZNK3MPI4Comm5ProbeEii]+0xd): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEiiRNS_6StatusE[_ZNK3MPI4Comm5ProbeEiiRNS_6StatusE]+0xf): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEii[_ZNK3MPI4Comm6IprobeEii]+0x17): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEiiRNS_6StatusE[_ZNK3MPI4Comm6IprobeEiiRNS_6StatusE]+0x18): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irecv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Issend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Issend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ibsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ibsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Isend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Isend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Rsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Ssend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Bsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii]+0x26): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE]+0x20): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Send' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Grequest::Complete()': TauUnify.cpp:(.text._ZN3MPI8Grequest8CompleteEv[_ZN3MPI8Grequest8CompleteEv]+0x5): undefined reference to `MPI_Grequest_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status() const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusEv[_ZNK3MPI7Request10Get_statusEv]+0x10): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status(MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusERNS_6StatusE[_ZNK3MPI7Request10Get_statusERNS_6StatusE]+0x1f): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Prequest::Start()': TauUnify.cpp:(.text._ZN3MPI8Prequest5StartEv[_ZN3MPI8Prequest5StartEv]+0x5): undefined reference to `MPI_Start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Cancel() const': TauUnify.cpp:(.text._ZNK3MPI7Request6CancelEv[_ZNK3MPI7Request6CancelEv]+0x5): undefined reference to `MPI_Cancel' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test()': TauUnify.cpp:(.text._ZN3MPI7Request4TestEv[_ZN3MPI7Request4TestEv]+0x10): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4TestERNS_6StatusE[_ZN3MPI7Request4TestERNS_6StatusE]+0x12): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Free()': TauUnify.cpp:(.text._ZN3MPI7Request4FreeEv[_ZN3MPI7Request4FreeEv]+0x5): undefined reference to `MPI_Request_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait()': TauUnify.cpp:(.text._ZN3MPI7Request4WaitEv[_ZN3MPI7Request4WaitEv]+0x7): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4WaitERNS_6StatusE[_ZN3MPI7Request4WaitERNS_6StatusE]+0x9): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_nameEPKc[_ZN3MPI8Datatype8Set_nameEPKc]+0x5): undefined reference to `MPI_Type_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_attrEiPKv[_ZN3MPI8Datatype8Set_attrEiPKv]+0x5): undefined reference to `MPI_Type_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_nameEPcRi[_ZNK3MPI8Datatype8Get_nameEPcRi]+0x5): undefined reference to `MPI_Type_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_envelope(int&, int&, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_[_ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_]+0x5): undefined reference to `MPI_Type_get_envelope' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_contents(int, int, int, int*, long*, MPI::Datatype*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_[_ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_]+0x68): undefined reference to `MPI_Type_get_contents' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_attrEiPv[_ZNK3MPI8Datatype8Get_attrEiPv]+0xe): undefined reference to `MPI_Type_get_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI8Datatype11Delete_attrEi[_ZN3MPI8Datatype11Delete_attrEi]+0x5): undefined reference to `MPI_Type_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Dup() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype3DupEv[_ZNK3MPI8Datatype3DupEv]+0x12): undefined reference to `MPI_Type_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_darray(int, int, int, int const*, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i[_ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i]+0x43): undefined reference to `MPI_Type_create_darray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_subarray(int, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i[_ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i]+0x29): undefined reference to `MPI_Type_create_subarray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack_external(char const*, void const*, long, long&, void*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi[_ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi]+0x21): undefined reference to `MPI_Unpack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external_size(char const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype18Pack_external_sizeEPKci[_ZNK3MPI8Datatype18Pack_external_sizeEPKci]+0x16): undefined reference to `MPI_Pack_external_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external(char const*, void const*, int, void*, long, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl[_ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl]+0x10): undefined reference to `MPI_Pack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_size(int, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE[_ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE]+0x16): undefined reference to `MPI_Pack_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE]+0x1e): undefined reference to `MPI_Unpack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE]+0x1b): undefined reference to `MPI_Pack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Commit()': TauUnify.cpp:(.text._ZN3MPI8Datatype6CommitEv[_ZN3MPI8Datatype6CommitEv]+0x5): undefined reference to `MPI_Type_commit' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_true_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Get_true_extentERlS1_[_ZNK3MPI8Datatype15Get_true_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_true_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype10Get_extentERlS1_[_ZNK3MPI8Datatype10Get_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_sizeEv[_ZNK3MPI8Datatype8Get_sizeEv]+0xe): undefined reference to `MPI_Type_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_resized(long, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_resizedEll[_ZNK3MPI8Datatype14Create_resizedEll]+0x1b): undefined reference to `MPI_Type_create_resized' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed_block(int, int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype20Create_indexed_blockEiiPKi[_ZNK3MPI8Datatype20Create_indexed_blockEiiPKi]+0x1b): undefined reference to `MPI_Type_create_indexed_block' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hvector(int, int, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_hvectorEiil[_ZNK3MPI8Datatype14Create_hvectorEiil]+0x1b): undefined reference to `MPI_Type_create_hvector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hindexed(int, int const*, long const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_hindexedEiPKiPKl[_ZNK3MPI8Datatype15Create_hindexedEiPKiPKl]+0x1d): undefined reference to `MPI_Type_create_hindexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_indexedEiPKiS2_[_ZNK3MPI8Datatype14Create_indexedEiPKiS2_]+0x1d): undefined reference to `MPI_Type_indexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_vector(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_vectorEiii[_ZNK3MPI8Datatype13Create_vectorEiii]+0x1b): undefined reference to `MPI_Type_vector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_contiguous(int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype17Create_contiguousEi[_ZNK3MPI8Datatype17Create_contiguousEi]+0x14): undefined reference to `MPI_Type_contiguous' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int, int*)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi]+0xbb): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x27): undefined reference to `MPI_Comm_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x34): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x53): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x1d): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x37): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x56): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x65): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x75): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Merge(bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x25): undefined reference to `MPI_Intercomm_merge' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x32): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x51): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x26): undefined reference to `MPI_Comm_split' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x33): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x52): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x63): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x73): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x21): undefined reference to `MPI_Graph_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x29): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x48): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x5e): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x6b): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Sub(bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x1d): undefined reference to `MPI_Cartdim_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x66): undefined reference to `MPI_Cart_sub' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x7b): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x9c): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xb2): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xc1): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x79): undefined reference to `MPI_Cart_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x8e): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xaf): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xc3): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xd2): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt error message = {/home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `TauGetMpiRank': TauUnify.cpp:(.text+0x257): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x261): undefined reference to `PMPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_generateSortMap(EventLister*)': TauUnify.cpp:(.text+0x4f0): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x4fd): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x50a): undefined reference to `PMPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_unifyEvents(EventLister*)': TauUnify.cpp:(.text+0x614): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x649): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x656): undefined reference to `PMPI_Comm_size' TauUnify.cpp:(.text+0x72d): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0x782): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x7a1): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x7c2): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0x7e0): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x8e2): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x920): undefined reference to `PMPI_Bcast' TauUnify.cpp:(.text+0xa9d): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb6a): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb84): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xb93): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0xba5): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xd2f): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0xd4a): undefined reference to `ompi_mpi_int' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_nameEPKc[_ZN3MPI3Win8Set_nameEPKc]+0x5): undefined reference to `MPI_Win_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_attrEiPKv[_ZN3MPI3Win8Set_attrEiPKv]+0x5): undefined reference to `MPI_Win_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI3Win8Get_nameEPcRi[_ZNK3MPI3Win8Get_nameEPcRi]+0x5): undefined reference to `MPI_Win_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI3Win11Delete_attrEi[_ZN3MPI3Win11Delete_attrEi]+0x5): undefined reference to `MPI_Win_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Call_errhandler(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win15Call_errhandlerEi[_ZNK3MPI3Win15Call_errhandlerEi]+0x5): undefined reference to `MPI_Win_call_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Wait() const': TauUnify.cpp:(.text._ZNK3MPI3Win4WaitEv[_ZNK3MPI3Win4WaitEv]+0x5): undefined reference to `MPI_Win_wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Unlock(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win6UnlockEi[_ZNK3MPI3Win6UnlockEi]+0x9): undefined reference to `MPI_Win_unlock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Test() const': TauUnify.cpp:(.text._ZNK3MPI3Win4TestEv[_ZNK3MPI3Win4TestEv]+0xe): undefined reference to `MPI_Win_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Start(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5StartERKNS_5GroupEi[_ZNK3MPI3Win5StartERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Put(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Post(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4PostERKNS_5GroupEi[_ZNK3MPI3Win4PostERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_post' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Lock(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4LockEiii[_ZNK3MPI3Win4LockEiii]+0xd): undefined reference to `MPI_Win_lock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI3Win9Get_groupEv[_ZNK3MPI3Win9Get_groupEv]+0x12): undefined reference to `MPI_Win_get_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Fence(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5FenceEi[_ZNK3MPI3Win5FenceEi]+0x9): undefined reference to `MPI_Win_fence' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Complete() const': TauUnify.cpp:(.text._ZNK3MPI3Win8CompleteEv[_ZNK3MPI3Win8CompleteEv]+0x5): undefined reference to `MPI_Win_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Accumulate(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE[_ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE]+0x42): undefined reference to `MPI_Accumulate' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_errhandler(MPI::Errhandler const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE[_ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Win_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI3Win14Get_errhandlerEv[_ZNK3MPI3Win14Get_errhandlerEv]+0x12): undefined reference to `MPI_Win_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Set(char const*, char const*)': TauUnify.cpp:(.text._ZN3MPI4Info3SetEPKcS2_[_ZN3MPI4Info3SetEPKcS2_]+0x5): undefined reference to `MPI_Info_set' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_valuelen(char const*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Info12Get_valuelenEPKcRi[_ZNK3MPI4Info12Get_valuelenEPKcRi]+0xe): undefined reference to `MPI_Info_get_valuelen' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nthkey(int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info10Get_nthkeyEiPc[_ZNK3MPI4Info10Get_nthkeyEiPc]+0x5): undefined reference to `MPI_Info_get_nthkey' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nkeys() const': TauUnify.cpp:(.text._ZNK3MPI4Info9Get_nkeysEv[_ZNK3MPI4Info9Get_nkeysEv]+0xe): undefined reference to `MPI_Info_get_nkeys' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get(char const*, int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info3GetEPKciPc[_ZNK3MPI4Info3GetEPKciPc]+0xe): undefined reference to `MPI_Info_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Free()': TauUnify.cpp:(.text._ZN3MPI4Info4FreeEv[_ZN3MPI4Info4FreeEv]+0x5): undefined reference to `MPI_Info_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Dup() const': TauUnify.cpp:(.text._ZNK3MPI4Info3DupEv[_ZNK3MPI4Info3DupEv]+0x12): undefined reference to `MPI_Info_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Delete(char const*)': TauUnify.cpp:(.text._ZN3MPI4Info6DeleteEPKc[_ZN3MPI4Info6DeleteEPKc]+0x5): undefined reference to `MPI_Info_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_cancelled(bool)': TauUnify.cpp:(.text._ZN3MPI6Status13Set_cancelledEb[_ZN3MPI6Status13Set_cancelledEb]+0x9): undefined reference to `MPI_Status_set_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_elements(MPI::Datatype const&, int)': TauUnify.cpp:(.text._ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi[_ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi]+0x9): undefined reference to `MPI_Status_set_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_elements(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE[_ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Is_cancelled() const': TauUnify.cpp:(.text._ZNK3MPI6Status12Is_cancelledEv[_ZNK3MPI6Status12Is_cancelledEv]+0xe): undefined reference to `MPI_Test_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_count(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status9Get_countERKNS_8DatatypeE[_ZNK3MPI6Status9Get_countERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Errhandler::Free()': TauUnify.cpp:(.text._ZN3MPI10Errhandler4FreeEv[_ZN3MPI10Errhandler4FreeEv]+0x5): undefined reference to `MPI_Errhandler_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Is_commutative() const': TauUnify.cpp:(.text._ZNK3MPI2Op14Is_commutativeEv[_ZNK3MPI2Op14Is_commutativeEv]+0xe): undefined reference to `MPI_Op_commutative' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Reduce_local(void const*, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE[_ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE]+0x14): undefined reference to `MPI_Reduce_local' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Free()': TauUnify.cpp:(.text._ZN3MPI2Op4FreeEv[_ZN3MPI2Op4FreeEv]+0x5): undefined reference to `MPI_Op_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)': TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x18): undefined reference to `ompi_mpi_cxx_op_intercept' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x26): undefined reference to `MPI_Op_create' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x40): undefined reference to `ompi_op_set_cxx_callback' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Free()': TauUnify.cpp:(.text._ZN3MPI5Group4FreeEv[_ZN3MPI5Group4FreeEv]+0x5): undefined reference to `MPI_Group_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_excl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_exclEiPA3_Ki[_ZNK3MPI5Group10Range_exclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_incl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_inclEiPA3_Ki[_ZNK3MPI5Group10Range_inclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Excl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4ExclEiPKi[_ZNK3MPI5Group4ExclEiPKi]+0x19): undefined reference to `MPI_Group_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Incl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4InclEiPKi[_ZNK3MPI5Group4InclEiPKi]+0x19): undefined reference to `MPI_Group_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_rankEv[_ZNK3MPI5Group8Get_rankEv]+0xe): undefined reference to `MPI_Group_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_sizeEv[_ZNK3MPI5Group8Get_sizeEv]+0xe): undefined reference to `MPI_Group_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5SplitEii[_ZNK3MPI9Intercomm5SplitEii]+0x18): undefined reference to `MPI_Comm_split' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm6CreateERKNS_5GroupE[_ZNK3MPI9Intercomm6CreateERKNS_5GroupE]+0x19): undefined reference to `MPI_Comm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Is_inter() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Is_interEv[_ZNK3MPI4Comm8Is_interEv]+0xe): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_group() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm16Get_remote_groupEv[_ZNK3MPI9Intercomm16Get_remote_groupEv]+0x12): undefined reference to `MPI_Comm_remote_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_size() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm15Get_remote_sizeEv[_ZNK3MPI9Intercomm15Get_remote_sizeEv]+0xe): undefined reference to `MPI_Comm_remote_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5CloneEv[_ZNK3MPI9Intercomm5CloneEv]+0xe): undefined reference to `MPI_Comm_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_topology() const': TauUnify.cpp:(.text._ZNK3MPI4Comm12Get_topologyEv[_ZNK3MPI4Comm12Get_topologyEv]+0xe): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Map(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm3MapEiPKiS2_[_ZNK3MPI9Graphcomm3MapEiPKiS2_]+0xe): undefined reference to `MPI_Graph_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm13Get_neighborsEiiPi[_ZNK3MPI9Graphcomm13Get_neighborsEiiPi]+0x5): undefined reference to `MPI_Graph_neighbors' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors_count(int) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm19Get_neighbors_countEi[_ZNK3MPI9Graphcomm19Get_neighbors_countEi]+0xe): undefined reference to `MPI_Graph_neighbors_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_topo(int, int, int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_topoEiiPiS1_[_ZNK3MPI9Graphcomm8Get_topoEiiPiS1_]+0x5): undefined reference to `MPI_Graph_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_dims(int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_dimsEPiS1_[_ZNK3MPI9Graphcomm8Get_dimsEPiS1_]+0x5): undefined reference to `MPI_Graphdims_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Map(int, int const*, bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3MapEiPKiPKb[_ZNK3MPI8Cartcomm3MapEiPKiPKb]+0x65): undefined reference to `MPI_Cart_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_dim() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm7Get_dimEv[_ZNK3MPI8Cartcomm7Get_dimEv]+0xe): undefined reference to `MPI_Cartdim_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Shift(int, int, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5ShiftEiiRiS1_[_ZNK3MPI8Cartcomm5ShiftEiiRiS1_]+0x5): undefined reference to `MPI_Cart_shift' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_coords(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm10Get_coordsEiiPi[_ZNK3MPI8Cartcomm10Get_coordsEiiPi]+0x5): undefined reference to `MPI_Cart_coords' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_cart_rank(int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm13Get_cart_rankEPKi[_ZNK3MPI8Cartcomm13Get_cart_rankEPKi]+0xe): undefined reference to `MPI_Cart_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0x63): undefined reference to `MPI_Cart_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0xbf): undefined reference to `MPI_Cart_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi]+0xb7): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi]+0x38): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi]+0x37): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Connect(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_connect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Accept(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_accept' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_intercomm(int, MPI::Comm const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii[_ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii]+0x23): undefined reference to `MPI_Intercomm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Exscan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Exscan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Scan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Scan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI4Comm11Delete_attrEi[_ZN3MPI4Comm11Delete_attrEi]+0x5): undefined reference to `MPI_Attr_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_attrEiPv[_ZNK3MPI4Comm8Get_attrEiPv]+0xe): undefined reference to `MPI_Attr_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_attr(int, void const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Set_attrEiPKv[_ZNK3MPI4Comm8Set_attrEiPKv]+0x5): undefined reference to `MPI_Attr_put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_errhandler(MPI::Errhandler const&)': TauUnify.cpp:(.text._ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE[_ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Comm_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Get_errhandlerEv[_ZNK3MPI4Comm14Get_errhandlerEv]+0x12): undefined reference to `MPI_Comm_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Abort(int)': TauUnify.cpp:(.text._ZN3MPI4Comm5AbortEi[_ZN3MPI4Comm5AbortEi]+0x5): undefined reference to `MPI_Abort' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI4Comm8Set_nameEPKc[_ZN3MPI4Comm8Set_nameEPKc]+0x5): undefined reference to `MPI_Comm_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_nameEPcRi[_ZNK3MPI4Comm8Get_nameEPcRi]+0x5): undefined reference to `MPI_Comm_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Disconnect()': TauUnify.cpp:(.text._ZN3MPI4Comm10DisconnectEv[_ZN3MPI4Comm10DisconnectEv]+0x5): undefined reference to `MPI_Comm_disconnect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce_scatter(void const*, void*, int*, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE]+0x1c): undefined reference to `MPI_Reduce_scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allreduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Allreduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi[_ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi]+0x28): undefined reference to `MPI_Reduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallw(void const*, int const*, int const*, MPI::Datatype const*, void*, int const*, int const*, MPI::Datatype const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_]+0xda): undefined reference to `MPI_Alltoallw' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallv(void const*, int const*, int const*, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_]+0x3f): undefined reference to `MPI_Alltoallv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoall(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Alltoall' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_[_ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_]+0x32): undefined reference to `MPI_Allgatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Allgather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatterv(void const*, int const*, int const*, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i[_ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i]+0x3d): undefined reference to `MPI_Scatterv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatter(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i[_ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i]+0x3a): undefined reference to `MPI_Gatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Gather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bcast(void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi[_ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi]+0x17): undefined reference to `MPI_Bcast' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Barrier() const': TauUnify.cpp:(.text._ZNK3MPI4Comm7BarrierEv[_ZNK3MPI4Comm7BarrierEv]+0x5): undefined reference to `MPI_Barrier' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Free()': TauUnify.cpp:(.text._ZN3MPI4Comm4FreeEv[_ZN3MPI4Comm4FreeEv]+0x5): undefined reference to `MPI_Comm_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_rankEv[_ZNK3MPI4Comm8Get_rankEv]+0xe): undefined reference to `MPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_sizeEv[_ZNK3MPI4Comm8Get_sizeEv]+0xe): undefined reference to `MPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Get_groupEv[_ZNK3MPI4Comm9Get_groupEv]+0x12): undefined reference to `MPI_Comm_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii]+0x38): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE]+0x34): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii]+0x56): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE]+0x54): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv_init(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Recv_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Rsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ssend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Bsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Send_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEii[_ZNK3MPI4Comm5ProbeEii]+0xd): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEiiRNS_6StatusE[_ZNK3MPI4Comm5ProbeEiiRNS_6StatusE]+0xf): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEii[_ZNK3MPI4Comm6IprobeEii]+0x17): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEiiRNS_6StatusE[_ZNK3MPI4Comm6IprobeEiiRNS_6StatusE]+0x18): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irecv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Issend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Issend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ibsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ibsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Isend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Isend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Rsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Ssend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Bsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii]+0x26): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE]+0x20): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Send' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Grequest::Complete()': TauUnify.cpp:(.text._ZN3MPI8Grequest8CompleteEv[_ZN3MPI8Grequest8CompleteEv]+0x5): undefined reference to `MPI_Grequest_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status() const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusEv[_ZNK3MPI7Request10Get_statusEv]+0x10): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status(MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusERNS_6StatusE[_ZNK3MPI7Request10Get_statusERNS_6StatusE]+0x1f): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Prequest::Start()': TauUnify.cpp:(.text._ZN3MPI8Prequest5StartEv[_ZN3MPI8Prequest5StartEv]+0x5): undefined reference to `MPI_Start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Cancel() const': TauUnify.cpp:(.text._ZNK3MPI7Request6CancelEv[_ZNK3MPI7Request6CancelEv]+0x5): undefined reference to `MPI_Cancel' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test()': TauUnify.cpp:(.text._ZN3MPI7Request4TestEv[_ZN3MPI7Request4TestEv]+0x10): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4TestERNS_6StatusE[_ZN3MPI7Request4TestERNS_6StatusE]+0x12): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Free()': TauUnify.cpp:(.text._ZN3MPI7Request4FreeEv[_ZN3MPI7Request4FreeEv]+0x5): undefined reference to `MPI_Request_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait()': TauUnify.cpp:(.text._ZN3MPI7Request4WaitEv[_ZN3MPI7Request4WaitEv]+0x7): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4WaitERNS_6StatusE[_ZN3MPI7Request4WaitERNS_6StatusE]+0x9): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_nameEPKc[_ZN3MPI8Datatype8Set_nameEPKc]+0x5): undefined reference to `MPI_Type_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_attrEiPKv[_ZN3MPI8Datatype8Set_attrEiPKv]+0x5): undefined reference to `MPI_Type_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_nameEPcRi[_ZNK3MPI8Datatype8Get_nameEPcRi]+0x5): undefined reference to `MPI_Type_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_envelope(int&, int&, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_[_ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_]+0x5): undefined reference to `MPI_Type_get_envelope' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_contents(int, int, int, int*, long*, MPI::Datatype*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_[_ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_]+0x68): undefined reference to `MPI_Type_get_contents' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_attrEiPv[_ZNK3MPI8Datatype8Get_attrEiPv]+0xe): undefined reference to `MPI_Type_get_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI8Datatype11Delete_attrEi[_ZN3MPI8Datatype11Delete_attrEi]+0x5): undefined reference to `MPI_Type_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Dup() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype3DupEv[_ZNK3MPI8Datatype3DupEv]+0x12): undefined reference to `MPI_Type_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_darray(int, int, int, int const*, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i[_ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i]+0x43): undefined reference to `MPI_Type_create_darray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_subarray(int, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i[_ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i]+0x29): undefined reference to `MPI_Type_create_subarray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack_external(char const*, void const*, long, long&, void*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi[_ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi]+0x21): undefined reference to `MPI_Unpack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external_size(char const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype18Pack_external_sizeEPKci[_ZNK3MPI8Datatype18Pack_external_sizeEPKci]+0x16): undefined reference to `MPI_Pack_external_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external(char const*, void const*, int, void*, long, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl[_ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl]+0x10): undefined reference to `MPI_Pack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_size(int, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE[_ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE]+0x16): undefined reference to `MPI_Pack_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE]+0x1e): undefined reference to `MPI_Unpack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE]+0x1b): undefined reference to `MPI_Pack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Commit()': TauUnify.cpp:(.text._ZN3MPI8Datatype6CommitEv[_ZN3MPI8Datatype6CommitEv]+0x5): undefined reference to `MPI_Type_commit' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_true_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Get_true_extentERlS1_[_ZNK3MPI8Datatype15Get_true_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_true_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype10Get_extentERlS1_[_ZNK3MPI8Datatype10Get_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_sizeEv[_ZNK3MPI8Datatype8Get_sizeEv]+0xe): undefined reference to `MPI_Type_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_resized(long, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_resizedEll[_ZNK3MPI8Datatype14Create_resizedEll]+0x1b): undefined reference to `MPI_Type_create_resized' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed_block(int, int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype20Create_indexed_blockEiiPKi[_ZNK3MPI8Datatype20Create_indexed_blockEiiPKi]+0x1b): undefined reference to `MPI_Type_create_indexed_block' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hvector(int, int, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_hvectorEiil[_ZNK3MPI8Datatype14Create_hvectorEiil]+0x1b): undefined reference to `MPI_Type_create_hvector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hindexed(int, int const*, long const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_hindexedEiPKiPKl[_ZNK3MPI8Datatype15Create_hindexedEiPKiPKl]+0x1d): undefined reference to `MPI_Type_create_hindexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_indexedEiPKiS2_[_ZNK3MPI8Datatype14Create_indexedEiPKiS2_]+0x1d): undefined reference to `MPI_Type_indexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_vector(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_vectorEiii[_ZNK3MPI8Datatype13Create_vectorEiii]+0x1b): undefined reference to `MPI_Type_vector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_contiguous(int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype17Create_contiguousEi[_ZNK3MPI8Datatype17Create_contiguousEi]+0x14): undefined reference to `MPI_Type_contiguous' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int, int*)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi]+0xbb): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x27): undefined reference to `MPI_Comm_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x34): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x53): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x1d): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x37): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x56): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x65): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x75): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Merge(bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x25): undefined reference to `MPI_Intercomm_merge' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x32): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x51): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x26): undefined reference to `MPI_Comm_split' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x33): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x52): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x63): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x73): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x21): undefined reference to `MPI_Graph_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x29): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x48): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x5e): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x6b): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Sub(bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x1d): undefined reference to `MPI_Cartdim_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x66): undefined reference to `MPI_Cart_sub' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x7b): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x9c): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xb2): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xc1): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x79): undefined reference to `MPI_Cart_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x8e): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xaf): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xc3): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xd2): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language CXX Popping language CXX in /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Valid Cxx linker flag -MMD Testing Cxx compiler flag -MMD sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -g -fPIC -MMD /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -g -fPIC -MMD /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Pushing language FC Trying FC compiler flag -MMD sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `TauGetMpiRank': TauUnify.cpp:(.text+0x257): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x261): undefined reference to `PMPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_generateSortMap(EventLister*)': TauUnify.cpp:(.text+0x4f0): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x4fd): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x50a): undefined reference to `PMPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_unifyEvents(EventLister*)': TauUnify.cpp:(.text+0x614): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x649): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x656): undefined reference to `PMPI_Comm_size' TauUnify.cpp:(.text+0x72d): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0x782): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x7a1): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x7c2): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0x7e0): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x8e2): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x920): undefined reference to `PMPI_Bcast' TauUnify.cpp:(.text+0xa9d): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb6a): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb84): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xb93): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0xba5): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xd2f): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0xd4a): undefined reference to `ompi_mpi_int' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_nameEPKc[_ZN3MPI3Win8Set_nameEPKc]+0x5): undefined reference to `MPI_Win_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_attrEiPKv[_ZN3MPI3Win8Set_attrEiPKv]+0x5): undefined reference to `MPI_Win_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI3Win8Get_nameEPcRi[_ZNK3MPI3Win8Get_nameEPcRi]+0x5): undefined reference to `MPI_Win_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI3Win11Delete_attrEi[_ZN3MPI3Win11Delete_attrEi]+0x5): undefined reference to `MPI_Win_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Call_errhandler(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win15Call_errhandlerEi[_ZNK3MPI3Win15Call_errhandlerEi]+0x5): undefined reference to `MPI_Win_call_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Wait() const': TauUnify.cpp:(.text._ZNK3MPI3Win4WaitEv[_ZNK3MPI3Win4WaitEv]+0x5): undefined reference to `MPI_Win_wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Unlock(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win6UnlockEi[_ZNK3MPI3Win6UnlockEi]+0x9): undefined reference to `MPI_Win_unlock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Test() const': TauUnify.cpp:(.text._ZNK3MPI3Win4TestEv[_ZNK3MPI3Win4TestEv]+0xe): undefined reference to `MPI_Win_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Start(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5StartERKNS_5GroupEi[_ZNK3MPI3Win5StartERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Put(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Post(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4PostERKNS_5GroupEi[_ZNK3MPI3Win4PostERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_post' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Lock(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4LockEiii[_ZNK3MPI3Win4LockEiii]+0xd): undefined reference to `MPI_Win_lock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI3Win9Get_groupEv[_ZNK3MPI3Win9Get_groupEv]+0x12): undefined reference to `MPI_Win_get_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Fence(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5FenceEi[_ZNK3MPI3Win5FenceEi]+0x9): undefined reference to `MPI_Win_fence' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Complete() const': TauUnify.cpp:(.text._ZNK3MPI3Win8CompleteEv[_ZNK3MPI3Win8CompleteEv]+0x5): undefined reference to `MPI_Win_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Accumulate(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE[_ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE]+0x42): undefined reference to `MPI_Accumulate' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_errhandler(MPI::Errhandler const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE[_ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Win_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI3Win14Get_errhandlerEv[_ZNK3MPI3Win14Get_errhandlerEv]+0x12): undefined reference to `MPI_Win_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Set(char const*, char const*)': TauUnify.cpp:(.text._ZN3MPI4Info3SetEPKcS2_[_ZN3MPI4Info3SetEPKcS2_]+0x5): undefined reference to `MPI_Info_set' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_valuelen(char const*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Info12Get_valuelenEPKcRi[_ZNK3MPI4Info12Get_valuelenEPKcRi]+0xe): undefined reference to `MPI_Info_get_valuelen' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nthkey(int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info10Get_nthkeyEiPc[_ZNK3MPI4Info10Get_nthkeyEiPc]+0x5): undefined reference to `MPI_Info_get_nthkey' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nkeys() const': TauUnify.cpp:(.text._ZNK3MPI4Info9Get_nkeysEv[_ZNK3MPI4Info9Get_nkeysEv]+0xe): undefined reference to `MPI_Info_get_nkeys' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get(char const*, int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info3GetEPKciPc[_ZNK3MPI4Info3GetEPKciPc]+0xe): undefined reference to `MPI_Info_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Free()': TauUnify.cpp:(.text._ZN3MPI4Info4FreeEv[_ZN3MPI4Info4FreeEv]+0x5): undefined reference to `MPI_Info_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Dup() const': TauUnify.cpp:(.text._ZNK3MPI4Info3DupEv[_ZNK3MPI4Info3DupEv]+0x12): undefined reference to `MPI_Info_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Delete(char const*)': TauUnify.cpp:(.text._ZN3MPI4Info6DeleteEPKc[_ZN3MPI4Info6DeleteEPKc]+0x5): undefined reference to `MPI_Info_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_cancelled(bool)': TauUnify.cpp:(.text._ZN3MPI6Status13Set_cancelledEb[_ZN3MPI6Status13Set_cancelledEb]+0x9): undefined reference to `MPI_Status_set_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_elements(MPI::Datatype const&, int)': TauUnify.cpp:(.text._ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi[_ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi]+0x9): undefined reference to `MPI_Status_set_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_elements(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE[_ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Is_cancelled() const': TauUnify.cpp:(.text._ZNK3MPI6Status12Is_cancelledEv[_ZNK3MPI6Status12Is_cancelledEv]+0xe): undefined reference to `MPI_Test_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_count(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status9Get_countERKNS_8DatatypeE[_ZNK3MPI6Status9Get_countERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Errhandler::Free()': TauUnify.cpp:(.text._ZN3MPI10Errhandler4FreeEv[_ZN3MPI10Errhandler4FreeEv]+0x5): undefined reference to `MPI_Errhandler_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Is_commutative() const': TauUnify.cpp:(.text._ZNK3MPI2Op14Is_commutativeEv[_ZNK3MPI2Op14Is_commutativeEv]+0xe): undefined reference to `MPI_Op_commutative' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Reduce_local(void const*, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE[_ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE]+0x14): undefined reference to `MPI_Reduce_local' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Free()': TauUnify.cpp:(.text._ZN3MPI2Op4FreeEv[_ZN3MPI2Op4FreeEv]+0x5): undefined reference to `MPI_Op_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)': TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x18): undefined reference to `ompi_mpi_cxx_op_intercept' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x26): undefined reference to `MPI_Op_create' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x40): undefined reference to `ompi_op_set_cxx_callback' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Free()': TauUnify.cpp:(.text._ZN3MPI5Group4FreeEv[_ZN3MPI5Group4FreeEv]+0x5): undefined reference to `MPI_Group_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_excl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_exclEiPA3_Ki[_ZNK3MPI5Group10Range_exclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_incl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_inclEiPA3_Ki[_ZNK3MPI5Group10Range_inclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Excl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4ExclEiPKi[_ZNK3MPI5Group4ExclEiPKi]+0x19): undefined reference to `MPI_Group_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Incl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4InclEiPKi[_ZNK3MPI5Group4InclEiPKi]+0x19): undefined reference to `MPI_Group_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_rankEv[_ZNK3MPI5Group8Get_rankEv]+0xe): undefined reference to `MPI_Group_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_sizeEv[_ZNK3MPI5Group8Get_sizeEv]+0xe): undefined reference to `MPI_Group_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5SplitEii[_ZNK3MPI9Intercomm5SplitEii]+0x18): undefined reference to `MPI_Comm_split' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm6CreateERKNS_5GroupE[_ZNK3MPI9Intercomm6CreateERKNS_5GroupE]+0x19): undefined reference to `MPI_Comm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Is_inter() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Is_interEv[_ZNK3MPI4Comm8Is_interEv]+0xe): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_group() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm16Get_remote_groupEv[_ZNK3MPI9Intercomm16Get_remote_groupEv]+0x12): undefined reference to `MPI_Comm_remote_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_size() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm15Get_remote_sizeEv[_ZNK3MPI9Intercomm15Get_remote_sizeEv]+0xe): undefined reference to `MPI_Comm_remote_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5CloneEv[_ZNK3MPI9Intercomm5CloneEv]+0xe): undefined reference to `MPI_Comm_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_topology() const': TauUnify.cpp:(.text._ZNK3MPI4Comm12Get_topologyEv[_ZNK3MPI4Comm12Get_topologyEv]+0xe): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Map(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm3MapEiPKiS2_[_ZNK3MPI9Graphcomm3MapEiPKiS2_]+0xe): undefined reference to `MPI_Graph_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm13Get_neighborsEiiPi[_ZNK3MPI9Graphcomm13Get_neighborsEiiPi]+0x5): undefined reference to `MPI_Graph_neighbors' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors_count(int) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm19Get_neighbors_countEi[_ZNK3MPI9Graphcomm19Get_neighbors_countEi]+0xe): undefined reference to `MPI_Graph_neighbors_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_topo(int, int, int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_topoEiiPiS1_[_ZNK3MPI9Graphcomm8Get_topoEiiPiS1_]+0x5): undefined reference to `MPI_Graph_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_dims(int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_dimsEPiS1_[_ZNK3MPI9Graphcomm8Get_dimsEPiS1_]+0x5): undefined reference to `MPI_Graphdims_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Map(int, int const*, bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3MapEiPKiPKb[_ZNK3MPI8Cartcomm3MapEiPKiPKb]+0x65): undefined reference to `MPI_Cart_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_dim() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm7Get_dimEv[_ZNK3MPI8Cartcomm7Get_dimEv]+0xe): undefined reference to `MPI_Cartdim_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Shift(int, int, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5ShiftEiiRiS1_[_ZNK3MPI8Cartcomm5ShiftEiiRiS1_]+0x5): undefined reference to `MPI_Cart_shift' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_coords(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm10Get_coordsEiiPi[_ZNK3MPI8Cartcomm10Get_coordsEiiPi]+0x5): undefined reference to `MPI_Cart_coords' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_cart_rank(int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm13Get_cart_rankEPKi[_ZNK3MPI8Cartcomm13Get_cart_rankEPKi]+0xe): undefined reference to `MPI_Cart_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0x63): undefined reference to `MPI_Cart_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0xbf): undefined reference to `MPI_Cart_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi]+0xb7): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi]+0x38): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi]+0x37): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Connect(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_connect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Accept(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_accept' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_intercomm(int, MPI::Comm const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii[_ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii]+0x23): undefined reference to `MPI_Intercomm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Exscan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Exscan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Scan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Scan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI4Comm11Delete_attrEi[_ZN3MPI4Comm11Delete_attrEi]+0x5): undefined reference to `MPI_Attr_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_attrEiPv[_ZNK3MPI4Comm8Get_attrEiPv]+0xe): undefined reference to `MPI_Attr_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_attr(int, void const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Set_attrEiPKv[_ZNK3MPI4Comm8Set_attrEiPKv]+0x5): undefined reference to `MPI_Attr_put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_errhandler(MPI::Errhandler const&)': TauUnify.cpp:(.text._ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE[_ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Comm_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Get_errhandlerEv[_ZNK3MPI4Comm14Get_errhandlerEv]+0x12): undefined reference to `MPI_Comm_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Abort(int)': TauUnify.cpp:(.text._ZN3MPI4Comm5AbortEi[_ZN3MPI4Comm5AbortEi]+0x5): undefined reference to `MPI_Abort' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI4Comm8Set_nameEPKc[_ZN3MPI4Comm8Set_nameEPKc]+0x5): undefined reference to `MPI_Comm_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_nameEPcRi[_ZNK3MPI4Comm8Get_nameEPcRi]+0x5): undefined reference to `MPI_Comm_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Disconnect()': TauUnify.cpp:(.text._ZN3MPI4Comm10DisconnectEv[_ZN3MPI4Comm10DisconnectEv]+0x5): undefined reference to `MPI_Comm_disconnect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce_scatter(void const*, void*, int*, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE]+0x1c): undefined reference to `MPI_Reduce_scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allreduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Allreduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi[_ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi]+0x28): undefined reference to `MPI_Reduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallw(void const*, int const*, int const*, MPI::Datatype const*, void*, int const*, int const*, MPI::Datatype const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_]+0xda): undefined reference to `MPI_Alltoallw' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallv(void const*, int const*, int const*, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_]+0x3f): undefined reference to `MPI_Alltoallv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoall(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Alltoall' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_[_ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_]+0x32): undefined reference to `MPI_Allgatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Allgather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatterv(void const*, int const*, int const*, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i[_ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i]+0x3d): undefined reference to `MPI_Scatterv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatter(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i[_ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i]+0x3a): undefined reference to `MPI_Gatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Gather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bcast(void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi[_ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi]+0x17): undefined reference to `MPI_Bcast' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Barrier() const': TauUnify.cpp:(.text._ZNK3MPI4Comm7BarrierEv[_ZNK3MPI4Comm7BarrierEv]+0x5): undefined reference to `MPI_Barrier' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Free()': TauUnify.cpp:(.text._ZN3MPI4Comm4FreeEv[_ZN3MPI4Comm4FreeEv]+0x5): undefined reference to `MPI_Comm_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_rankEv[_ZNK3MPI4Comm8Get_rankEv]+0xe): undefined reference to `MPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_sizeEv[_ZNK3MPI4Comm8Get_sizeEv]+0xe): undefined reference to `MPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Get_groupEv[_ZNK3MPI4Comm9Get_groupEv]+0x12): undefined reference to `MPI_Comm_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii]+0x38): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE]+0x34): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii]+0x56): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE]+0x54): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv_init(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Recv_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Rsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ssend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Bsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Send_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEii[_ZNK3MPI4Comm5ProbeEii]+0xd): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEiiRNS_6StatusE[_ZNK3MPI4Comm5ProbeEiiRNS_6StatusE]+0xf): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEii[_ZNK3MPI4Comm6IprobeEii]+0x17): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEiiRNS_6StatusE[_ZNK3MPI4Comm6IprobeEiiRNS_6StatusE]+0x18): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irecv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Issend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Issend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ibsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ibsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Isend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Isend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Rsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Ssend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Bsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii]+0x26): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE]+0x20): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Send' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Grequest::Complete()': TauUnify.cpp:(.text._ZN3MPI8Grequest8CompleteEv[_ZN3MPI8Grequest8CompleteEv]+0x5): undefined reference to `MPI_Grequest_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status() const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusEv[_ZNK3MPI7Request10Get_statusEv]+0x10): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status(MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusERNS_6StatusE[_ZNK3MPI7Request10Get_statusERNS_6StatusE]+0x1f): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Prequest::Start()': TauUnify.cpp:(.text._ZN3MPI8Prequest5StartEv[_ZN3MPI8Prequest5StartEv]+0x5): undefined reference to `MPI_Start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Cancel() const': TauUnify.cpp:(.text._ZNK3MPI7Request6CancelEv[_ZNK3MPI7Request6CancelEv]+0x5): undefined reference to `MPI_Cancel' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test()': TauUnify.cpp:(.text._ZN3MPI7Request4TestEv[_ZN3MPI7Request4TestEv]+0x10): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4TestERNS_6StatusE[_ZN3MPI7Request4TestERNS_6StatusE]+0x12): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Free()': TauUnify.cpp:(.text._ZN3MPI7Request4FreeEv[_ZN3MPI7Request4FreeEv]+0x5): undefined reference to `MPI_Request_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait()': TauUnify.cpp:(.text._ZN3MPI7Request4WaitEv[_ZN3MPI7Request4WaitEv]+0x7): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4WaitERNS_6StatusE[_ZN3MPI7Request4WaitERNS_6StatusE]+0x9): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_nameEPKc[_ZN3MPI8Datatype8Set_nameEPKc]+0x5): undefined reference to `MPI_Type_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_attrEiPKv[_ZN3MPI8Datatype8Set_attrEiPKv]+0x5): undefined reference to `MPI_Type_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_nameEPcRi[_ZNK3MPI8Datatype8Get_nameEPcRi]+0x5): undefined reference to `MPI_Type_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_envelope(int&, int&, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_[_ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_]+0x5): undefined reference to `MPI_Type_get_envelope' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_contents(int, int, int, int*, long*, MPI::Datatype*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_[_ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_]+0x68): undefined reference to `MPI_Type_get_contents' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_attrEiPv[_ZNK3MPI8Datatype8Get_attrEiPv]+0xe): undefined reference to `MPI_Type_get_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI8Datatype11Delete_attrEi[_ZN3MPI8Datatype11Delete_attrEi]+0x5): undefined reference to `MPI_Type_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Dup() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype3DupEv[_ZNK3MPI8Datatype3DupEv]+0x12): undefined reference to `MPI_Type_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_darray(int, int, int, int const*, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i[_ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i]+0x43): undefined reference to `MPI_Type_create_darray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_subarray(int, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i[_ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i]+0x29): undefined reference to `MPI_Type_create_subarray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack_external(char const*, void const*, long, long&, void*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi[_ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi]+0x21): undefined reference to `MPI_Unpack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external_size(char const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype18Pack_external_sizeEPKci[_ZNK3MPI8Datatype18Pack_external_sizeEPKci]+0x16): undefined reference to `MPI_Pack_external_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external(char const*, void const*, int, void*, long, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl[_ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl]+0x10): undefined reference to `MPI_Pack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_size(int, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE[_ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE]+0x16): undefined reference to `MPI_Pack_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE]+0x1e): undefined reference to `MPI_Unpack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE]+0x1b): undefined reference to `MPI_Pack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Commit()': TauUnify.cpp:(.text._ZN3MPI8Datatype6CommitEv[_ZN3MPI8Datatype6CommitEv]+0x5): undefined reference to `MPI_Type_commit' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_true_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Get_true_extentERlS1_[_ZNK3MPI8Datatype15Get_true_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_true_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype10Get_extentERlS1_[_ZNK3MPI8Datatype10Get_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_sizeEv[_ZNK3MPI8Datatype8Get_sizeEv]+0xe): undefined reference to `MPI_Type_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_resized(long, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_resizedEll[_ZNK3MPI8Datatype14Create_resizedEll]+0x1b): undefined reference to `MPI_Type_create_resized' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed_block(int, int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype20Create_indexed_blockEiiPKi[_ZNK3MPI8Datatype20Create_indexed_blockEiiPKi]+0x1b): undefined reference to `MPI_Type_create_indexed_block' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hvector(int, int, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_hvectorEiil[_ZNK3MPI8Datatype14Create_hvectorEiil]+0x1b): undefined reference to `MPI_Type_create_hvector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hindexed(int, int const*, long const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_hindexedEiPKiPKl[_ZNK3MPI8Datatype15Create_hindexedEiPKiPKl]+0x1d): undefined reference to `MPI_Type_create_hindexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_indexedEiPKiS2_[_ZNK3MPI8Datatype14Create_indexedEiPKiS2_]+0x1d): undefined reference to `MPI_Type_indexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_vector(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_vectorEiii[_ZNK3MPI8Datatype13Create_vectorEiii]+0x1b): undefined reference to `MPI_Type_vector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_contiguous(int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype17Create_contiguousEi[_ZNK3MPI8Datatype17Create_contiguousEi]+0x14): undefined reference to `MPI_Type_contiguous' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int, int*)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi]+0xbb): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x27): undefined reference to `MPI_Comm_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x34): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x53): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x1d): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x37): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x56): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x65): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x75): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Merge(bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x25): undefined reference to `MPI_Intercomm_merge' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x32): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x51): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x26): undefined reference to `MPI_Comm_split' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x33): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x52): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x63): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x73): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x21): undefined reference to `MPI_Graph_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x29): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x48): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x5e): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x6b): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Sub(bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x1d): undefined reference to `MPI_Cartdim_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x66): undefined reference to `MPI_Cart_sub' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x7b): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x9c): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xb2): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xc1): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x79): undefined reference to `MPI_Cart_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x8e): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xaf): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xc3): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xd2): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt error message = {/home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `TauGetMpiRank': TauUnify.cpp:(.text+0x257): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x261): undefined reference to `PMPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_generateSortMap(EventLister*)': TauUnify.cpp:(.text+0x4f0): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x4fd): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x50a): undefined reference to `PMPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `Tau_unify_unifyEvents(EventLister*)': TauUnify.cpp:(.text+0x614): undefined reference to `ompi_mpi_comm_world' TauUnify.cpp:(.text+0x649): undefined reference to `PMPI_Comm_rank' TauUnify.cpp:(.text+0x656): undefined reference to `PMPI_Comm_size' TauUnify.cpp:(.text+0x72d): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0x782): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x7a1): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x7c2): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0x7e0): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0x8e2): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0x920): undefined reference to `PMPI_Bcast' TauUnify.cpp:(.text+0xa9d): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb6a): undefined reference to `PMPI_Recv' TauUnify.cpp:(.text+0xb84): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xb93): undefined reference to `ompi_mpi_char' TauUnify.cpp:(.text+0xba5): undefined reference to `PMPI_Send' TauUnify.cpp:(.text+0xd2f): undefined reference to `ompi_mpi_int' TauUnify.cpp:(.text+0xd4a): undefined reference to `ompi_mpi_int' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_nameEPKc[_ZN3MPI3Win8Set_nameEPKc]+0x5): undefined reference to `MPI_Win_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI3Win8Set_attrEiPKv[_ZN3MPI3Win8Set_attrEiPKv]+0x5): undefined reference to `MPI_Win_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI3Win8Get_nameEPcRi[_ZNK3MPI3Win8Get_nameEPcRi]+0x5): undefined reference to `MPI_Win_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI3Win11Delete_attrEi[_ZN3MPI3Win11Delete_attrEi]+0x5): undefined reference to `MPI_Win_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Call_errhandler(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win15Call_errhandlerEi[_ZNK3MPI3Win15Call_errhandlerEi]+0x5): undefined reference to `MPI_Win_call_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Wait() const': TauUnify.cpp:(.text._ZNK3MPI3Win4WaitEv[_ZNK3MPI3Win4WaitEv]+0x5): undefined reference to `MPI_Win_wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Unlock(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win6UnlockEi[_ZNK3MPI3Win6UnlockEi]+0x9): undefined reference to `MPI_Win_unlock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Test() const': TauUnify.cpp:(.text._ZNK3MPI3Win4TestEv[_ZNK3MPI3Win4TestEv]+0xe): undefined reference to `MPI_Win_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Start(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5StartERKNS_5GroupEi[_ZNK3MPI3Win5StartERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Put(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3PutEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Post(MPI::Group const&, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4PostERKNS_5GroupEi[_ZNK3MPI3Win4PostERKNS_5GroupEi]+0xd): undefined reference to `MPI_Win_post' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Lock(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI3Win4LockEiii[_ZNK3MPI3Win4LockEiii]+0xd): undefined reference to `MPI_Win_lock' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI3Win9Get_groupEv[_ZNK3MPI3Win9Get_groupEv]+0x12): undefined reference to `MPI_Win_get_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_[_ZNK3MPI3Win3GetEPKviRKNS_8DatatypeEiliS5_]+0x32): undefined reference to `MPI_Get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Fence(int) const': TauUnify.cpp:(.text._ZNK3MPI3Win5FenceEi[_ZNK3MPI3Win5FenceEi]+0x9): undefined reference to `MPI_Win_fence' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Complete() const': TauUnify.cpp:(.text._ZNK3MPI3Win8CompleteEv[_ZNK3MPI3Win8CompleteEv]+0x5): undefined reference to `MPI_Win_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Accumulate(void const*, int, MPI::Datatype const&, int, long, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE[_ZNK3MPI3Win10AccumulateEPKviRKNS_8DatatypeEiliS5_RKNS_2OpE]+0x42): undefined reference to `MPI_Accumulate' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Set_errhandler(MPI::Errhandler const&) const': TauUnify.cpp:(.text._ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE[_ZNK3MPI3Win14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Win_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Win::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI3Win14Get_errhandlerEv[_ZNK3MPI3Win14Get_errhandlerEv]+0x12): undefined reference to `MPI_Win_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Set(char const*, char const*)': TauUnify.cpp:(.text._ZN3MPI4Info3SetEPKcS2_[_ZN3MPI4Info3SetEPKcS2_]+0x5): undefined reference to `MPI_Info_set' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_valuelen(char const*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Info12Get_valuelenEPKcRi[_ZNK3MPI4Info12Get_valuelenEPKcRi]+0xe): undefined reference to `MPI_Info_get_valuelen' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nthkey(int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info10Get_nthkeyEiPc[_ZNK3MPI4Info10Get_nthkeyEiPc]+0x5): undefined reference to `MPI_Info_get_nthkey' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get_nkeys() const': TauUnify.cpp:(.text._ZNK3MPI4Info9Get_nkeysEv[_ZNK3MPI4Info9Get_nkeysEv]+0xe): undefined reference to `MPI_Info_get_nkeys' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Get(char const*, int, char*) const': TauUnify.cpp:(.text._ZNK3MPI4Info3GetEPKciPc[_ZNK3MPI4Info3GetEPKciPc]+0xe): undefined reference to `MPI_Info_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Free()': TauUnify.cpp:(.text._ZN3MPI4Info4FreeEv[_ZN3MPI4Info4FreeEv]+0x5): undefined reference to `MPI_Info_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Dup() const': TauUnify.cpp:(.text._ZNK3MPI4Info3DupEv[_ZNK3MPI4Info3DupEv]+0x12): undefined reference to `MPI_Info_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Info::Delete(char const*)': TauUnify.cpp:(.text._ZN3MPI4Info6DeleteEPKc[_ZN3MPI4Info6DeleteEPKc]+0x5): undefined reference to `MPI_Info_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_cancelled(bool)': TauUnify.cpp:(.text._ZN3MPI6Status13Set_cancelledEb[_ZN3MPI6Status13Set_cancelledEb]+0x9): undefined reference to `MPI_Status_set_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Set_elements(MPI::Datatype const&, int)': TauUnify.cpp:(.text._ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi[_ZN3MPI6Status12Set_elementsERKNS_8DatatypeEi]+0x9): undefined reference to `MPI_Status_set_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_elements(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE[_ZNK3MPI6Status12Get_elementsERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_elements' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Is_cancelled() const': TauUnify.cpp:(.text._ZNK3MPI6Status12Is_cancelledEv[_ZNK3MPI6Status12Is_cancelledEv]+0xe): undefined reference to `MPI_Test_cancelled' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Status::Get_count(MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI6Status9Get_countERKNS_8DatatypeE[_ZNK3MPI6Status9Get_countERKNS_8DatatypeE]+0x12): undefined reference to `MPI_Get_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Errhandler::Free()': TauUnify.cpp:(.text._ZN3MPI10Errhandler4FreeEv[_ZN3MPI10Errhandler4FreeEv]+0x5): undefined reference to `MPI_Errhandler_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Is_commutative() const': TauUnify.cpp:(.text._ZNK3MPI2Op14Is_commutativeEv[_ZNK3MPI2Op14Is_commutativeEv]+0xe): undefined reference to `MPI_Op_commutative' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Reduce_local(void const*, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE[_ZNK3MPI2Op12Reduce_localEPKvPviRKNS_8DatatypeE]+0x14): undefined reference to `MPI_Reduce_local' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Free()': TauUnify.cpp:(.text._ZN3MPI2Op4FreeEv[_ZN3MPI2Op4FreeEv]+0x5): undefined reference to `MPI_Op_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)': TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x18): undefined reference to `ompi_mpi_cxx_op_intercept' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x26): undefined reference to `MPI_Op_create' TauUnify.cpp:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[_ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb]+0x40): undefined reference to `ompi_op_set_cxx_callback' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Free()': TauUnify.cpp:(.text._ZN3MPI5Group4FreeEv[_ZN3MPI5Group4FreeEv]+0x5): undefined reference to `MPI_Group_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_excl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_exclEiPA3_Ki[_ZNK3MPI5Group10Range_exclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Range_incl(int, int const (*) [3]) const': TauUnify.cpp:(.text._ZNK3MPI5Group10Range_inclEiPA3_Ki[_ZNK3MPI5Group10Range_inclEiPA3_Ki]+0x19): undefined reference to `MPI_Group_range_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Excl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4ExclEiPKi[_ZNK3MPI5Group4ExclEiPKi]+0x19): undefined reference to `MPI_Group_excl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Incl(int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI5Group4InclEiPKi[_ZNK3MPI5Group4InclEiPKi]+0x19): undefined reference to `MPI_Group_incl' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_rankEv[_ZNK3MPI5Group8Get_rankEv]+0xe): undefined reference to `MPI_Group_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Group::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI5Group8Get_sizeEv[_ZNK3MPI5Group8Get_sizeEv]+0xe): undefined reference to `MPI_Group_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5SplitEii[_ZNK3MPI9Intercomm5SplitEii]+0x18): undefined reference to `MPI_Comm_split' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm6CreateERKNS_5GroupE[_ZNK3MPI9Intercomm6CreateERKNS_5GroupE]+0x19): undefined reference to `MPI_Comm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Is_inter() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Is_interEv[_ZNK3MPI4Comm8Is_interEv]+0xe): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_group() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm16Get_remote_groupEv[_ZNK3MPI9Intercomm16Get_remote_groupEv]+0x12): undefined reference to `MPI_Comm_remote_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Get_remote_size() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm15Get_remote_sizeEv[_ZNK3MPI9Intercomm15Get_remote_sizeEv]+0xe): undefined reference to `MPI_Comm_remote_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5CloneEv[_ZNK3MPI9Intercomm5CloneEv]+0xe): undefined reference to `MPI_Comm_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_topology() const': TauUnify.cpp:(.text._ZNK3MPI4Comm12Get_topologyEv[_ZNK3MPI4Comm12Get_topologyEv]+0xe): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Map(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm3MapEiPKiS2_[_ZNK3MPI9Graphcomm3MapEiPKiS2_]+0xe): undefined reference to `MPI_Graph_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm13Get_neighborsEiiPi[_ZNK3MPI9Graphcomm13Get_neighborsEiiPi]+0x5): undefined reference to `MPI_Graph_neighbors' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_neighbors_count(int) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm19Get_neighbors_countEi[_ZNK3MPI9Graphcomm19Get_neighbors_countEi]+0xe): undefined reference to `MPI_Graph_neighbors_count' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_topo(int, int, int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_topoEiiPiS1_[_ZNK3MPI9Graphcomm8Get_topoEiiPiS1_]+0x5): undefined reference to `MPI_Graph_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Get_dims(int*, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm8Get_dimsEPiS1_[_ZNK3MPI9Graphcomm8Get_dimsEPiS1_]+0x5): undefined reference to `MPI_Graphdims_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Map(int, int const*, bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3MapEiPKiPKb[_ZNK3MPI8Cartcomm3MapEiPKiPKb]+0x65): undefined reference to `MPI_Cart_map' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_dim() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm7Get_dimEv[_ZNK3MPI8Cartcomm7Get_dimEv]+0xe): undefined reference to `MPI_Cartdim_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Shift(int, int, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5ShiftEiiRiS1_[_ZNK3MPI8Cartcomm5ShiftEiiRiS1_]+0x5): undefined reference to `MPI_Cart_shift' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_coords(int, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm10Get_coordsEiiPi[_ZNK3MPI8Cartcomm10Get_coordsEiiPi]+0x5): undefined reference to `MPI_Cart_coords' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_cart_rank(int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm13Get_cart_rankEPKi[_ZNK3MPI8Cartcomm13Get_cart_rankEPKi]+0xe): undefined reference to `MPI_Cart_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Get_topo(int, int*, bool*, int*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0x63): undefined reference to `MPI_Cart_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_[_ZNK3MPI8Cartcomm8Get_topoEiPiPbS1_]+0xbf): undefined reference to `MPI_Cart_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEi]+0xb7): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int, int*) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEiPi]+0x38): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn(char const*, char const**, int, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi[_ZNK3MPI9Intracomm5SpawnEPKcPS2_iRKNS_4InfoEi]+0x37): undefined reference to `MPI_Comm_spawn' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Connect(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm7ConnectEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_connect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Accept(char const*, MPI::Info const&, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi[_ZNK3MPI9Intracomm6AcceptEPKcRKNS_4InfoEi]+0x1f): undefined reference to `MPI_Comm_accept' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_intercomm(int, MPI::Comm const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii[_ZNK3MPI9Intracomm16Create_intercommEiRKNS_4CommEii]+0x23): undefined reference to `MPI_Intercomm_create' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Exscan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm6ExscanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Exscan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Scan(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI9Intracomm4ScanEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Scan' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI4Comm11Delete_attrEi[_ZN3MPI4Comm11Delete_attrEi]+0x5): undefined reference to `MPI_Attr_delete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_attrEiPv[_ZNK3MPI4Comm8Get_attrEiPv]+0xe): undefined reference to `MPI_Attr_get' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_attr(int, void const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Set_attrEiPKv[_ZNK3MPI4Comm8Set_attrEiPKv]+0x5): undefined reference to `MPI_Attr_put' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_errhandler(MPI::Errhandler const&)': TauUnify.cpp:(.text._ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE[_ZN3MPI4Comm14Set_errhandlerERKNS_10ErrhandlerE]+0x9): undefined reference to `MPI_Comm_set_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_errhandler() const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Get_errhandlerEv[_ZNK3MPI4Comm14Get_errhandlerEv]+0x12): undefined reference to `MPI_Comm_get_errhandler' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Abort(int)': TauUnify.cpp:(.text._ZN3MPI4Comm5AbortEi[_ZN3MPI4Comm5AbortEi]+0x5): undefined reference to `MPI_Abort' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI4Comm8Set_nameEPKc[_ZN3MPI4Comm8Set_nameEPKc]+0x5): undefined reference to `MPI_Comm_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_nameEPcRi[_ZNK3MPI4Comm8Get_nameEPcRi]+0x5): undefined reference to `MPI_Comm_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Disconnect()': TauUnify.cpp:(.text._ZN3MPI4Comm10DisconnectEv[_ZN3MPI4Comm10DisconnectEv]+0x5): undefined reference to `MPI_Comm_disconnect' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce_scatter(void const*, void*, int*, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm14Reduce_scatterEPKvPvPiRKNS_8DatatypeERKNS_2OpE]+0x1c): undefined reference to `MPI_Reduce_scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allreduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE[_ZNK3MPI4Comm9AllreduceEPKvPviRKNS_8DatatypeERKNS_2OpE]+0x1b): undefined reference to `MPI_Allreduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Reduce(void const*, void*, int, MPI::Datatype const&, MPI::Op const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi[_ZNK3MPI4Comm6ReduceEPKvPviRKNS_8DatatypeERKNS_2OpEi]+0x28): undefined reference to `MPI_Reduce' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallw(void const*, int const*, int const*, MPI::Datatype const*, void*, int const*, int const*, MPI::Datatype const*) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallwEPKvPKiS4_PKNS_8DatatypeEPvS4_S4_S7_]+0xda): undefined reference to `MPI_Alltoallw' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoallv(void const*, int const*, int const*, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_[_ZNK3MPI4Comm9AlltoallvEPKvPKiS4_RKNS_8DatatypeEPvS4_S4_S7_]+0x3f): undefined reference to `MPI_Alltoallv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Alltoall(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm8AlltoallEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Alltoall' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_[_ZNK3MPI4Comm10AllgathervEPKviRKNS_8DatatypeEPvPKiS8_S5_]+0x32): undefined reference to `MPI_Allgatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Allgather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_[_ZNK3MPI4Comm9AllgatherEPKviRKNS_8DatatypeEPviS5_]+0x28): undefined reference to `MPI_Allgather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatterv(void const*, int const*, int const*, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i[_ZNK3MPI4Comm8ScattervEPKvPKiS4_RKNS_8DatatypeEPviS7_i]+0x3d): undefined reference to `MPI_Scatterv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Scatter(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm7ScatterEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Scatter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gatherv(void const*, int, MPI::Datatype const&, void*, int const*, int const*, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i[_ZNK3MPI4Comm7GathervEPKviRKNS_8DatatypeEPvPKiS8_S5_i]+0x3a): undefined reference to `MPI_Gatherv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Gather(void const*, int, MPI::Datatype const&, void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i[_ZNK3MPI4Comm6GatherEPKviRKNS_8DatatypeEPviS5_i]+0x32): undefined reference to `MPI_Gather' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bcast(void*, int, MPI::Datatype const&, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi[_ZNK3MPI4Comm5BcastEPviRKNS_8DatatypeEi]+0x17): undefined reference to `MPI_Bcast' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Barrier() const': TauUnify.cpp:(.text._ZNK3MPI4Comm7BarrierEv[_ZNK3MPI4Comm7BarrierEv]+0x5): undefined reference to `MPI_Barrier' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Free()': TauUnify.cpp:(.text._ZN3MPI4Comm4FreeEv[_ZN3MPI4Comm4FreeEv]+0x5): undefined reference to `MPI_Comm_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_rank() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_rankEv[_ZNK3MPI4Comm8Get_rankEv]+0xe): undefined reference to `MPI_Comm_rank' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI4Comm8Get_sizeEv[_ZNK3MPI4Comm8Get_sizeEv]+0xe): undefined reference to `MPI_Comm_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Get_group() const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Get_groupEv[_ZNK3MPI4Comm9Get_groupEv]+0x12): undefined reference to `MPI_Comm_group' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiii]+0x38): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv_replace(void*, int, MPI::Datatype const&, int, int, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE[_ZNK3MPI4Comm16Sendrecv_replaceEPviRKNS_8DatatypeEiiiiRNS_6StatusE]+0x34): undefined reference to `MPI_Sendrecv_replace' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_ii]+0x56): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Sendrecv(void const*, int, MPI::Datatype const&, int, int, void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE[_ZNK3MPI4Comm8SendrecvEPKviRKNS_8DatatypeEiiPviS5_iiRNS_6StatusE]+0x54): undefined reference to `MPI_Sendrecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv_init(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Recv_initEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Recv_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Rsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Rsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Ssend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ssend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm10Bsend_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Bsend_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send_init(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm9Send_initEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Send_init' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEii[_ZNK3MPI4Comm5ProbeEii]+0xd): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Probe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5ProbeEiiRNS_6StatusE[_ZNK3MPI4Comm5ProbeEiiRNS_6StatusE]+0xf): undefined reference to `MPI_Probe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEii[_ZNK3MPI4Comm6IprobeEii]+0x17): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Iprobe(int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IprobeEiiRNS_6StatusE[_ZNK3MPI4Comm6IprobeEiiRNS_6StatusE]+0x18): undefined reference to `MPI_Iprobe' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irecv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IrecvEPviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irecv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Irsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IrsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Irsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Issend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IssendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Issend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ibsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm6IbsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Ibsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Isend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5IsendEPKviRKNS_8DatatypeEii]+0x29): undefined reference to `MPI_Isend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Rsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5RsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Rsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Ssend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5SsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Ssend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Bsend(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm5BsendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Bsend' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEii]+0x26): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Recv(void*, int, MPI::Datatype const&, int, int, MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE[_ZNK3MPI4Comm4RecvEPviRKNS_8DatatypeEiiRNS_6StatusE]+0x20): undefined reference to `MPI_Recv' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Comm::Send(void const*, int, MPI::Datatype const&, int, int) const': TauUnify.cpp:(.text._ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii[_ZNK3MPI4Comm4SendEPKviRKNS_8DatatypeEii]+0x1a): undefined reference to `MPI_Send' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Grequest::Complete()': TauUnify.cpp:(.text._ZN3MPI8Grequest8CompleteEv[_ZN3MPI8Grequest8CompleteEv]+0x5): undefined reference to `MPI_Grequest_complete' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status() const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusEv[_ZNK3MPI7Request10Get_statusEv]+0x10): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Get_status(MPI::Status&) const': TauUnify.cpp:(.text._ZNK3MPI7Request10Get_statusERNS_6StatusE[_ZNK3MPI7Request10Get_statusERNS_6StatusE]+0x1f): undefined reference to `MPI_Request_get_status' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Prequest::Start()': TauUnify.cpp:(.text._ZN3MPI8Prequest5StartEv[_ZN3MPI8Prequest5StartEv]+0x5): undefined reference to `MPI_Start' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Cancel() const': TauUnify.cpp:(.text._ZNK3MPI7Request6CancelEv[_ZNK3MPI7Request6CancelEv]+0x5): undefined reference to `MPI_Cancel' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test()': TauUnify.cpp:(.text._ZN3MPI7Request4TestEv[_ZN3MPI7Request4TestEv]+0x10): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Test(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4TestERNS_6StatusE[_ZN3MPI7Request4TestERNS_6StatusE]+0x12): undefined reference to `MPI_Test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Free()': TauUnify.cpp:(.text._ZN3MPI7Request4FreeEv[_ZN3MPI7Request4FreeEv]+0x5): undefined reference to `MPI_Request_free' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait()': TauUnify.cpp:(.text._ZN3MPI7Request4WaitEv[_ZN3MPI7Request4WaitEv]+0x7): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Request::Wait(MPI::Status&)': TauUnify.cpp:(.text._ZN3MPI7Request4WaitERNS_6StatusE[_ZN3MPI7Request4WaitERNS_6StatusE]+0x9): undefined reference to `MPI_Wait' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_name(char const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_nameEPKc[_ZN3MPI8Datatype8Set_nameEPKc]+0x5): undefined reference to `MPI_Type_set_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Set_attr(int, void const*)': TauUnify.cpp:(.text._ZN3MPI8Datatype8Set_attrEiPKv[_ZN3MPI8Datatype8Set_attrEiPKv]+0x5): undefined reference to `MPI_Type_set_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_name(char*, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_nameEPcRi[_ZNK3MPI8Datatype8Get_nameEPcRi]+0x5): undefined reference to `MPI_Type_get_name' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_envelope(int&, int&, int&, int&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_[_ZNK3MPI8Datatype12Get_envelopeERiS1_S1_S1_]+0x5): undefined reference to `MPI_Type_get_envelope' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_contents(int, int, int, int*, long*, MPI::Datatype*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_[_ZNK3MPI8Datatype12Get_contentsEiiiPiPlPS0_]+0x68): undefined reference to `MPI_Type_get_contents' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_attr(int, void*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_attrEiPv[_ZNK3MPI8Datatype8Get_attrEiPv]+0xe): undefined reference to `MPI_Type_get_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Delete_attr(int)': TauUnify.cpp:(.text._ZN3MPI8Datatype11Delete_attrEi[_ZN3MPI8Datatype11Delete_attrEi]+0x5): undefined reference to `MPI_Type_delete_attr' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Dup() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype3DupEv[_ZNK3MPI8Datatype3DupEv]+0x12): undefined reference to `MPI_Type_dup' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_darray(int, int, int, int const*, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i[_ZNK3MPI8Datatype13Create_darrayEiiiPKiS2_S2_S2_i]+0x43): undefined reference to `MPI_Type_create_darray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_subarray(int, int const*, int const*, int const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i[_ZNK3MPI8Datatype15Create_subarrayEiPKiS2_S2_i]+0x29): undefined reference to `MPI_Type_create_subarray' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack_external(char const*, void const*, long, long&, void*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi[_ZNK3MPI8Datatype15Unpack_externalEPKcPKvlRlPvi]+0x21): undefined reference to `MPI_Unpack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external_size(char const*, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype18Pack_external_sizeEPKci[_ZNK3MPI8Datatype18Pack_external_sizeEPKci]+0x16): undefined reference to `MPI_Pack_external_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_external(char const*, void const*, int, void*, long, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl[_ZNK3MPI8Datatype13Pack_externalEPKcPKviPvlRl]+0x10): undefined reference to `MPI_Pack_external' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack_size(int, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE[_ZNK3MPI8Datatype9Pack_sizeEiRKNS_4CommE]+0x16): undefined reference to `MPI_Pack_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Unpack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype6UnpackEPKviPviRiRKNS_4CommE]+0x1e): undefined reference to `MPI_Unpack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Pack(void const*, int, void*, int, int&, MPI::Comm const&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE[_ZNK3MPI8Datatype4PackEPKviPviRiRKNS_4CommE]+0x1b): undefined reference to `MPI_Pack' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Commit()': TauUnify.cpp:(.text._ZN3MPI8Datatype6CommitEv[_ZN3MPI8Datatype6CommitEv]+0x5): undefined reference to `MPI_Type_commit' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_true_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Get_true_extentERlS1_[_ZNK3MPI8Datatype15Get_true_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_true_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_extent(long&, long&) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype10Get_extentERlS1_[_ZNK3MPI8Datatype10Get_extentERlS1_]+0x5): undefined reference to `MPI_Type_get_extent' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Get_size() const': TauUnify.cpp:(.text._ZNK3MPI8Datatype8Get_sizeEv[_ZNK3MPI8Datatype8Get_sizeEv]+0xe): undefined reference to `MPI_Type_size' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_resized(long, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_resizedEll[_ZNK3MPI8Datatype14Create_resizedEll]+0x1b): undefined reference to `MPI_Type_create_resized' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed_block(int, int, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype20Create_indexed_blockEiiPKi[_ZNK3MPI8Datatype20Create_indexed_blockEiiPKi]+0x1b): undefined reference to `MPI_Type_create_indexed_block' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hvector(int, int, long) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_hvectorEiil[_ZNK3MPI8Datatype14Create_hvectorEiil]+0x1b): undefined reference to `MPI_Type_create_hvector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_hindexed(int, int const*, long const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype15Create_hindexedEiPKiPKl[_ZNK3MPI8Datatype15Create_hindexedEiPKiPKl]+0x1d): undefined reference to `MPI_Type_create_hindexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_indexed(int, int const*, int const*) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype14Create_indexedEiPKiS2_[_ZNK3MPI8Datatype14Create_indexedEiPKiS2_]+0x1d): undefined reference to `MPI_Type_indexed' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_vector(int, int, int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype13Create_vectorEiii[_ZNK3MPI8Datatype13Create_vectorEiii]+0x1b): undefined reference to `MPI_Type_vector' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Datatype::Create_contiguous(int) const': TauUnify.cpp:(.text._ZNK3MPI8Datatype17Create_contiguousEi[_ZNK3MPI8Datatype17Create_contiguousEi]+0x14): undefined reference to `MPI_Type_contiguous' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Spawn_multiple(int, char const**, char const***, int const*, MPI::Info const*, int, int*)': TauUnify.cpp:(.text._ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi[_ZN3MPI9Intracomm14Spawn_multipleEiPPKcPS3_PKiPKNS_4InfoEiPi]+0xbb): undefined reference to `MPI_Comm_spawn_multiple' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create(MPI::Group const&) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x27): undefined reference to `MPI_Comm_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x34): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x53): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm6CreateERKNS_5GroupE[_ZNK3MPI9Intracomm6CreateERKNS_5GroupE]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x1d): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x37): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x56): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x65): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5CloneEv[_ZNK3MPI9Intracomm5CloneEv]+0x75): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intercomm::Merge(bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x25): undefined reference to `MPI_Intercomm_merge' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x32): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x51): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x62): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intercomm5MergeEb[_ZNK3MPI9Intercomm5MergeEb]+0x72): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Split(int, int) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x26): undefined reference to `MPI_Comm_split' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x33): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x52): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x63): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm5SplitEii[_ZNK3MPI9Intracomm5SplitEii]+0x73): undefined reference to `MPI_Comm_test_inter' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x21): undefined reference to `MPI_Graph_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x29): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x48): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x5e): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm12Create_graphEiPKiS2_b[_ZNK3MPI9Intracomm12Create_graphEiPKiS2_b]+0x6b): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm5CloneEv[_ZNK3MPI8Cartcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Cartcomm::Sub(bool const*) const': TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x1d): undefined reference to `MPI_Cartdim_get' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x66): undefined reference to `MPI_Cart_sub' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x7b): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0x9c): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xb2): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI8Cartcomm3SubEPKb[_ZNK3MPI8Cartcomm3SubEPKb]+0xc1): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Intracomm::Create_cart(int, int const*, bool const*, bool) const': TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x79): undefined reference to `MPI_Cart_create' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0x8e): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xaf): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xc3): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Intracomm11Create_cartEiPKiPKbb[_ZNK3MPI9Intracomm11Create_cartEiPKiPKbb]+0xd2): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o): In function `MPI::Graphcomm::Clone() const': TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x10): undefined reference to `MPI_Comm_dup' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x25): undefined reference to `MPI::Comm::Comm()' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x44): undefined reference to `MPI_Initialized' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x58): undefined reference to `ompi_mpi_comm_null' TauUnify.cpp:(.text._ZNK3MPI9Graphcomm5CloneEv[_ZNK3MPI9Graphcomm5CloneEv]+0x65): undefined reference to `MPI_Topo_test' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI8DatatypeE[_ZTVN3MPI8DatatypeE]+0x78): undefined reference to `MPI::Datatype::Free()' /home/hills/seska/packages/tau/x86_64/lib/libtau-mpi-pdt.a(TauUnify.o):(.data.rel.ro._ZTVN3MPI3WinE[_ZTVN3MPI3WinE]+0x48): undefined reference to `MPI::Win::Free()' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language FC Popping language FC in /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -MMD -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: program main end Valid FC linker flag -MMD Testing FC compiler flag -MMD sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g -MMD /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g -MMD /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh --help sh: Usage: tau_compiler.sh -optVerbose Turn on verbose debugging message -optMemDbg Enable TAU's runtime memory debugger -optDetectMemoryLeaks Synonym for -optMemDbg -optPdtDir="" PDT architecture directory. Typically $(PDTDIR)/$(PDTARCHDIR) -optPdtF95Opts="" Options for Fortran parser in PDT (f95parse) -optPdtF95Reset="" Reset options to the Fortran parser to the given list -optPdtCOpts="" Options for C parser in PDT (cparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCReset="" Reset options to the C parser to the given list -optPdtCxxOpts="" Options for C++ parser in PDT (cxxparse). Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) $(TAU_DEFS) -optPdtCxxReset="" Reset options to the C++ parser to the given list -optPdtF90Parser="" Specify a different Fortran parser. For e.g., f90parse instead of f95parse -optPdtGnuFortranParser Specify the GNU gfortran PDT parser gfparse instead of f95parse -optPdtCleanscapeParser Specify the Cleanscape Fortran parser -optPdtUser="" Optional arguments for parsing source code -optTauInstr="" Specify location of tau_instrumentor. Typically $(TAUROOT)/$(CONFIG_ARCH)/bin/tau_instrumentor -optPreProcess Preprocess the source code before parsing. Uses /usr/bin/cpp -P by default. -optContinueBeforeOMP Insert a CONTINUE statement before !$OMP directives. -optCPP="" Specify an alternative preprocessor and pre-process the sources. -optCPPOpts="" Specify additional options to the C pre-processor. -optCPPReset="" Reset C preprocessor options to the specified list. -optTauSelectFile="" Specify selective instrumentation file for tau_instrumentor. -optTauWrapFile="" Specify path to the link_options.tau file generated by tau_wrap -optTrackIO Specify wrapping of POSIX I/O calls at link time. -optTrackUPCR Specify wrapping of UPC runtime calls at link time. -optTrackDMAPP Specify wrapping of Cray DMAPP library calls at link time. -optTrackPthread Specify wrapping of Pthread library calls at link time. -optTrackGOMP Specify wrapping of GOMP library calls at link time. (default) -optNoTrackGOMP Disable wrapping of GOMP library calls at link time. -optTrackMPCThread Specify wrapping of MPC Thread library calls at link time. -optWrappersDir="" Specify the location of the link wrappers directory. -optPDBFile="" Specify PDB file for tau_instrumentor. Skips parsing stage. -optTau="" Specify options for tau_instrumentor -optCompile="" Options passed to the compiler by the user. -optTauDefs="" Options passed to the compiler by TAU. Typically $(TAU_DEFS) -optTauIncludes="" Options passed to the compiler by TAU. Typically $(TAU_MPI_INCLUDE) $(TAU_INCLUDE) -optIncludeMemory="" Flags for replacement of malloc/free. Typically -I$(TAU_DIR)/include/TauMemory -optReset="" Reset options to the compiler to the given list -optLinking="" Options passed to the linker. Typically $(TAU_MPI_FLIBS) $(TAU_LIBS) $(TAU_CXXLIBS) -optLinkReset="" Reset options to the linker to the given list -optLinkPreserveLib="" Libraries which TAU should preserve the order of on the link line see "Moving these libraries to the end of the link line:". Default: none. -optTauCC="" Specifies the C compiler used by TAU -optTauUseCXXForC Specifies the use of a C++ compiler for compiling C code -optUseReturnFix Specifies the use of a bug fix with ROSE parser using EDG v3.x -optOpariTool="" Specifies the location of the Opari tool -optLinkOnly Disable instrumentation during compilation, do link in the TAU libs -optOpariDir="" Specifies the location of the Opari directory -optOpariOpts="" Specifies optional arguments to the Opari tool -optOpariNoInit="" Do not initlize the POMP2 regions. -optOpariLibs="" Specifies the libraries that have POMP2 regions. (Overrides optOpariNoInit -optOpariReset="" Resets options passed to the Opari tool -optOpari2Tool="" Specifies the location of the Opari tool -optOpari2ConfigTool="" Specifies the location of the Opari tool -optOpari2Opts="" Specifies optional arguments to the Opari tool -optOpari2Reset="" Resets options passed to the Opari tool -optOpari2Dir="" Specifies the location of the Opari directory -optNoMpi Removes -l*mpi* libraries during linking -optMpi Does not remove -l*mpi* libraries during linking (default) -optNoRevert Exit on error. Does not revert to the original compilation rule on error. -optRevert Revert to the original compilation rule on error (default). -optNoCompInst Do not revert to compiler instrumentation if source instrumentation fails. -optKeepFiles Does not remove intermediate .pdb and .inst.* files -optAppCC="" Specifies the fallback C compiler. -optAppCXX="" Specifies the fallback C++ compiler. -optAppF90="" Specifies the fallback F90 compiler. -optShared Use shared library version of TAU. -optCompInst Use compiler-based instrumentation. -optPDTInst Use PDT-based instrumentation. -optHeaderInst Enable instrumentation of headers -optDisableHeaderInst Disable instrumentation of headers -optFixHashIf -optMICOffload Links code for Intel MIC offloading, requires both host and MIC TAU libraries ================================================================================ TEST checkRestrict from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -c -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/g++ Error: Full Command attempted is -- /usr/bin/g++ -c -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {/tmp/petsc-h9mPvE/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-h9mPvE/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ /tmp/petsc-h9mPvE/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-h9mPvE/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor /tmp/petsc-h9mPvE/config.setCompilers/conftest.c.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.c.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: Using built-in specs. COLLECT_GCC=/usr/bin/g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.7.3-1ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --with-system-zlib --enable-objc-gc --with-cloog --enable-cloog-backend=ppl --disable-cloog-version-check --disable-ppl-version-check --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.7.3 (Ubuntu/Linaro 4.7.3-1ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-h9mPvE/config.compilers/conftest' '-v' '-g' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7/' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-h9mPvE/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ltau-mpi-pdt -lbfd -liberty --export-dynamic -lrt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lstdc++ -lgcc_s -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt error message = {Using built-in specs. COLLECT_GCC=/usr/bin/g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.7.3-1ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --with-system-zlib --enable-objc-gc --with-cloog --enable-cloog-backend=ppl --disable-cloog-version-check --disable-ppl-version-check --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.7.3 (Ubuntu/Linaro 4.7.3-1ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-h9mPvE/config.compilers/conftest' '-v' '-g' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7/' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-h9mPvE/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ltau-mpi-pdt -lbfd -liberty --export-dynamic -lrt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lstdc++ -lgcc_s -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o } Pushing language CXX Popping language CXX in /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx compilers: Checking arg Debug: compilers: Unknown arg Debug: compilers: Checking arg Moving compilers: Unknown arg Moving compilers: Checking arg these compilers: Unknown arg these compilers: Checking arg libraries compilers: Unknown arg libraries compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg end compilers: Unknown arg end compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg line: compilers: Unknown arg line: compilers: Checking arg -lTauMpi-mpi-pdt compilers: Found library: -lTauMpi-mpi-pdt Library already in C list so skipping in C++ compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in C++ compilers: Checking arg -lmpi_cxx compilers: Found library: -lmpi_cxx Library already in C list so skipping in C++ compilers: Checking arg -lmpi_f90 compilers: Found library: -lmpi_f90 Library already in C list so skipping in C++ compilers: Checking arg -lmpi_f77 compilers: Found library: -lmpi_f77 Library already in C list so skipping in C++ compilers: Checking arg -ltau-mpi-pdt compilers: Found library: -ltau-mpi-pdt Library already in C list so skipping in C++ compilers: Checking arg Debug: compilers: Unknown arg Debug: compilers: Checking arg Linking compilers: Unknown arg Linking compilers: Checking arg with compilers: Unknown arg with compilers: Checking arg TAU compilers: Unknown arg TAU compilers: Checking arg Options compilers: Unknown arg Options compilers: Checking arg Executing> compilers: Unknown arg Executing> compilers: Checking arg /usr/bin/g++ compilers: Unknown arg /usr/bin/g++ compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Found library directory: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Found library: -lbfd Library already in C list so skipping in C++ compilers: Checking arg -liberty compilers: Found library: -liberty Library already in C list so skipping in C++ compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -ltau-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Checking arg -liberty compilers: Checking arg -Wl,--export-dynamic compilers: Unknown arg -Wl,--export-dynamic compilers: Checking arg -lrt compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Checking arg -lm compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -ltau-mpi-pdt compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/bin/g++ compilers: Unknown arg COLLECT_GCC=/usr/bin/g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs compilers: Checking arg --enable-languages=c,c++,go,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,go,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.7 compilers: Unknown arg --program-suffix=-4.7 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.7 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.7 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --with-cloog compilers: Unknown arg --with-cloog compilers: Checking arg --enable-cloog-backend=ppl compilers: Unknown arg --enable-cloog-backend=ppl compilers: Checking arg --disable-cloog-version-check compilers: Unknown arg --disable-cloog-version-check compilers: Checking arg --disable-ppl-version-check compilers: Unknown arg --disable-ppl-version-check compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.7.3 compilers: Unknown arg 4.7.3 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.7.3-1ubuntu1) compilers: Unknown arg 4.7.3-1ubuntu1) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Checking arg -liberty compilers: Checking arg -lrt compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Checking arg -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ltau-mpi-pdt compilers: Checking arg -lbfd compilers: Checking arg -liberty compilers: Checking arg --export-dynamic compilers: Unknown arg --export-dynamic compilers: Checking arg -lrt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Checking arg -ltau-mpi-pdt compilers: Checking arg -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu'] compilers: Check that Cxx libraries can be used from C Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:528) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:528) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:587) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:587) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:624) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:624) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.compilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.compilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.compilers/conftest.o: In function `MAIN__': /home/hills/seska/packages/petsc/conftest.inst.F:11: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.compilers/conftest.o: In function `MAIN__': /home/hills/seska/packages/petsc/conftest.inst.F:11: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.compilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.compilers/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.compilers/conftest.o: In function `MAIN__': /home/hills/seska/packages/petsc/conftest.inst.F:11: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.compilers/conftest.o: In function `MAIN__': /home/hills/seska/packages/petsc/conftest.inst.F:11: undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language FC Popping language FC in /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: program main call d1_chk() end Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:634) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:634) Determine if Fortran handles preprocessing properly Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:655) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:655) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g -DTesting /tmp/petsc-h9mPvE/config.setCompilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g -DTesting /tmp/petsc-h9mPvE/config.setCompilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DTesting -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DTesting -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:671) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:671) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -V Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -V sh: sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: Driving: gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -l gfortran -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.7.3-1ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --with-system-zlib --enable-objc-gc --with-cloog --enable-cloog-backend=ppl --disable-cloog-version-check --disable-ppl-version-check --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.7.3 (Ubuntu/Linaro 4.7.3-1ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-h9mPvE/config.compilers/conftest' '-v' '-fPIC' '-g' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7/' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-h9mPvE/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ltau-mpi-pdt -lbfd -liberty --export-dynamic -lrt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lgfortran -lm -lstdc++ -lgcc_s -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt error message = {Driving: gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -l gfortran -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -l gfortran -l m -shared-libgcc -specs=/usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec Using built-in specs. Reading specs from /usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec rename spec lib to liborig COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.7.3-1ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs --enable-languages=c,c++,go,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.7 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.7 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --with-system-zlib --enable-objc-gc --with-cloog --enable-cloog-backend=ppl --disable-cloog-version-check --disable-ppl-version-check --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.7.3 (Ubuntu/Linaro 4.7.3-1ubuntu1) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-h9mPvE/config.compilers/conftest' '-v' '-fPIC' '-g' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib' '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64' '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib' '-L/usr/lib/gcc/x86_64-linux-gnu/4.7/' '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o /tmp/petsc-h9mPvE/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -rpath /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -rpath /usr/lib/gcc/x86_64-linux-gnu/4.7 -rpath /usr/lib/x86_64-linux-gnu -rpath /lib/x86_64-linux-gnu -rpath /usr/lib/x86_64-linux-gnu -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ltau-mpi-pdt -lbfd -liberty --export-dynamic -lrt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -rpath /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lgfortran -lm -lstdc++ -lgcc_s -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o } Pushing language FC Popping language FC in /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -v -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: program main end Popping language FC compilers: Checking arg Debug: compilers: Unknown arg Debug: compilers: Checking arg Moving compilers: Unknown arg Moving compilers: Checking arg these compilers: Unknown arg these compilers: Checking arg libraries compilers: Unknown arg libraries compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg end compilers: Unknown arg end compilers: Checking arg of compilers: Unknown arg of compilers: Checking arg the compilers: Unknown arg the compilers: Checking arg link compilers: Unknown arg link compilers: Checking arg line: compilers: Unknown arg line: compilers: Checking arg -lTauMpi-mpi-pdt compilers: Found library: -lTauMpi-mpi-pdt Library already in C list so skipping in Fortran compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in Fortran compilers: Checking arg -lmpi_cxx compilers: Found library: -lmpi_cxx Library already in C list so skipping in Fortran compilers: Checking arg -lmpi_f90 compilers: Found library: -lmpi_f90 Library already in C list so skipping in Fortran compilers: Checking arg -lmpi_f77 compilers: Found library: -lmpi_f77 Library already in C list so skipping in Fortran compilers: Checking arg -ltau-mpi-pdt compilers: Found library: -ltau-mpi-pdt Library already in C list so skipping in Fortran compilers: Checking arg Debug: compilers: Unknown arg Debug: compilers: Checking arg Linking compilers: Unknown arg Linking compilers: Checking arg with compilers: Unknown arg with compilers: Checking arg TAU compilers: Unknown arg TAU compilers: Checking arg Options compilers: Unknown arg Options compilers: Checking arg Executing> compilers: Unknown arg Executing> compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Found library directory: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Found library: -lbfd Library already in C list so skipping in Fortran compilers: Checking arg -liberty compilers: Found library: -liberty Library already in C list so skipping in Fortran compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Found library directory: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -lTauMpi-mpi-pdt compilers: Already in lflags: -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -ltau-mpi-pdt compilers: Already in lflags: -ltau-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Already in lflags: -lbfd compilers: Checking arg -liberty compilers: Already in lflags: -liberty compilers: Checking arg -Wl,--export-dynamic compilers: Unknown arg -Wl,--export-dynamic compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -lTauMpi-mpi-pdt compilers: Already in lflags: -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -ltau-mpi-pdt compilers: Already in lflags: -ltau-mpi-pdt compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Already in lflags: -lbfd compilers: Checking arg -liberty compilers: Already in lflags: -liberty compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Unknown arg -Wl,-rpath,/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -lTauMpi-mpi-pdt compilers: Already in lflags: -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -ltau-mpi-pdt compilers: Already in lflags: -ltau-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Already in lflags: -lbfd compilers: Checking arg -liberty compilers: Already in lflags: -liberty compilers: Checking arg -Wl,--export-dynamic compilers: Unknown arg -Wl,--export-dynamic compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Unknown arg -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -lTauMpi-mpi-pdt compilers: Already in lflags: -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -ltau-mpi-pdt compilers: Already in lflags: -ltau-mpi-pdt compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec compilers: Unknown arg -specs=/usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.7/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-4.7/README.Bugs compilers: Checking arg --enable-languages=c,c++,go,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,c++,go,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-4.7 compilers: Unknown arg --program-suffix=-4.7 compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.7 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.7 compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --with-cloog compilers: Unknown arg --with-cloog compilers: Checking arg --enable-cloog-backend=ppl compilers: Unknown arg --enable-cloog-backend=ppl compilers: Checking arg --disable-cloog-version-check compilers: Unknown arg --disable-cloog-version-check compilers: Checking arg --disable-ppl-version-check compilers: Unknown arg --disable-ppl-version-check compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.7.3 compilers: Unknown arg 4.7.3 compilers: Checking arg (Ubuntu/Linaro compilers: Unknown arg (Ubuntu/Linaro compilers: Checking arg 4.7.3-1ubuntu1) compilers: Unknown arg 4.7.3-1ubuntu1) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.7/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/collect2 compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -z compilers: Unknown arg -z compilers: Checking arg relro compilers: Unknown arg relro compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtbegin.o compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Already in lflags so skipping: -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Already in lflags so skipping: -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/4.7/../../.. compilers: Checking arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-h9mPvE/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/lib compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 compilers: Checking arg -lbfd compilers: Already in lflags: -lbfd compilers: Checking arg -liberty compilers: Already in lflags: -liberty compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-linux-gnu/4.7 compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -rpath compilers: Found -rpath library: /home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Found -rpath library: /lib/x86_64-linux-gnu compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lTauMpi-mpi-pdt compilers: Already in lflags: -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ltau-mpi-pdt compilers: Already in lflags: -ltau-mpi-pdt compilers: Checking arg -lbfd compilers: Already in lflags: -lbfd compilers: Checking arg -liberty compilers: Already in lflags: -liberty compilers: Checking arg --export-dynamic compilers: Unknown arg --export-dynamic compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lTauMpi-mpi-pdt compilers: Already in lflags: -lTauMpi-mpi-pdt compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpi_cxx compilers: Already in lflags: -lmpi_cxx compilers: Checking arg -lmpi_f90 compilers: Already in lflags: -lmpi_f90 compilers: Checking arg -lmpi_f77 compilers: Already in lflags: -lmpi_f77 compilers: Checking arg -ltau-mpi-pdt compilers: Already in lflags: -ltau-mpi-pdt compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../x86_64-linux-gnu/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lm', '-lgfortran', '-lm', '-lgfortran', '-lm', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lm', '-lquadmath', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.setCompilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -o /tmp/petsc-h9mPvE/config.setCompilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.setCompilers/conftest -g /tmp/petsc-h9mPvE/config.setCompilers/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: /tmp/petsc-h9mPvE/config.setCompilers/conftest Executing: /tmp/petsc-h9mPvE/config.setCompilers/conftest sh: Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1016) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1016) Check that Fortran can be linked against C++ Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.compilers/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.compilers/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/cxxobj.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/cxxobj.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/cxxobj.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib /tmp/petsc-h9mPvE/config.compilers/confc.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1051) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1051) Determine whether the Fortran compiler handles F90 Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1064) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1064) Determine whether the Fortran compiler handles F2003 Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o error message = {conftest.inst.F:10.72: integer profiler(2) / 0, 0 / 1 Error: Unexpected data declaration statement at (1) conftest.inst.F:11.72: save profiler 1 Error: Unexpected attribute declaration statement at (1) conftest.inst.F:1.72: program main 1 Internal Error at (1): find_array_spec(): Missing spec } Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1084) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1084) Check for F90 array interfaces sh: uname -s Executing: uname -s sh: Linux Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.compilers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); abort(); } return; } Popping language C Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/fooobj.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/fooobj.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/fooobj.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.compilers/conftest sh: /tmp/petsc-h9mPvE/config.compilers/conftest Executing: /tmp/petsc-h9mPvE/config.compilers/conftest sh: arrays [0x7fffbc38b1b0 0x7fffbc38b1b0 0x7fffbc38b1b0] arrays [0x7fffbc38b160 0x7fffbc38b110 0x7fffbc38b160] pointers do not match! [(nil) 0x7fffbc38b1b0] [0x7f6a20ea01e4] ERROR while running executable: Could not execute "/tmp/petsc-h9mPvE/config.compilers/conftest": arrays [0x7fffbc38b1b0 0x7fffbc38b1b0 0x7fffbc38b1b0] arrays [0x7fffbc38b160 0x7fffbc38b110 0x7fffbc38b160] pointers do not match! [(nil) 0x7fffbc38b1b0] [0x7f6a20ea01e4] Program received signal SIGABRT: Process abort signal. Backtrace for this error: #0 0x7F6A21A52117 #1 0x7F6A21A526F4 #2 0x7F6A20E890AF #3 0x7F6A20E89037 #4 0x7F6A20E8C697 #5 0x430A07 in f90ptrtest_ at conftest.c:20 #6 0x4307F0 in MAIN__ at conftest.inst.F:29 Aborted (core dumped) Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1171) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1171) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.compilers/confdir -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.compilers/confdir -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -I/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/configtest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.compilers/conftest -I/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/configtest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.compilers/conftest -I/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.o /tmp/petsc-h9mPvE/config.compilers/configtest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1237) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1237) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module /tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {gfortran: error: unrecognized command line option ‘-module’ gfortran: error: unrecognized command line option ‘-module’ make: *** [all] Error 1 } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -module:/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-h9mPvE/config.compilers/confdir’ gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-h9mPvE/config.compilers/confdir’ make: *** [all] Error 1 } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fmod=/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-h9mPvE/config.compilers/confdir’ gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-h9mPvE/config.compilers/confdir’ make: *** [all] Error 1 } Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -J/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.compilers/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -J/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g /tmp/petsc-h9mPvE/config.compilers/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.compilers/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.compilers/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -J/tmp/petsc-h9mPvE/config.compilers/confdir -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.compilers -o /tmp/petsc-h9mPvE/config.compilers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/compilers.py:1364) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1364) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FFLAGS} ${FC_FLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.headers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.headers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers -o /tmp/petsc-h9mPvE/config.headers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 123 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 207 "/usr/include/string.h" 3 4 # 232 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 259 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 278 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 311 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 338 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 393 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 423 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 441 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 485 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 513 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 532 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 555 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 642 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 492 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 512 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 529 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 577 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 605 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 711 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 770 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 807 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 895 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 947 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 952 "/usr/include/stdlib.h" 2 3 4 # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.headers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.headers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers -o /tmp/petsc-h9mPvE/config.headers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.headers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.headers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.headers/conftest -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.headers/conftest sh: /tmp/petsc-h9mPvE/config.headers/conftest Executing: /tmp/petsc-h9mPvE/config.headers/conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 5 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/stat.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 104 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 __syscall_slong_t __unused[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 107 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 210 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int stat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 239 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int fstatat (int __fd, const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 264 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int lstat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 285 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int chmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); # 322 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int mkdir (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, const char *__path, const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 400 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 443 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __xmknod (int __ver, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); # 535 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 6 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.headers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.headers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers -o /tmp/petsc-h9mPvE/config.headers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 25 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 27 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 29 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 56 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 72 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 190 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.headers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.headers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers -o /tmp/petsc-h9mPvE/config.headers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 27 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_val.h" 1 3 4 # 34 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_valf.h" 1 3 4 # 36 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_vall.h" 1 3 4 # 37 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/inf.h" 1 3 4 # 40 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/nan.h" 1 3 4 # 43 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 3 4 typedef float float_t; typedef double double_t; # 47 "/usr/include/math.h" 2 3 4 # 70 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 127 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 71 "/usr/include/math.h" 2 3 4 # 89 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 127 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 90 "/usr/include/math.h" 2 3 4 # 136 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 127 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/math.h" 2 3 4 # 152 "/usr/include/math.h" 3 4 extern int signgam; # 193 "/usr/include/math.h" 3 4 enum { FP_NAN = 0, FP_INFINITE = 1, FP_ZERO = 2, FP_SUBNORMAL = 3, FP_NORMAL = 4 }; # 291 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 316 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 478 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_MATH_H" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.headers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.headers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers -o /tmp/petsc-h9mPvE/config.headers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 144 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 145 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 160 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 270 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 297 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 343 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 344 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 377 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 114 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 138 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 175 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 203 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 220 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 244 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 262 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 284 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 23 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 150 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef int wchar_t; # 25 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 29 "/usr/include/stdio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 34 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 36 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 33 "/usr/include/libio.h" 2 3 4 # 50 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 51 "/usr/include/libio.h" 2 3 4 # 145 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 155 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 178 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 246 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 294 "/usr/include/libio.h" 3 4 __off64_t _offset; # 303 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 339 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 391 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 435 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 465 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 90 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 102 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 164 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 1 3 4 # 165 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (const char *__old, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 209 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 227 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 252 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 266 "/usr/include/stdio.h" 3 4 extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 4 # 306 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 319 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 412 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 443 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 463 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 494 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 522 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 550 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 561 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 594 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 638 "/usr/include/stdio.h" 3 4 extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 665 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 737 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 773 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 792 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 4 # 824 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (const char *__s); # 1 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 873 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 913 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 943 "/usr/include/stdio.h" 3 4 # 26 "/usr/include/malloc.h" 2 3 4 # 57 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 143 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*volatile __malloc_initialize_hook) (void) __attribute__ ((__deprecated__)); extern void (*volatile __free_hook) (void *__ptr, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __malloc_hook) (size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __realloc_hook) (void *__ptr, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __memalign_hook) (size_t __alignment, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void (*volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 21 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/endian.h" 2 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 27 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 30 "/usr/include/strings.h" 2 3 4 extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 73 "/usr/include/strings.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 101 "/usr/include/strings.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 125 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (const char *__s1, const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (const char *__s1, const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 23 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 27 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 30 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 34 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 73 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 96 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 119 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 202 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 43 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 125 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/wait.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 103 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 151 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 297 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef union pthread_attr_t pthread_attr_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 169 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 197 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 217 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 253 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 254 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 311 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 335 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 341 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 351 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 358 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 361 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 395 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 396 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 397 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 31 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 37 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 61 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 78 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 79 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 100 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 114 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 137 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); typedef __id_t id_t; # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 # 148 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 160 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 64 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 65 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 4 # 67 "/usr/include/stdlib.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 95 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 139 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 305 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 219 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 315 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 492 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 512 "/usr/include/stdlib.h" 3 4 extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 529 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 577 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 605 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 619 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 641 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 662 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 711 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 733 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 770 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 807 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 895 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 947 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 952 "/usr/include/stdlib.h" 2 3 4 # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 23 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 29 "/usr/include/sched.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 30 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 34 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 73 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 96 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 119 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 202 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 43 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 125 "/usr/include/sched.h" 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 430 "/usr/include/time.h" 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 113 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 154 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 189 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 227 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 270 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 420 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 485 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 497 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 531 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 671 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 683 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 724 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 797 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 879 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 991 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1035 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1102 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1136 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1150 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 25 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 31 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); # 77 "/usr/include/setjmp.h" 3 4 extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 109 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 119 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/utsname.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 48 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 81 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 26 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/limits.h" 2 3 4 # 144 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 161 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 145 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 149 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 25 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 1 3 4 # 35 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 61 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 1 3 4 # 330 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 3 4 # 404 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 3 4 # 61 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 36 "/usr/include/fcntl.h" 2 3 4 typedef __mode_t mode_t; typedef __off_t off_t; # 60 "/usr/include/fcntl.h" 3 4 typedef __pid_t pid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 68 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 __syscall_slong_t __unused[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 69 "/usr/include/fcntl.h" 2 3 4 # 137 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 146 "/usr/include/fcntl.h" 3 4 extern int open (const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 170 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 192 "/usr/include/fcntl.h" 3 4 extern int creat (const char *__file, mode_t __mode) __attribute__ ((__nonnull__ (1))); # 221 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, off_t __len); # 238 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, off_t __offset, off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 260 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, off_t __offset, off_t __len); # 282 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fenv.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/fenv.h" 1 3 4 # 25 "/usr/include/fenv.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/fenv.h" 2 3 4 # 57 "/usr/include/fenv.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fenv.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/fenv.h" 3 4 enum { FE_INVALID = 0x01, __FE_DENORM = 0x02, FE_DIVBYZERO = 0x04, FE_OVERFLOW = 0x08, FE_UNDERFLOW = 0x10, FE_INEXACT = 0x20 }; enum { FE_TONEAREST = 0, FE_DOWNWARD = 0x400, FE_UPWARD = 0x800, FE_TOWARDZERO = 0xc00 }; typedef unsigned short int fexcept_t; typedef struct { unsigned short int __control_word; unsigned short int __unused1; unsigned short int __status_word; unsigned short int __unused2; unsigned short int __tags; unsigned short int __unused3; unsigned int __eip; unsigned short int __cs_selector; unsigned int __opcode:11; unsigned int __unused4:5; unsigned int __data_offset; unsigned short int __data_selector; unsigned short int __unused5; unsigned int __mxcsr; } fenv_t; # 58 "/usr/include/fenv.h" 2 3 4 extern int feclearexcept (int __excepts) __attribute__ ((__nothrow__ , __leaf__)); extern int fegetexceptflag (fexcept_t *__flagp, int __excepts) __attribute__ ((__nothrow__ , __leaf__)); extern int feraiseexcept (int __excepts) __attribute__ ((__nothrow__ , __leaf__)); extern int fesetexceptflag (const fexcept_t *__flagp, int __excepts) __attribute__ ((__nothrow__ , __leaf__)); extern int fetestexcept (int __excepts) __attribute__ ((__nothrow__ , __leaf__)); extern int fegetround (void) __attribute__ ((__nothrow__ , __leaf__)); extern int fesetround (int __rounding_direction) __attribute__ ((__nothrow__ , __leaf__)); extern int fegetenv (fenv_t *__envp) __attribute__ ((__nothrow__ , __leaf__)); extern int feholdexcept (fenv_t *__envp) __attribute__ ((__nothrow__ , __leaf__)); extern int fesetenv (const fenv_t *__envp) __attribute__ ((__nothrow__ , __leaf__)); extern int feupdateenv (const fenv_t *__envp) __attribute__ ((__nothrow__ , __leaf__)); # 133 "/usr/include/fenv.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_FENV_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 123 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 207 "/usr/include/string.h" 3 4 # 232 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 259 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 278 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 311 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 338 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 393 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 423 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 441 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 485 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 513 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 532 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 555 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 642 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/memory.h" 1 3 4 # 25 "/usr/include/memory.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/memory.h" 2 3 4 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 123 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 207 "/usr/include/string.h" 3 4 # 232 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 259 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 278 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 311 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 338 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 393 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 423 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 441 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 485 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 513 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 532 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 555 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 642 "/usr/include/string.h" 3 4 # 30 "/usr/include/memory.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/times.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 29 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 25 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/pwd.h" 2 3 4 # 73 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 95 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (const char *__name); # 140 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/float.h" 1 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/param.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 1 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 144 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 161 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 145 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 149 "/usr/include/limits.h" 2 3 4 # 170 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed/limits.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 103 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; # 57 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 # 75 "/usr/include/signal.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 151 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 301 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 169 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 197 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 217 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 253 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 254 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 311 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 335 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 341 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 351 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 358 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 361 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 396 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 397 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 29 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/param.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/param.h" 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/param.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 25 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdint.h" 2 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 144 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 145 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 160 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 270 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 297 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 343 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 344 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 377 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 114 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 138 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 175 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 203 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 220 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 244 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 262 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 284 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 197 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 224 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 355 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 100 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 356 "/usr/include/netinet/in.h" 2 3 4 # 364 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 376 "/usr/include/netinet/in.h" 2 3 4 # 491 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 618 "/usr/include/netinet/in.h" 3 4 # 28 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/netdb.h" 2 3 4 # 42 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 43 "/usr/include/netdb.h" 2 3 4 # 53 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 92 "/usr/include/netdb.h" 3 4 extern void herror (const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (const char *__name); # 155 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (const char *__name, int __af); # 167 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 198 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (const char *__name); # 237 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (const char *__name, const char *__proto); extern struct servent *getservbyport (int __port, const char *__proto); # 308 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (const char *__restrict __name, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (const char *__name); extern struct protoent *getprotobynumber (int __proto); # 374 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 395 "/usr/include/netdb.h" 3 4 extern int setnetgrent (const char *__netgroup); extern void endnetgrent (void); # 412 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 423 "/usr/include/netdb.h" 3 4 extern int innetgr (const char *__netgroup, const char *__host, const char *__user, const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 451 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p); # 463 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 479 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p); # 491 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 505 "/usr/include/netdb.h" 3 4 extern int ruserok (const char *__rhost, int __suser, const char *__remuser, const char *__locuser); # 515 "/usr/include/netdb.h" 3 4 extern int ruserok_af (const char *__rhost, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 528 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, const char *__remuser, const char *__locuser); # 539 "/usr/include/netdb.h" 3 4 extern int iruserok_af (const void *__raddr, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 551 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 560 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 662 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (const char *__restrict __name, const char *__restrict __service, const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 713 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 22 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/search.h" 2 3 4 # 44 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (const void *, const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 87 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 118 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (const void *__key, void *const *__rootp, __compar_fn_t __compar); extern void *tdelete (const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (const void *__nodep, VISIT __value, int __level); extern void twalk (const void *__root, __action_fn_t __action); # 164 "/usr/include/search.h" 3 4 extern void *lfind (const void *__key, const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 25 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 27 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 29 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 56 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 72 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 190 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/user.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/user.h" 3 4 # 1 "/usr/include/unistd.h" 1 3 4 # 27 "/usr/include/unistd.h" 3 4 # 202 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 203 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 207 "/usr/include/unistd.h" 2 3 4 # 226 "/usr/include/unistd.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 227 "/usr/include/unistd.h" 2 3 4 # 255 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; # 267 "/usr/include/unistd.h" 3 4 typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 287 "/usr/include/unistd.h" 3 4 extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 304 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 334 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 353 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; # 376 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 417 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 432 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 444 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 469 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 511 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 525 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 543 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 598 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 610 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 646 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 672 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 689 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 722 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 778 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 893 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 58 "/usr/include/getopt.h" 3 4 extern char *optarg; # 72 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 151 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 894 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); # 991 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 1015 "/usr/include/unistd.h" 3 4 extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1038 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1059 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1080 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1103 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1134 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1172 "/usr/include/unistd.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/user.h" 2 3 4 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; __extension__ unsigned long long int rip; __extension__ unsigned long long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { __extension__ unsigned long long int r15; __extension__ unsigned long long int r14; __extension__ unsigned long long int r13; __extension__ unsigned long long int r12; __extension__ unsigned long long int rbp; __extension__ unsigned long long int rbx; __extension__ unsigned long long int r11; __extension__ unsigned long long int r10; __extension__ unsigned long long int r9; __extension__ unsigned long long int r8; __extension__ unsigned long long int rax; __extension__ unsigned long long int rcx; __extension__ unsigned long long int rdx; __extension__ unsigned long long int rsi; __extension__ unsigned long long int rdi; __extension__ unsigned long long int orig_rax; __extension__ unsigned long long int rip; __extension__ unsigned long long int cs; __extension__ unsigned long long int eflags; __extension__ unsigned long long int rsp; __extension__ unsigned long long int ss; __extension__ unsigned long long int fs_base; __extension__ unsigned long long int gs_base; __extension__ unsigned long long int ds; __extension__ unsigned long long int es; __extension__ unsigned long long int fs; __extension__ unsigned long long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; __extension__ unsigned long long int u_tsize; __extension__ unsigned long long int u_dsize; __extension__ unsigned long long int u_ssize; __extension__ unsigned long long int start_code; __extension__ unsigned long long int start_stack; __extension__ long long int signal; int reserved; __extension__ union { struct user_regs_struct* u_ar0; __extension__ unsigned long long int __u_ar0_word; }; __extension__ union { struct user_fpregs_struct* u_fpstate; __extension__ unsigned long long int __u_fpstate_word; }; __extension__ unsigned long long int magic; char u_comm [32]; __extension__ unsigned long long int u_debugreg [8]; }; # 34 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 typedef unsigned long long elf_greg_t; # 49 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 63 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 82 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 131 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 158 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 176 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 180 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; __extension__ union { long int ru_maxrss; __syscall_slong_t __ru_maxrss_word; }; __extension__ union { long int ru_ixrss; __syscall_slong_t __ru_ixrss_word; }; __extension__ union { long int ru_idrss; __syscall_slong_t __ru_idrss_word; }; __extension__ union { long int ru_isrss; __syscall_slong_t __ru_isrss_word; }; __extension__ union { long int ru_minflt; __syscall_slong_t __ru_minflt_word; }; __extension__ union { long int ru_majflt; __syscall_slong_t __ru_majflt_word; }; __extension__ union { long int ru_nswap; __syscall_slong_t __ru_nswap_word; }; __extension__ union { long int ru_inblock; __syscall_slong_t __ru_inblock_word; }; __extension__ union { long int ru_oublock; __syscall_slong_t __ru_oublock_word; }; __extension__ union { long int ru_msgsnd; __syscall_slong_t __ru_msgsnd_word; }; __extension__ union { long int ru_msgrcv; __syscall_slong_t __ru_msgrcv_word; }; __extension__ union { long int ru_nsignals; __syscall_slong_t __ru_nsignals_word; }; __extension__ union { long int ru_nvcsw; __syscall_slong_t __ru_nvcsw_word; }; __extension__ union { long int ru_nivcsw; __syscall_slong_t __ru_nivcsw_word; }; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 328 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 88 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 25 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/unistd.h" 2 3 4 # 202 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 203 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 207 "/usr/include/unistd.h" 2 3 4 # 217 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 218 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 227 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 255 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 287 "/usr/include/unistd.h" 3 4 extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 304 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 334 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 353 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; # 376 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 417 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 432 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 444 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 469 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 511 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 525 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 543 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 598 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 610 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 646 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 672 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); # 689 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 722 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 778 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 893 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 58 "/usr/include/getopt.h" 3 4 extern char *optarg; # 72 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 151 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 894 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); # 991 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 1015 "/usr/include/unistd.h" 3 4 extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1038 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1059 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1080 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1103 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1134 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1172 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 22 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdint.h" 1 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 4 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stdint.h" 2 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 51 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 66 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 28 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 144 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 145 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 160 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 270 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 297 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 343 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 344 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 377 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 40 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 114 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 138 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 175 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 203 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 220 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 244 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 262 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 284 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 197 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 224 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 355 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 100 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 356 "/usr/include/netinet/in.h" 2 3 4 # 364 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 376 "/usr/include/netinet/in.h" 2 3 4 # 491 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 618 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.headers/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/config.headers/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.headers/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.headers/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.headers -o /tmp/petsc-h9mPvE/config.headers/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.headers -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.headers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.headers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest sh: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest sh: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest sh: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest Executing: /tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails/conftest sh: Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST checkMemcmp from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:78) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:78) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-h9mPvE/config.functions sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.functions/conftest sh: /tmp/petsc-h9mPvE/config.functions/conftest Executing: /tmp/petsc-h9mPvE/config.functions/conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysinfo(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysinfo) || defined (__stub___sysinfo) choke me #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error parsing input file /tmp/petsc-h9mPvE/config.functions/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error parsing input file /tmp/petsc-h9mPvE/config.functions/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {"/tmp/petsc-h9mPvE/config.functions/conftest.c", line 13: catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ 1 catastrophic error detected in the compilation of "/tmp/petsc-h9mPvE/config.functions/conftest.c". Compilation terminated. "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 13: catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) Aborted (core dumped) /tmp/petsc-h9mPvE/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for function vprintf sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘vprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vprintf) || defined (__stub___vprintf) choke me #else vprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_VPRINTF" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ================================================================================ TEST checkVFPrintf from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:132) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:132) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for function vfprintf sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘vfprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vfprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vfprintf) || defined (__stub___vfprintf) choke me #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_VFPRINTF" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ================================================================================ TEST checkVSNPrintf from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:139) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:139) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for function _vsnprintf sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Checking for function vsnprintf sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘vsnprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) choke me #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_VSNPRINTF" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ================================================================================ TEST checkNanosleep from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:183) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:183) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:159) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:159) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.functions/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -g -fPIC /tmp/petsc-h9mPvE/config.functions/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.functions/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.functions/conftest -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:169) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:169) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error parsing input file /tmp/petsc-h9mPvE/config.functions/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error parsing input file /tmp/petsc-h9mPvE/config.functions/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {"/tmp/petsc-h9mPvE/config.functions/conftest.c", line 6: warning: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 6: error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 8: warning: statement is unreachable return 0; ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 6: warning: variable "ierr" was set but never used int ierr; void *p; ierr = free(p); return 0; ^ 1 error detected in the compilation of "/tmp/petsc-h9mPvE/config.functions/conftest.c". "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 6: warning: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 6: error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 8: warning: statement is unreachable return 0; ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 6: warning: variable "ierr" was set but never used int ierr; void *p; ierr = free(p); return 0; ^ terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) Aborted (core dumped) /tmp/petsc-h9mPvE/config.functions/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:175) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:175) Checks whether the variable argument list functionality is working sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char rand(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_rand) || defined (__stub___rand) choke me #else rand(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘getdomainname’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:919:12: note: previous declaration of ‘getdomainname’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getdomainname) || defined (__stub___getdomainname) choke me #else getdomainname(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETDOMAINNAME" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_sleep' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_sleep' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_sleep' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_sleep' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_snprintf) || defined (__stub___snprintf) choke me #else snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char realpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char realpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_realpath) || defined (__stub___realpath) choke me #else realpath(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlsym sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlsym(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlsym(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlsym) || defined (__stub___dlsym) choke me #else dlsym(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_DLSYM" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘bzero’ /tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char bzero(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char bzero(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_bzero) || defined (__stub___bzero) choke me #else bzero(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_getcwd' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘getwd’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:525:14: note: previous declaration of ‘getwd’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETWD" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char uname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char uname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_uname) || defined (__stub___uname) choke me #else uname(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_lseek' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_lseek' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_lseek' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_lseek' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘sleep’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:444:21: note: previous declaration of ‘sleep’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sleep) || defined (__stub___sleep) choke me #else sleep(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SLEEP" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_access' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_access' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_access' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_access' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘lseek’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:334:16: note: previous declaration of ‘lseek’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_lseek) || defined (__stub___lseek) choke me #else lseek(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_LSEEK" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function usleep sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘usleep’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:460:12: note: previous declaration of ‘usleep’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char usleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char usleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_usleep) || defined (__stub___usleep) choke me #else usleep(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_USLEEP" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memset' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlclose sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlclose(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlclose(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlclose) || defined (__stub___dlclose) choke me #else dlclose(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_DLCLOSE" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘gethostname’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:901:12: note: previous declaration of ‘gethostname’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostname) || defined (__stub___gethostname) choke me #else gethostname(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETHOSTNAME" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char clock(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char clock(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_clock) || defined (__stub___clock) choke me #else clock(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function get_nprocs sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char get_nprocs(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) choke me #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GET_NPROCS" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘access’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:287:12: note: previous declaration of ‘access’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_access) || defined (__stub___access) choke me #else access(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_ACCESS" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_snprintf' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlerror(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlerror(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlerror) || defined (__stub___dlerror) choke me #else dlerror(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char mkstemp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char mkstemp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_mkstemp) || defined (__stub___mkstemp) choke me #else mkstemp(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘tau_fork’ In file included from conftest.inst.c:1:0: /home/hills/seska/packages/tau/include/Profile/Profiler.h:37:7: note: previous declaration of ‘tau_fork’ was here /tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_fork) || defined (__stub___fork) choke me #else fork(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_FORK" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘getpagesize’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:1000:12: note: previous declaration of ‘getpagesize’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETPAGESIZE" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sbreak' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sbreak' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sbreak' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sbreak' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memalign(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memalign) || defined (__stub___memalign) choke me #else memalign(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigset) || defined (__stub___sigset) choke me #else sigset(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_fullpath' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_fullpath' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_fullpath' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_fullpath' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘getcwd’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:511:14: note: previous declaration of ‘getcwd’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETCWD" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) choke me #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gettimeofday(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gettimeofday(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) choke me #else gettimeofday(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘readlink’ In file included from /home/hills/seska/packages/tau/include/Profile/Profiler.h:29:0, from conftest.inst.c:1: /usr/include/unistd.h:831:16: note: previous declaration of ‘readlink’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_readlink) || defined (__stub___readlink) choke me #else readlink(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_READLINK" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sigaction(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigaction(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sigaction) || defined (__stub___sigaction) choke me #else sigaction(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function strcasecmp sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘strcasecmp’ /tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char strcasecmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char strcasecmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) choke me #else strcasecmp(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_STRCASECMP" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlopen sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char dlopen(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_dlopen) || defined (__stub___dlopen) choke me #else dlopen(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_DLOPEN" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char drand48(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char drand48(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_drand48) || defined (__stub___drand48) choke me #else drand48(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char socket(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char socket(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_socket) || defined (__stub___socket) choke me #else socket(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: error: conflicting types for ‘memmove’ /tmp/petsc-h9mPvE/config.functions/conftest.c:10:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char memmove(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memmove(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_memmove) || defined (__stub___memmove) choke me #else memmove(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char signal(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char signal(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_signal) || defined (__stub___signal) choke me #else signal(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char popen(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char popen(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_popen) || defined (__stub___popen) choke me #else popen(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getrusage(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getrusage(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getrusage) || defined (__stub___getrusage) choke me #else getrusage(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char times(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char times(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_times) || defined (__stub___times) choke me #else times(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `_intel_fast_memcpy' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char time(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_time) || defined (__stub___time) choke me #else time(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sysctlbyname sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysctlbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) choke me #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sysctlbyname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) choke me #else sysctlbyname(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpwuid(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpwuid(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpwuid) || defined (__stub___getpwuid) choke me #else getpwuid(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/functions.py:29) TESTING: check from config.functions(config/BuildSystem/config/functions.py:29) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `stricmp' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `stricmp' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `stricmp' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `stricmp' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.headers/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.headers/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.headers/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: /tmp/petsc-h9mPvE/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. make: *** [all] Error 1 ret = 256 error message = {/tmp/petsc-h9mPvE/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST check_siginfo_t from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-h9mPvE/config.types sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:13:1: error: unknown type name ‘siginfo_t’ } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ /tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.headers /tmp/petsc-h9mPvE/config.types/conftest.c sh: # 1 "/tmp/petsc-h9mPvE/config.types/conftest.c" # 1 "" # 1 "/tmp/petsc-h9mPvE/config.types/conftest.c" # 1 "/tmp/petsc-h9mPvE/config.types/confdefs.h" 1 # 2 "/tmp/petsc-h9mPvE/config.types/conftest.c" 2 # 1 "/tmp/petsc-h9mPvE/config.types/conffix.h" 1 # 3 "/tmp/petsc-h9mPvE/config.types/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 341 "/usr/include/features.h" 3 4 # 1 "/usr/include/stdc-predef.h" 1 3 4 # 30 "/usr/include/stdc-predef.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/predefs.h" 1 3 4 # 31 "/usr/include/stdc-predef.h" 2 3 4 # 342 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 385 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 386 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 395 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 396 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 130 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 131 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 1 3 4 # 213 "/usr/lib/gcc/x86_64-linux-gnu/4.7/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 44 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 64 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 96 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 106 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 118 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 131 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 63 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 115 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 202 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-h9mPvE/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; x = I; ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:115) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:115) Check for complex numbers in namespace std Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -g -fPIC /tmp/petsc-h9mPvE/config.types/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -g -fPIC /tmp/petsc-h9mPvE/config.types/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/config.types/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.types/conftest -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/config.types/conftest -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/config.types/conftest -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:136) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:136) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.compilers -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.compilers -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkFortranDReal from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:148) TESTING: checkFortranDReal from config.types(config/BuildSystem/config/types.py:148) Checks whether dreal is provided in Fortran, and if not defines MISSING_DREAL Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- gfortran Error: Full Command attempted is -- gfortran -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {conftest.inst.F:12.16: d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) /tmp/petsc-h9mPvE/config.types/conftest.F:3.16: d = dreal(3.0) 1 Error: Type of argument 'a' in call to 'dreal' at (1) should be COMPLEX(8), not REAL(4) make: *** [all] Error 1 } Source: program main double precision d d = dreal(3.0) end Compile failed inside link Defined "MISSING_DREAL" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:156) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:156) Checks for working const, and if not found defines it to empty string sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:212) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:212) If the machine is big endian, defines WORDS_BIGENDIAN sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types PDT: Error parsing input file /tmp/petsc-h9mPvE/config.types/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types PDT: Error parsing input file /tmp/petsc-h9mPvE/config.types/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {"/tmp/petsc-h9mPvE/config.types/conftest.c", line 11: error: identifier "not" is undefined not big endian ^ "/tmp/petsc-h9mPvE/config.types/conftest.c", line 11: error: expected a ";" not big endian ^ "/tmp/petsc-h9mPvE/config.types/conftest.c", line 11: warning: variable "big" was declared but never referenced not big endian ^ 2 errors detected in the compilation of "/tmp/petsc-h9mPvE/config.types/conftest.c". "/tmp/petsc-h9mPvE/config.types/conftest.c", line 11: error: identifier "not" is undefined not big endian ^ "/tmp/petsc-h9mPvE/config.types/conftest.c", line 11: error: expected a ";" not big endian ^ terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) Aborted (core dumped) /tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:11:3: error: unknown type name ‘not’ /tmp/petsc-h9mPvE/config.types/conftest.c:11:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘endian’ make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:265) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:265) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:12:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:12:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:14:9: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:1: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:316) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:316) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.types/conftest.o -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.types/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.types/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.c -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.types -o /tmp/petsc-h9mPvE/config.types/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/config.types/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.types/conftest.c:10:1: error: unknown type name ‘FILE’ /tmp/petsc-h9mPvE/config.types/conftest.c:10:11: warning: initialization makes pointer from integer without a cast [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:15:13: warning: incompatible implicit declaration of built-in function ‘exit’ [enabled by default] /tmp/petsc-h9mPvE/config.types/conftest.c:19:5: warning: incompatible implicit declaration of built-in function ‘fprintf’ [enabled by default] } Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.types/conftest -fPIC -g /tmp/petsc-h9mPvE/config.types/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: /tmp/petsc-h9mPvE/config.types/conftest Executing: /tmp/petsc-h9mPvE/config.types/conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/types.py:362) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:362) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST check from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function handle_sigfpes in library ['fpe'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function socket in library ['socket', 'nsl'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:145) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:145) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for function handle_sigfpes in library ['fpe'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:224) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:224) Check for sin() in libm, the math library Checking for function sin in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); int main() { double x = 0,y; y = sin(x); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C Checking for function floor in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double floor(double); int main() { double x = 0,y; y = floor(x); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C Checking for function log10 in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log10(double); int main() { double x = 0,y; y = log10(x); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C Checking for function pow in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double pow(double, double); int main() { double x = 0,y ; y = pow(x, x); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:240) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:240) Check for erf() in libm, the math library Checking for function erf in library [] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); int main() { double x = 0,y; y = erf(x); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:249) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:249) Check for tgama() in libm, the math library Checking for function tgamma in library [] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); int main() { double x = 0,y; y = tgamma(x); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkCompression from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:258) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:258) Check for libz, the compression library Checking for function compress in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `compress' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `compress' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `compress' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `compress' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Popping language C Checking for function compress in library ['z'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -lz -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Popping language C Checking for function compress in library ['zlib.lib'] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: gcc: error: zlib.lib: No such file or directory gcc: error: zlib.lib: No such file or directory make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {gcc: error: zlib.lib: No such file or directory gcc: error: zlib.lib: No such file or directory make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o zlib.lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); int main() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; return 0; } Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:279) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:279) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for function clock_gettime in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include int main() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/libraries.py:295) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:295) Check for the header and libraries necessary for dynamic library manipulation ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:35) Checks for limits All intermediate test results are stored in /tmp/petsc-h9mPvE/PETSc.utilities.missing sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c:8:7: error: ‘INT_MAX’ undeclared (first use in this function) /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c:8:7: note: each undeclared identifier is reported only once for each function it appears in } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o error message = {/tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c:8:10: error: ‘DBL_MAX’ undeclared (first use in this function) /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c:8:10: note: each undeclared identifier is reported only once for each function it appears in } Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:88) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:88) sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -g -fPIC /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -g -fPIC /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { char test[10]; int err = getdomainname(test,10); ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:110) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:110) sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language Cxx sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -g -fPIC /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -g -fPIC /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cxxparse /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.cc -o conftest.inst.cc Debug: Compiling with Instrumented Code Executing> /usr/bin/g++ -c -g -fPIC conftest.inst.cc -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.cc Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double a; long b=10; srand(b); a=drand48(); ; return 0; } Pushing language CXX Popping language CXX sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/g++ -o /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest -g /tmp/petsc-h9mPvE/PETSc.utilities.missing/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language Cxx ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/missing.py:134) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:134) ================================================================================ TEST configureTimers from PETSc.utilities.timer(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_MICROSOFT_TIME. Checking for function MPI_CRAY_barrier in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `MPI_CRAY_barrier' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `MPI_CRAY_barrier' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `MPI_CRAY_barrier' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `MPI_CRAY_barrier' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for function in library [''] [] Pushing language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.F Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.F sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/gfparse /tmp/petsc-h9mPvE/config.libraries/conftest.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.F -o conftest.inst.F Debug: Compiling with Instrumented Code Executing> gfortran -c -fPIC -g conftest.inst.F -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.F Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC sh: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> gfortran -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for function get_command_argument_ in library [''] ['-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lm', '-lgfortran', '-lm', '-lgfortran', '-lm', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lm', '-lquadmath', '-lm'] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); int main() { get_command_argument_() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); int main() { get_command_argument_() ; return 0; } Popping language C Checking for function getarg_ in library [''] ['-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-L/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-L/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lm', '-lgfortran', '-lm', '-lgfortran', '-lm', '-Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64', '-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7', '-Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt', '-Wl,-rpath,/usr/lib/x86_64-linux-gnu', '-Wl,-rpath,/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lm', '-lquadmath', '-lm'] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); int main() { getarg_() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `getarg_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `getarg_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `getarg_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `getarg_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); int main() { getarg_() ; return 0; } Popping language C Checking for function ipxfargc_ sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function iargc_ sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `iargc_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `iargc_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.functions/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `iargc_' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.functions/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.functions/conftest.c:20: undefined reference to `iargc_' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Checking for function GETARG@16 sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error parsing input file /tmp/petsc-h9mPvE/config.functions/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error: Couldn't create conftest.pdb: Trying the alternate PDT Rose parser based on EDG 4.4: /home/hills/seska/packages/pdt/x86_64//bin/edg44-c-roseparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions PDT: Error parsing input file /tmp/petsc-h9mPvE/config.functions/conftest.c Error: Command(Executable) is -- Error: Full Command attempted is -- /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Compilation Failed Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue ret = 256 error message = {"/tmp/petsc-h9mPvE/config.functions/conftest.c", line 10: error: unrecognized token char GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 10: error: expected a ";" char GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 17: error: unrecognized token #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 17: error: expected a ")" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 17: error: extra text after expected end of preprocessing directive #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 20: error: unrecognized token GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 20: warning: expression has no effect GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 20: error: expected a ";" GETARG@16(); ^ 7 errors detected in the compilation of "/tmp/petsc-h9mPvE/config.functions/conftest.c". "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 10: error: unrecognized token char GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 10: error: expected a ";" char GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 17: error: unrecognized token #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 17: error: expected a ")" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 17: error: extra text after expected end of preprocessing directive #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 20: error: unrecognized token GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 20: warning: expression has no effect GETARG@16(); ^ "/tmp/petsc-h9mPvE/config.functions/conftest.c", line 20: error: expected a ";" GETARG@16(); ^ terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) Aborted (core dumped) /tmp/petsc-h9mPvE/config.functions/conftest.c:10:1: error: stray ‘@’ in program /tmp/petsc-h9mPvE/config.functions/conftest.c:10:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant /tmp/petsc-h9mPvE/config.functions/conftest.c: In function ‘main’: /tmp/petsc-h9mPvE/config.functions/conftest.c:17:27: error: missing ')' after "defined" /tmp/petsc-h9mPvE/config.functions/conftest.c:17:28: error: missing binary operator before token "16" /tmp/petsc-h9mPvE/config.functions/conftest.c:20:1: error: stray ‘@’ in program /tmp/petsc-h9mPvE/config.functions/conftest.c:20:1: error: ‘GETARG’ undeclared (first use in this function) /tmp/petsc-h9mPvE/config.functions/conftest.c:20:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-h9mPvE/config.functions/conftest.c:20:8: error: expected ‘;’ before numeric constant make: *** [all] Error 1 } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for function _gfortran_iargc sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.functions/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.functions/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.functions/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.functions -o /tmp/petsc-h9mPvE/config.functions/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.functions/conftest -fPIC -g /tmp/petsc-h9mPvE/config.functions/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lm -lgfortran -lm -lgfortran -lm -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -lgfortran -lm -lm -lquadmath -lm -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE__GFORTRAN_IARGC" to "1" Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/scalarTypes.py:37) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_ISNAN" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Defined "HAVE_ISINF" to "1" sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Tried Looking for file: conftest.inst.c Error: Command(Executable) is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor Error: Full Command attempted is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Tried Looking for file: conftest.inst.c Error: Command(Executable) is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor Error: Full Command attempted is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o Looking for file: conftest.o error message = {Segmentation fault (core dumped) /home/hills/seska/packages/tau/x86_64/bin/tau_compiler.sh: line 198: 21505 Segmentation fault (core dumped) /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_isnan' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_isnan' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_isnan' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_isnan' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Tried Looking for file: conftest.inst.c Error: Command(Executable) is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor Error: Full Command attempted is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o Looking for file: conftest.o Possible ERROR while running compiler: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Tried Looking for file: conftest.inst.c Error: Command(Executable) is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor Error: Full Command attempted is -- /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.libraries -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -g -finstrument-functions -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o Looking for file: conftest.o error message = {Segmentation fault (core dumped) /home/hills/seska/packages/tau/x86_64/bin/tau_compiler.sh: line 198: 22214 Segmentation fault (core dumped) /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c -o conftest.inst.c -c } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_finite' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_finite' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_finite' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_finite' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest -fPIC -g /tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/scalarTypes.py:73) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:73) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for function bgl_perfctr_void in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C Checking for function ADIOI_BGL_Open in library [''] [] Pushing language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -c -o /tmp/petsc-h9mPvE/config.libraries/conftest.o -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.c sh: Debug: Parsing with PDT Parser Executing> /home/hills/seska/packages/pdt/x86_64/bin/cparse /tmp/petsc-h9mPvE/config.libraries/conftest.c -I/home/hills/seska/packages/tau/include -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries Debug: Instrumenting with TAU Executing> /home/hills/seska/packages/tau/x86_64/bin/tau_instrumentor conftest.pdb /tmp/petsc-h9mPvE/config.libraries/conftest.c -o conftest.inst.c -c Debug: Compiling with Instrumented Code Executing> /usr/bin/gcc -c -fPIC -g conftest.inst.c -I/tmp/petsc-h9mPvE/config.setCompilers -I/tmp/petsc-h9mPvE/config.compilers -I/tmp/petsc-h9mPvE/config.headers -I/tmp/petsc-h9mPvE/PETSc.utilities.cacheDetails -I/tmp/petsc-h9mPvE/config.types -I/tmp/petsc-h9mPvE/config.functions -I/tmp/petsc-h9mPvE/PETSc.utilities.missing -I/tmp/petsc-h9mPvE/PETSc.utilities.scalarTypes -I/tmp/petsc-h9mPvE/config.libraries -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_UNIFY -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DTAU_BFD -DTAU_MPIFILE -DHAVE_GNU_DEMANGLE -DHAVE_TR1_HASH_MAP -DTAU_SS_ALLOC_SUPPORT -DEBS_CLOCK_RES=1 -DTAU_STRSIGNAL_OK -DTAU_TRACK_LD_LOADER -I/home/hills/seska/packages/tau/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/include/openmpi/ompi -I/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -I/tmp/petsc-h9mPvE/config.libraries -o /tmp/petsc-h9mPvE/config.libraries/conftest.o Looking for file: conftest.o Debug: cleaning inst file Executing> /bin/rm -f conftest.inst.c Debug: cleaning PDB file Executing> /bin/rm -f conftest.pdb Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); int main() { ADIOI_BGL_Open() ; return 0; } Pushing language C Popping language C sh: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Executing: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl sh: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Possible ERROR while running linker: /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status make: *** [all] Error 1 output: Debug: Moving these libraries to the end of the link line: -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Reverting to a Regular Make To suppress this message and revert automatically, please add -optRevert to your TAU_OPTIONS environment variable Press Enter to continue Debug: PDT failed, switching to compiler-based instrumentation Debug: Using compiler-based instrumentation Debug: Moving these libraries to the end of the link line: Debug: Linking with TAU Options Executing> /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt Error: Tried looking for file: /tmp/petsc-h9mPvE/config.libraries/conftest Error: Failed to link with TAU options Error: Command(Executable) is -- /usr/bin/gcc Error: Full Command attempted is -- /usr/bin/gcc -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -Wl,--export-dynamic -lrt -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl -lm -L/usr/lib/gcc/x86_64-linux-gnu/4.7/ -lstdc++ -lgcc_s -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -ltau-mpi-pdt ret = 256 error message = {/tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status /tmp/petsc-h9mPvE/config.libraries/conftest.o: In function `main': /tmp/petsc-h9mPvE/config.libraries/conftest.c:7: undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status make: *** [all] Error 1 } Pushing language C Popping language C in /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -o /tmp/petsc-h9mPvE/config.libraries/conftest -fPIC -g /tmp/petsc-h9mPvE/config.libraries/conftest.o -ldl -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -lTauMpi-mpi-pdt -lmpi -lmpi_cxx -lmpi_f90 -lmpi_f77 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -ltau-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -lbfd -liberty -lrt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -lstdc++ -lgcc_s -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib -L/home/hills/seska/packages/tau/x86_64/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -L/home/hills/seska/packages/tau/x86_64/binutils-2.23.2/lib64 -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -L/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -L/home/hills/seska/packages/tau/x86_64/lib/static-mpi-pdt -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.7 -L/usr/lib/gcc/x86_64-linux-gnu/4.7 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/home/hills/seska/packages/petsc/linux-gnu-cxx-opt/lib -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); int main() { ADIOI_BGL_Open() ; return 0; } Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/hills/seska-hills/packages/petsc-3.4.2/config/PETSc/utilities/libraryOptions.py:92) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:92) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/packages/MPI.py:744) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:744) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI sh: uname -s Executing: uname -s sh: Linux Looking for MPI in directory starting with openmpi Found a copy of MPI in openmpi-1.6.5 Looking for MPI in directory starting with openmpi Found a copy of MPI in openmpi-1.6.5 Pushing language C sh: uname -s Executing: uname -s sh: Linux All intermediate test results are stored in /tmp/petsc-h9mPvE/config.packages.MPI Popping language C Pushing language Cxx sh: uname -s Executing: uname -s sh: Linux Popping language Cxx Pushing language FC Popping language FC Have to rebuild MPI, /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/args.petsc != /home/hills/seska/packages/petsc/linux-gnu-cxx-opt/conf/MPI =============================================================================== Configuring OPENMPI/MPI; this may take several minutes =============================================================================== sh: cd /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 && ./configure --prefix=/home/hills/seska/packages/petsc/linux-gnu-cxx-opt --with-rsh=ssh CC="/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh" CFLAGS=" -fPIC -g " --enable-shared CXX="/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh" CXXFLAGS=" -g -fPIC " F77="/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh" FFLAGS=" -fPIC -g " FC="/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh" FCFLAGS=" -fPIC -g " --disable-vt Executing: cd /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 && ./configure --prefix=/home/hills/seska/packages/petsc/linux-gnu-cxx-opt --with-rsh=ssh CC="/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh" CFLAGS=" -fPIC -g " --enable-shared CXX="/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh" CXXFLAGS=" -g -fPIC " F77="/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh" FFLAGS=" -fPIC -g " FC="/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh" FCFLAGS=" -fPIC -g " --disable-vt sh: ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for gcc... /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh accepts -g... yes checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to accept ISO C89... none needed checking how to run the C preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking how to create a ustar tar archive... gnutar checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... gcc3 checking whether make supports nested variables... yes *** Checking versions checking Open MPI version... 1.6.5 checking Open MPI release date... Jun 26, 2013 checking Open MPI Subversion repository version... r28673 checking Open MPI Run-Time Environment version... 1.6.5 checking Open MPI Run-Time Environment release date... Jun 26, 2013 checking Open MPI Run-Time Environment Subversion repository version... r28673 checking Open Portable Access Layer version... 1.6.5 checking Open Portable Access Layer release date... Jun 26, 2013 checking Open Portable Access Layer Subversion repository version... r28673 *** Initialization, setup configure: builddir: /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 configure: srcdir: /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 installing to directory "/home/hills/seska/packages/petsc/linux-gnu-cxx-opt" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking if want heterogeneous support... no checking if want trace file debugging... no checking if want fault tolerance... Disabled fault tolerance checking if want IPv6 support... no checking if want package/brand string... Open MPI hills@riker Distribution checking if want ident string... 1.6.5 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 *** ORTE Configuration options checking if want full RTE support... yes checking if want orterun "--prefix" behavior to be enabled by default... no *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... no checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran 77 bindings... yes checking if want Fortran 90 bindings... yes checking Fortran 90 bindings "size"... small checking if want PMPI... yes checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime checking max supported array dimension in F90 MPI bindings... 4 ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for gcc... (cached) /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh checking whether we are using the GNU C compiler... (cached) yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh accepts -g... (cached) yes checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to accept ISO C89... (cached) none needed checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh and cc understand -c and -o together... yes checking for the C compiler vendor... gnu checking for ANSI C header files... (cached) yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -finline-functions... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -fno-strict-aliasing... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports __builtin_expect... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports __builtin_prefetch... yes checking for C optimization flags... -DNDEBUG -fPIC -g -finline-functions -fno-strict-aliasing checking for Interix environment... no checking for C ident string support... #ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for uint128_t... no checking for long long... yes checking for long double... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of wchar_t... 4 checking alignment of _Bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 8 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 16 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 16 checking alignment of void *... 8 checking for C bool type... no checking size of _Bool... 1 checking for inline... __inline__ checking for C/C++ restrict keyword... __restrict checking for weak symbol support... no checking for functional offsetof macro... yes *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh accepts -g... yes checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh... gcc3 checking how to run the C++ preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E checking for the C++ compiler vendor... gnu checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports -finline-functions... yes checking if C and C++ are link compatible... yes checking for C++ optimization flags... -DNDEBUG -g -fPIC -finline-functions checking size of bool... 1 checking alignment of bool... 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh accepts -g... (cached) yes checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh... (cached) gcc3 checking how to run the C++ preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E checking if C++ compiler works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports -finline-functions... yes checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -DNDEBUG -g -fPIC -finline-functions checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... yes checking for the C++ compiler vendor... (cached) gnu checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ ident string support... #ident checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports __builtin_expect... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports __builtin_prefetch... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports const_cast<> properly... yes *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... no checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking for compiler familyid... 1 checking for compiler familyname... GNU checking for compiler version... 263939 checking for compiler version_str... 4.7.3 *** Assembler checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... gcc3 checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking for fgrep... /bin/grep -F checking if need to remove -g from CCASFLAGS... no checking whether to enable smp locks... yes checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports GCC inline assembly... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports DEC inline assembly... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports XLC inline assembly... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports GCC inline assembly... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports DEC inline assembly... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for asssembly architecture... AMD64 checking for perl... perl checking for pre-built assembly file... yes (atomic-amd64-linux.s) checking for atomic assembly filename... atomic-amd64-linux.s *** Fortran 77 compiler checking whether we are using the GNU Fortran 77 compiler... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh accepts -g... yes *** Fortran 90/95 compiler checking whether we are using the GNU Fortran compiler... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh accepts -g... yes checking if Fortran 77 compiler works... yes checking /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh external symbol convention... single underscore checking if C and Fortran 77 are link compatible... yes checking to see if F77 compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpif77/mpif90 compilers need additional linker flags... none checking if Fortran 77 compiler supports CHARACTER... yes checking size of Fortran 77 CHARACTER... 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... 1 checking if Fortran 77 compiler supports LOGICAL... yes checking size of Fortran 77 LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 4 checking if Fortran 77 compiler supports LOGICAL*1... yes checking size of Fortran 77 LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 checking if Fortran 77 compiler supports LOGICAL*2... yes checking size of Fortran 77 LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 2 checking if Fortran 77 compiler supports LOGICAL*4... yes checking size of Fortran 77 LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 4 checking if Fortran 77 compiler supports LOGICAL*8... yes checking size of Fortran 77 LOGICAL*8... 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... 8 checking if Fortran 77 compiler supports INTEGER... yes checking size of Fortran 77 INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 4 checking if Fortran 77 compiler supports INTEGER*1... yes checking size of Fortran 77 INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 checking if Fortran 77 compiler supports INTEGER*2... yes checking size of Fortran 77 INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 2 checking if Fortran 77 compiler supports INTEGER*4... yes checking size of Fortran 77 INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 4 checking if Fortran 77 compiler supports INTEGER*8... yes checking size of Fortran 77 INTEGER*8... 8 checking for C type corresponding to INTEGER*8... long long checking alignment of Fortran INTEGER*8... 8 checking if Fortran 77 compiler supports INTEGER*16... yes checking size of Fortran 77 INTEGER*16... 16 checking for C type corresponding to INTEGER*16... not found checking if Fortran 77 compiler supports REAL... yes checking size of Fortran 77 REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 4 checking if Fortran 77 compiler supports REAL*2... no checking if Fortran 77 compiler supports REAL*4... yes checking size of Fortran 77 REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 4 checking if Fortran 77 compiler supports REAL*8... yes checking size of Fortran 77 REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 8 checking if Fortran 77 compiler supports REAL*16... yes checking size of Fortran 77 REAL*16... 16 checking for C type corresponding to REAL*16... long double checking alignment of Fortran REAL*16... 16 checking for C type matching bit representation of REAL*16... pending checking if long double == REAL*16... no checking for C type matching bit representation of REAL*16... no checking if Fortran 77 compiler supports DOUBLE PRECISION... yes checking size of Fortran 77 DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 8 checking if Fortran 77 compiler supports COMPLEX... yes checking size of Fortran 77 COMPLEX... 8 checking alignment of Fortran COMPLEX... 4 checking if Fortran 77 compiler supports DOUBLE COMPLEX... yes checking size of Fortran 77 DOUBLE COMPLEX... 16 checking alignment of Fortran DOUBLE COMPLEX... 8 checking if Fortran 77 compiler supports COMPLEX*8... yes checking size of Fortran 77 COMPLEX*8... 8 checking alignment of Fortran COMPLEX*8... 4 checking if Fortran 77 compiler supports COMPLEX*16... yes checking size of Fortran 77 COMPLEX*16... 16 checking alignment of Fortran COMPLEX*16... 8 checking if Fortran 77 compiler supports COMPLEX*32... yes checking size of Fortran 77 COMPLEX*32... 32 checking alignment of Fortran COMPLEX*32... 16 checking for max Fortran MPI handle index... ( 2147483647 < 2147483647 ? 2147483647 : 2147483647 ) checking Fortran value for .TRUE. logical type... 1 checking for correct handling of Fortran logical arrays... yes checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs checking if Fortran compiler works... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh and /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh compilers are compatible... yes checking for extra arguments to build a shared library... none needed checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking to see if F90 compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking for Fortran 90 compiler module include flag... -I checking if Fortran 90 compiler supports CHARACTER... yes checking size of Fortran 90 CHARACTER... 1 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL... yes checking size of Fortran 90 LOGICAL... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*1... yes checking size of Fortran 90 LOGICAL*1... 1 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*2... yes checking size of Fortran 90 LOGICAL*2... 2 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*4... yes checking size of Fortran 90 LOGICAL*4... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports LOGICAL*8... yes checking size of Fortran 90 LOGICAL*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER... yes checking size of Fortran 90 INTEGER... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*1... yes checking size of Fortran 90 INTEGER*1... 1 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*2... yes checking size of Fortran 90 INTEGER*2... 2 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*4... yes checking size of Fortran 90 INTEGER*4... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*8... yes checking size of Fortran 90 INTEGER*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports INTEGER*16... yes checking size of Fortran 90 INTEGER*16... 16 checking if Fortran 90 compiler supports REAL... yes checking size of Fortran 90 REAL... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports REAL*2... no checking if Fortran 90 compiler supports REAL*4... yes checking size of Fortran 90 REAL*4... 4 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports REAL*8... yes checking size of Fortran 90 REAL*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports REAL*16... yes checking size of Fortran 90 REAL*16... 16 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports DOUBLE PRECISION... yes checking size of Fortran 90 DOUBLE PRECISION... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX... yes checking size of Fortran 90 COMPLEX... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX*8... yes checking size of Fortran 90 COMPLEX*8... 8 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX*16... yes checking size of Fortran 90 COMPLEX*16... 16 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports COMPLEX*32... yes checking size of Fortran 90 COMPLEX*32... 32 checking if Fortran 77 and 90 type sizes match... yes checking if Fortran 90 compiler supports DOUBLE COMPLEX... yes checking size of Fortran 90 DOUBLE COMPLEX... 16 checking if Fortran 77 and 90 type sizes match... yes checking Fortran 90 kind of MPI_INTEGER_KIND (selected_int_kind(9))... 4 checking Fortran 90 kind of MPI_ADDRESS_KIND (selected_int_kind(18))... 8 checking Fortran 90 kind of MPI_OFFSET_KIND (selected_int_kind(18))... (cached) 8 ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking for memory.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking sys/statfs.h usability... yes checking sys/statfs.h presence... yes checking for sys/statfs.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking crt_externs.h usability... no checking crt_externs.h presence... no checking for crt_externs.h... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking for sys/mount.h... yes checking for sys/sysctl.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes checking for siginfo_t.si_band... yes ============================================================================ == Library and Function tests ============================================================================ checking if we need -lutil for openpty... not found checking for openpty... no checking for gethostbyname in -lnsl... yes checking for socket in -lsocket... no checking if we need -lrt for sched_yield... no checking for sched_yield... yes checking if we need -lgen for dirname... no checking for dirname... yes checking if we need -lm for ceil... no checking for ceil... yes checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... (cached) no checking for isatty... no checking for getpwuid... yes checking for fork... no checking for waitpid... yes checking for execve... no checking for pipe... no checking for ptsname... yes checking for setsid... no checking for mmap... yes checking for tcgetpgrp... no checking for posix_memalign... yes checking for strsignal... no checking for sysconf... no checking for syslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... no checking for socketpair... yes checking for strncpy_s... no checking for _strdup... no checking for usleep... no checking for mkfifo... yes checking for htonl define... no checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking checking for type of MPI_Offset... long long checking checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for _SC_NPROCESSORS_ONLN... yes checking whether byte ordering is bigendian... no checking for broken qsort... no checking if word-sized integers must be word-size aligned... no checking if C compiler and POSIX threads work as is... yes checking if C++ compiler and POSIX threads work as is... yes checking if F77 compiler and POSIX threads work as is... yes checking for PTHREAD_MUTEX_ERRORCHECK_NP... no checking for PTHREAD_MUTEX_ERRORCHECK... no checking for working POSIX threads package... yes checking if C compiler and Solaris threads work... no checking if C++ compiler and Solaris threads work... no checking if F77 compiler and Solaris threads work... no checking for working Solaris threads package... no checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... no checking if want OPAL thread support... undef checking if want fault tolerance thread... Disabled (fault tolerance disabled --without-ft) checking if want MPI_THREAD_MULTIPLE support... Disabled checking whether ln -s works... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... (cached) gcc3 checking for flex... no checking for lex... no checking for flavor of ps to use... ps -A -o fname,pid,user checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes checking whether RLIMIT_NPROC is declared... yes checking whether RLIMIT_MEMLOCK is declared... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--prefix=/home/hills/seska/packages/petsc/linux-gnu-cxx-opt' '--with-rsh=ssh' 'CC=/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh' 'CFLAGS= -fPIC -g ' '--enable-shared' 'CXX=/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh' 'CXXFLAGS= -g -fPIC ' 'F77=/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh' 'FFLAGS= -fPIC -g ' 'FC=/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh' 'FCFLAGS= -fPIC -g ' '--disable-vt' checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes ==> Pre-emptively configuring the hwloc framework to satisfy dependencies. +++ Configuring MCA framework hwloc checking for no configure components in framework hwloc... checking for m4 configure components in framework hwloc... hwloc132, external --- MCA component hwloc:hwloc132 (m4 configuration macro) checking for MCA component hwloc:hwloc132 compile mode... static checking hwloc building mode... embedded configure: hwloc builddir: /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc configure: hwloc srcdir: /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... opal/mca/hwloc/hwloc132/hwloc/ checking for hwloc symbol prefix... opal_hwloc132_ checking size of void *... (cached) 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for strncasecmp... no checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking for sys/mman.h... (cached) yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking for fabsf in -lm... yes checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... (cached) yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking for sysctl... yes checking for sysctlbyname... no checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... no checking for working CPU_SET_S... no checking for working _syscall3... no checking for KERRIGHED... no checking for lib... no checking for bash... /bin/bash checking for ffs... no checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking for malloc.h... (cached) yes checking for getpagesize... no checking for memalign... yes checking for posix_memalign... (cached) yes checking for sys/utsname.h... (cached) yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for library containing pthread_getthrds_np... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking for cpuid... yes checking whether hwloc configure succeeded... yes checking if MCA component hwloc:hwloc132 can compile... yes --- MCA component hwloc:external (m4 configuration macro) checking for MCA component hwloc:external compile mode... static checking if MCA component hwloc:external can compile... no checking for winning hwloc component header file... opal/mca/hwloc/hwloc132/hwloc132.h checking for winning hwloc component additional CPPFLAGS... -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include checking for winning hwloc component additional LDFLAGS... none checking for winning hwloc component additional LIBS... none checking for winning hwloc component additional wrapper CPPFLAGS... none checking for winning hwloc component additional wrapper LDFLAGS... none checking for winning hwloc component additional wrapper LIBS... -lm <== Pre-emptive hwloc framework configuration complete. <== We now return you to your regularly scheduled programming. checking __NetBSD__... no checking __FreeBSD__... no checking __OpenBSD__... no checking __DragonFly__... no checking __386BSD__... no checking __bsdi__... no checking __APPLE__... no checking __linux__... yes checking __sun__... no checking for struct sockaddr_in... (cached) yes checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... all checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi *** Configuring MCA for opal checking for frameworks for opal... backtrace, carto, crs, hwloc, installdirs, maffinity, memchecker, memcpy, memory, paffinity, pstat, shmem, sysinfo, timer +++ Configuring MCA framework backtrace checking for no configure components in framework backtrace... checking for m4 configure components in framework backtrace... execinfo, printstack, darwin, none --- MCA component backtrace:execinfo (m4 configuration macro) checking for MCA component backtrace:execinfo compile mode... static checking for execinfo.h... (cached) yes checking if we need -lexecinfo for backtrace... no checking for backtrace... yes checking if MCA component backtrace:execinfo can compile... yes --- MCA component backtrace:printstack (m4 configuration macro) checking for MCA component backtrace:printstack compile mode... static checking ucontext.h usability... yes checking ucontext.h presence... yes checking for ucontext.h... yes checking for printstack... no checking if MCA component backtrace:printstack can compile... no --- MCA component backtrace:darwin (m4 configuration macro) checking for MCA component backtrace:darwin compile mode... static checking for vm_read_overwrite... no checking if MCA component backtrace:darwin can compile... no --- MCA component backtrace:none (m4 configuration macro) checking for MCA component backtrace:none compile mode... static checking if MCA component backtrace:none can compile... no +++ Configuring MCA framework carto checking for no configure components in framework carto... auto_detect, file checking for m4 configure components in framework carto... --- MCA component carto:auto_detect (no configuration) checking for MCA component carto:auto_detect compile mode... dso checking if MCA component carto:auto_detect can compile... yes --- MCA component carto:file (no configuration) checking for MCA component carto:file compile mode... dso checking if MCA component carto:file can compile... yes +++ Configuring MCA framework crs checking for no configure components in framework crs... none checking for m4 configure components in framework crs... blcr, self --- MCA component crs:none (no configuration) checking for MCA component crs:none compile mode... dso checking if MCA component crs:none can compile... yes --- MCA component crs:blcr (m4 configuration macro) checking for MCA component crs:blcr compile mode... dso checking --with-blcr value... simple ok (unspecified) checking --with-blcr-libdir value... simple ok (unspecified) checking if MCA component crs:blcr can compile... no --- MCA component crs:self (m4 configuration macro) checking for MCA component crs:self compile mode... dso checking if MCA component crs:self can compile... no +++ Configuring MCA framework installdirs checking for no configure components in framework installdirs... checking for m4 configure components in framework installdirs... env, config, windows --- MCA component installdirs:env (m4 configuration macro) checking for MCA component installdirs:env compile mode... static checking if MCA component installdirs:env can compile... yes --- MCA component installdirs:config (m4 configuration macro) checking for MCA component installdirs:config compile mode... static checking if MCA component installdirs:config can compile... yes --- MCA component installdirs:windows (m4 configuration macro) checking for MCA component installdirs:windows compile mode... static checking for working RegOpenKeyEx... no checking if MCA component installdirs:windows can compile... no +++ Configuring MCA framework maffinity checking for no configure components in framework maffinity... first_use checking for m4 configure components in framework maffinity... hwloc --- MCA component maffinity:first_use (no configuration) checking for MCA component maffinity:first_use compile mode... dso checking if MCA component maffinity:first_use can compile... yes --- MCA component maffinity:hwloc (m4 configuration macro) checking for MCA component maffinity:hwloc compile mode... dso checking if hwloc is enabled... yes checking if MCA component maffinity:hwloc can compile... yes +++ Pre-configuring the framework memchecker checking if --enable-memchecker was specified... no (adding "memchecker" to --enable-mca-no-build list) +++ Configuring MCA framework memchecker checking for no configure components in framework memchecker... checking for m4 configure components in framework memchecker... valgrind --- MCA component memchecker:valgrind (m4 configuration macro) checking for MCA component memchecker:valgrind compile mode... static checking --with-valgrind value... simple ok (unspecified) checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking if MCA component memchecker:valgrind can compile... no +++ Configuring MCA framework memcpy checking for no configure components in framework memcpy... checking for m4 configure components in framework memcpy... +++ Configuring MCA framework memory checking for no configure components in framework memory... checking for m4 configure components in framework memory... linux, malloc_solaris --- MCA component memory:linux (m4 configuration macro) checking for MCA component memory:linux compile mode... static checking operating system... x86_64-unknown-linux-gnu -- supported checking for malloc.h... (cached) yes checking whether __malloc_initialize_hook is declared... yes checking whether sbrk is declared... yes checking syscall.h usability... yes checking syscall.h presence... yes checking for syscall.h... yes checking for syscall... no checking for __munmap... no checking for __mmap... no checking for dlsym in -ldl... yes checking for dlsym... yes checking linux/ummunotify.h usability... no checking linux/ummunotify.h presence... no checking for linux/ummunotify.h... no checking for stropts.h... (cached) yes checking if MCA component memory:linux can compile... yes --- MCA component memory:malloc_solaris (m4 configuration macro) checking for MCA component memory:malloc_solaris compile mode... static checking for Solaris... no checking if MCA component memory:malloc_solaris can compile... no +++ Configuring MCA framework paffinity checking for no configure components in framework paffinity... checking for m4 configure components in framework paffinity... hwloc, test --- MCA component paffinity:hwloc (m4 configuration macro) checking for MCA component paffinity:hwloc compile mode... dso checking if hwloc is enabled... yes checking if MCA component paffinity:hwloc can compile... yes --- MCA component paffinity:test (m4 configuration macro) checking for MCA component paffinity:test compile mode... dso checking if this is an --enable-debug build... no (component disabled) checking if MCA component paffinity:test can compile... no +++ Configuring MCA framework pstat checking for no configure components in framework pstat... checking for m4 configure components in framework pstat... linux, darwin --- MCA component pstat:linux (m4 configuration macro) checking for MCA component pstat:linux compile mode... dso checking whether HZ is declared... yes checking if MCA component pstat:linux can compile... yes --- MCA component pstat:darwin (m4 configuration macro) checking for MCA component pstat:darwin compile mode... dso checking for mach/mach_host.h... (cached) no checking if MCA component pstat:darwin can compile... no +++ Configuring MCA framework shmem checking for no configure components in framework shmem... checking for m4 configure components in framework shmem... mmap, posix, sysv, windows --- MCA component shmem:mmap (m4 configuration macro) checking for MCA component shmem:mmap compile mode... dso checking if want mmap shared memory support... yes checking for library containing mmap... none required checking if MCA component shmem:mmap can compile... yes --- MCA component shmem:posix (m4 configuration macro) checking for MCA component shmem:posix compile mode... dso checking if want POSIX shared memory support... yes checking for library containing shm_open... none required checking if MCA component shmem:posix can compile... yes --- MCA component shmem:sysv (m4 configuration macro) checking for MCA component shmem:sysv compile mode... dso checking if want SYSV shared memory support... yes checking for shmget... yes checking if MCA component shmem:sysv can compile... yes --- MCA component shmem:windows (m4 configuration macro) checking for MCA component shmem:windows compile mode... dso checking if want Windows shared memory support... yes checking for CreateFileMapping... no checking if MCA component shmem:windows can compile... no +++ Configuring MCA framework sysinfo checking for no configure components in framework sysinfo... checking for m4 configure components in framework sysinfo... linux, solaris, darwin --- MCA component sysinfo:linux (m4 configuration macro) checking for MCA component sysinfo:linux compile mode... dso checking if we are on Linux... yes checking if MCA component sysinfo:linux can compile... yes --- MCA component sysinfo:solaris (m4 configuration macro) checking for MCA component sysinfo:solaris compile mode... dso configure: *** Open MPI does not support solaris sysinfo on this platform checking if MCA component sysinfo:solaris can compile... no --- MCA component sysinfo:darwin (m4 configuration macro) checking for MCA component sysinfo:darwin compile mode... dso checking for mach/mach_host.h... (cached) no checking if MCA component sysinfo:darwin can compile... no +++ Configuring MCA framework timer checking for no configure components in framework timer... checking for m4 configure components in framework timer... altix, catamount, aix, darwin, solaris, windows, linux --- MCA component timer:altix (m4 configuration macro) checking for MCA component timer:altix compile mode... static checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking if MCA component timer:altix can compile... no --- MCA component timer:catamount (m4 configuration macro) checking for MCA component timer:catamount compile mode... static checking catamount/dclock.h usability... no checking catamount/dclock.h presence... no checking for catamount/dclock.h... no checking if MCA component timer:catamount can compile... no --- MCA component timer:aix (m4 configuration macro) checking for MCA component timer:aix compile mode... static checking for time_base_to_time... no checking if MCA component timer:aix can compile... no --- MCA component timer:darwin (m4 configuration macro) checking for MCA component timer:darwin compile mode... static checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for mach_absolute_time... no checking if MCA component timer:darwin can compile... no --- MCA component timer:solaris (m4 configuration macro) checking for MCA component timer:solaris compile mode... static checking for gethrtime... no checking if MCA component timer:solaris can compile... no --- MCA component timer:windows (m4 configuration macro) checking for MCA component timer:windows compile mode... static checking if MCA component timer:windows can compile... no --- MCA component timer:linux (m4 configuration macro) checking for MCA component timer:linux compile mode... static checking if MCA component timer:linux can compile... yes *** Configuring MCA for orte checking for frameworks for orte... errmgr, ess, filem, grpcomm, iof, notifier, odls, oob, plm, ras, rmaps, rml, routed, snapc +++ Configuring MCA framework errmgr checking for no configure components in framework errmgr... default checking for m4 configure components in framework errmgr... --- MCA component errmgr:default (no configuration) checking for MCA component errmgr:default compile mode... dso checking if MCA component errmgr:default can compile... yes +++ Configuring MCA framework ess checking for no configure components in framework ess... checking for m4 configure components in framework ess... portals_utcp, cnos, alps, env, hnp, lsf, pmi, singleton, slave, slurm, slurmd, tm, tool --- MCA component ess:portals_utcp (m4 configuration macro) checking for MCA component ess:portals_utcp compile mode... dso checking --with-portals value... simple ok (unspecified) checking for PtlGetRank... no checking if MCA component ess:portals_utcp can compile... no --- MCA component ess:cnos (m4 configuration macro) checking for MCA component ess:cnos compile mode... dso checking for cnos_get_rank... no checking if MCA component ess:cnos can compile... no --- MCA component ess:alps (m4 configuration macro) checking for MCA component ess:alps compile mode... dso checking for catamount/cnos_mpi_os.h... no checking for cnos_mpi_os.h... no checking if MCA component ess:alps can compile... no --- MCA component ess:env (m4 configuration macro) checking for MCA component ess:env compile mode... dso checking if MCA component ess:env can compile... yes --- MCA component ess:hnp (m4 configuration macro) checking for MCA component ess:hnp compile mode... dso checking if MCA component ess:hnp can compile... yes --- MCA component ess:lsf (m4 configuration macro) checking for MCA component ess:lsf compile mode... dso checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component ess:lsf can compile... no --- MCA component ess:pmi (m4 configuration macro) checking for MCA component ess:pmi compile mode... dso checking if user requested PMI support... no checking if MCA component ess:pmi can compile... no --- MCA component ess:singleton (m4 configuration macro) checking for MCA component ess:singleton compile mode... dso checking if MCA component ess:singleton can compile... yes --- MCA component ess:slave (m4 configuration macro) checking for MCA component ess:slave compile mode... dso checking if MCA component ess:slave can compile... yes --- MCA component ess:slurm (m4 configuration macro) checking for MCA component ess:slurm compile mode... dso checking for fork... (cached) no checking if MCA component ess:slurm can compile... no --- MCA component ess:slurmd (m4 configuration macro) checking for MCA component ess:slurmd compile mode... dso checking for fork... (cached) no checking if MCA component ess:slurmd can compile... no --- MCA component ess:tm (m4 configuration macro) checking for MCA component ess:tm compile mode... dso checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ess:tm can compile... no --- MCA component ess:tool (m4 configuration macro) checking for MCA component ess:tool compile mode... dso checking if MCA component ess:tool can compile... yes +++ Configuring MCA framework filem checking for no configure components in framework filem... rsh checking for m4 configure components in framework filem... --- MCA component filem:rsh (no configuration) checking for MCA component filem:rsh compile mode... dso checking if MCA component filem:rsh can compile... yes +++ Configuring MCA framework grpcomm checking for no configure components in framework grpcomm... checking for m4 configure components in framework grpcomm... cnos, bad, basic, hier, pmi --- MCA component grpcomm:cnos (m4 configuration macro) checking for MCA component grpcomm:cnos compile mode... dso checking for cnos_barrier... no checking if MCA component grpcomm:cnos can compile... no --- MCA component grpcomm:bad (m4 configuration macro) checking for MCA component grpcomm:bad compile mode... dso checking if MCA component grpcomm:bad can compile... yes --- MCA component grpcomm:basic (m4 configuration macro) checking for MCA component grpcomm:basic compile mode... dso checking if MCA component grpcomm:basic can compile... yes --- MCA component grpcomm:hier (m4 configuration macro) checking for MCA component grpcomm:hier compile mode... dso checking if MCA component grpcomm:hier can compile... yes --- MCA component grpcomm:pmi (m4 configuration macro) checking for MCA component grpcomm:pmi compile mode... dso checking if user requested PMI support... no checking if MCA component grpcomm:pmi can compile... no +++ Configuring MCA framework iof checking for no configure components in framework iof... hnp, orted, tool checking for m4 configure components in framework iof... --- MCA component iof:hnp (no configuration) checking for MCA component iof:hnp compile mode... dso checking if MCA component iof:hnp can compile... yes --- MCA component iof:orted (no configuration) checking for MCA component iof:orted compile mode... dso checking if MCA component iof:orted can compile... yes --- MCA component iof:tool (no configuration) checking for MCA component iof:tool compile mode... dso checking if MCA component iof:tool can compile... yes +++ Configuring MCA framework notifier checking for no configure components in framework notifier... checking for m4 configure components in framework notifier... command, ftb, smtp, syslog --- MCA component notifier:command (m4 configuration macro) checking for MCA component notifier:command compile mode... dso checking for fork... (cached) no checking if MCA component notifier:command can compile... no --- MCA component notifier:ftb (m4 configuration macro) checking for MCA component notifier:ftb compile mode... dso checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking if MCA component notifier:ftb can compile... no --- MCA component notifier:smtp (m4 configuration macro) checking for MCA component notifier:smtp compile mode... dso checking --with-esmtp value... simple ok (unspecified) checking --with-esmtp-libdir value... simple ok (unspecified) checking libesmtp.h usability... no checking libesmtp.h presence... no checking for libesmtp.h... no checking if MCA component notifier:smtp can compile... no --- MCA component notifier:syslog (m4 configuration macro) checking for MCA component notifier:syslog compile mode... dso checking if MCA component notifier:syslog can compile... yes +++ Configuring MCA framework odls checking for no configure components in framework odls... checking for m4 configure components in framework odls... default, process --- MCA component odls:default (m4 configuration macro) checking for MCA component odls:default compile mode... dso checking for fork... (cached) no checking if MCA component odls:default can compile... no --- MCA component odls:process (m4 configuration macro) checking for MCA component odls:process compile mode... dso checking for CreateProcess... no checking if MCA component odls:process can compile... no +++ Configuring MCA framework oob checking for no configure components in framework oob... checking for m4 configure components in framework oob... tcp --- MCA component oob:tcp (m4 configuration macro) checking for MCA component oob:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component oob:tcp can compile... yes +++ Configuring MCA framework plm checking for no configure components in framework plm... checking for m4 configure components in framework plm... alps, ccp, lsf, process, rsh, slurm, tm --- MCA component plm:alps (m4 configuration macro) checking for MCA component plm:alps compile mode... dso checking if MCA component plm:alps can compile... no --- MCA component plm:ccp (m4 configuration macro) checking for MCA component plm:ccp compile mode... dso checking if MCA component plm:ccp can compile... no --- MCA component plm:lsf (m4 configuration macro) checking for MCA component plm:lsf compile mode... dso checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component plm:lsf can compile... no --- MCA component plm:process (m4 configuration macro) checking for MCA component plm:process compile mode... dso checking if MCA component plm:process can compile... no --- MCA component plm:rsh (m4 configuration macro) checking for MCA component plm:rsh compile mode... dso checking for fork... (cached) no checking if MCA component plm:rsh can compile... no --- MCA component plm:slurm (m4 configuration macro) checking for MCA component plm:slurm compile mode... dso checking for fork... (cached) no checking if MCA component plm:slurm can compile... no --- MCA component plm:tm (m4 configuration macro) checking for MCA component plm:tm compile mode... dso checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component plm:tm can compile... no +++ Configuring MCA framework ras checking for no configure components in framework ras... cm checking for m4 configure components in framework ras... alps, ccp, gridengine, loadleveler, lsf, slurm, tm --- MCA component ras:cm (no configuration) checking for MCA component ras:cm compile mode... dso checking if MCA component ras:cm can compile... yes --- MCA component ras:alps (m4 configuration macro) checking for MCA component ras:alps compile mode... dso checking if MCA component ras:alps can compile... no --- MCA component ras:ccp (m4 configuration macro) checking for MCA component ras:ccp compile mode... dso checking if MCA component ras:ccp can compile... no --- MCA component ras:gridengine (m4 configuration macro) checking for MCA component ras:gridengine compile mode... dso checking if user requested SGE build... not specified; checking environment checking for qrsh... no checking for SGE_ROOT environment variable... not found checking if MCA component ras:gridengine can compile... no --- MCA component ras:loadleveler (m4 configuration macro) checking for MCA component ras:loadleveler compile mode... dso checking if MCA component ras:loadleveler can compile... yes --- MCA component ras:lsf (m4 configuration macro) checking for MCA component ras:lsf compile mode... dso checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for LSF dir... compiler default checking for LSF library dir... linker default checking lsf/lsbatch.h usability... no checking lsf/lsbatch.h presence... no checking for lsf/lsbatch.h... no checking if MCA component ras:lsf can compile... no --- MCA component ras:slurm (m4 configuration macro) checking for MCA component ras:slurm compile mode... dso checking for fork... (cached) no checking if MCA component ras:slurm can compile... no --- MCA component ras:tm (m4 configuration macro) checking for MCA component ras:tm compile mode... dso checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ras:tm can compile... no +++ Configuring MCA framework rmaps checking for no configure components in framework rmaps... load_balance, rank_file, resilient, round_robin, seq, topo checking for m4 configure components in framework rmaps... --- MCA component rmaps:load_balance (no configuration) checking for MCA component rmaps:load_balance compile mode... dso checking if MCA component rmaps:load_balance can compile... yes --- MCA component rmaps:rank_file (no configuration) checking for MCA component rmaps:rank_file compile mode... dso checking if MCA component rmaps:rank_file can compile... yes --- MCA component rmaps:resilient (no configuration) checking for MCA component rmaps:resilient compile mode... dso checking if MCA component rmaps:resilient can compile... yes --- MCA component rmaps:round_robin (no configuration) checking for MCA component rmaps:round_robin compile mode... dso checking if MCA component rmaps:round_robin can compile... yes --- MCA component rmaps:seq (no configuration) checking for MCA component rmaps:seq compile mode... dso checking if MCA component rmaps:seq can compile... yes --- MCA component rmaps:topo (no configuration) checking for MCA component rmaps:topo compile mode... dso checking if MCA component rmaps:topo can compile... yes +++ Configuring MCA framework rml checking for no configure components in framework rml... oob checking for m4 configure components in framework rml... ftrm --- MCA component rml:oob (no configuration) checking for MCA component rml:oob compile mode... dso checking if MCA component rml:oob can compile... yes --- MCA component rml:ftrm (m4 configuration macro) checking for MCA component rml:ftrm compile mode... dso checking if MCA component rml:ftrm can compile... no +++ Configuring MCA framework routed checking for no configure components in framework routed... binomial, cm, direct, linear, radix, slave checking for m4 configure components in framework routed... --- MCA component routed:binomial (no configuration) checking for MCA component routed:binomial compile mode... dso checking if MCA component routed:binomial can compile... yes --- MCA component routed:cm (no configuration) checking for MCA component routed:cm compile mode... dso checking if MCA component routed:cm can compile... yes --- MCA component routed:direct (no configuration) checking for MCA component routed:direct compile mode... dso checking if MCA component routed:direct can compile... yes --- MCA component routed:linear (no configuration) checking for MCA component routed:linear compile mode... dso checking if MCA component routed:linear can compile... yes --- MCA component routed:radix (no configuration) checking for MCA component routed:radix compile mode... dso checking if MCA component routed:radix can compile... yes --- MCA component routed:slave (no configuration) checking for MCA component routed:slave compile mode... dso checking if MCA component routed:slave can compile... yes +++ Configuring MCA framework snapc checking for no configure components in framework snapc... checking for m4 configure components in framework snapc... full --- MCA component snapc:full (m4 configuration macro) checking for MCA component snapc:full compile mode... dso checking if MCA component snapc:full can compile... no *** Configuring MCA for ompi checking for frameworks for ompi... allocator, bml, btl, coll, common, crcp, dpm, io, mpool, mtl, op, osc, pml, pubsub, rcache, topo +++ Configuring MCA framework allocator checking for no configure components in framework allocator... basic, bucket checking for m4 configure components in framework allocator... --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... dso checking if MCA component allocator:basic can compile... yes --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... dso checking if MCA component allocator:bucket can compile... yes +++ Configuring MCA framework bml checking for no configure components in framework bml... r2 checking for m4 configure components in framework bml... --- MCA component bml:r2 (no configuration) checking for MCA component bml:r2 compile mode... dso checking if MCA component bml:r2 can compile... yes +++ Configuring MCA framework btl checking for no configure components in framework btl... self checking for m4 configure components in framework btl... elan, mx, ofud, openib, portals, sctp, sm, tcp, udapl --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... dso checking if MCA component btl:self can compile... yes --- MCA component btl:elan (m4 configuration macro) checking for MCA component btl:elan compile mode... dso checking --with-elan value... simple ok (unspecified) checking --with-elan-libdir value... simple ok (unspecified) checking elan/elan.h usability... no checking elan/elan.h presence... no checking for elan/elan.h... no checking if MCA component btl:elan can compile... no --- MCA component btl:mx (m4 configuration macro) checking for MCA component btl:mx compile mode... dso checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component btl:mx can compile... no --- MCA component btl:ofud (m4 configuration macro) checking for MCA component btl:ofud compile mode... dso checking --with-openib value... simple ok (unspecified) checking --with-openib-libdir value... simple ok (unspecified) checking if want to add padding to the openib control header... no checking for fcntl.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if ConnectX XRC support is enabled... no checking if dynamic SL is enabled... no checking if OpenFabrics RDMACM support is enabled... no checking if MCA component btl:ofud can compile... no --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... dso checking --with-openib value... simple ok (unspecified) checking --with-openib-libdir value... simple ok (unspecified) checking if want to add padding to the openib control header... no checking for fcntl.h... (cached) yes checking for sys/poll.h... (cached) yes checking infiniband/verbs.h usability... no checking infiniband/verbs.h presence... no checking for infiniband/verbs.h... no checking if ConnectX XRC support is enabled... no checking if dynamic SL is enabled... no checking if OpenFabrics RDMACM support is enabled... no checking for thread support (needed for rdmacm)... posix checking whether openib failover is enabled... no checking for malloc.h... (cached) yes checking for __malloc_hook... yes checking for __realloc_hook... yes checking for __free_hook... yes checking whether the openib BTL will use malloc hooks... yes checking if MCA component btl:openib can compile... no --- MCA component btl:portals (m4 configuration macro) checking for MCA component btl:portals compile mode... dso checking --with-portals value... simple ok (unspecified) checking for Portals configuration... utcp checking portals3.h usability... no checking portals3.h presence... no checking for portals3.h... no checking for catamount/cnos_mpi_os.h... (cached) no checking for cnos_mpi_os.h... (cached) no checking if MCA component btl:portals can compile... no --- MCA component btl:sctp (m4 configuration macro) checking for MCA component btl:sctp compile mode... dso checking --with-sctp value... simple ok (unspecified) checking --with-sctp-libdir value... simple ok (unspecified) checking for netinet/in.h... (cached) yes checking for netinet/sctp.h... no checking if MCA component btl:sctp can compile... no --- MCA component btl:sm (m4 configuration macro) checking for MCA component btl:sm compile mode... dso checking --with-knem value... simple ok (unspecified) checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no checking if MCA component btl:sm can compile... yes --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... dso checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes --- MCA component btl:udapl (m4 configuration macro) checking for MCA component btl:udapl compile mode... dso checking --with-udapl value... simple ok (unspecified) checking --with-udapl-libdir value... simple ok (unspecified) checking if MCA component btl:udapl can compile... no +++ Configuring MCA framework coll checking for no configure components in framework coll... basic, hierarch, inter, self, sm, sync, tuned checking for m4 configure components in framework coll... fca --- MCA component coll:basic (no configuration) checking for MCA component coll:basic compile mode... dso checking if MCA component coll:basic can compile... yes --- MCA component coll:hierarch (no configuration) checking for MCA component coll:hierarch compile mode... dso checking if MCA component coll:hierarch can compile... yes --- MCA component coll:inter (no configuration) checking for MCA component coll:inter compile mode... dso checking if MCA component coll:inter can compile... yes --- MCA component coll:self (no configuration) checking for MCA component coll:self compile mode... dso checking if MCA component coll:self can compile... yes --- MCA component coll:sm (no configuration) checking for MCA component coll:sm compile mode... dso checking if MCA component coll:sm can compile... yes --- MCA component coll:sync (no configuration) checking for MCA component coll:sync compile mode... dso checking if MCA component coll:sync can compile... yes --- MCA component coll:tuned (no configuration) checking for MCA component coll:tuned compile mode... dso checking if MCA component coll:tuned can compile... yes --- MCA component coll:fca (m4 configuration macro) checking for MCA component coll:fca compile mode... dso checking --with-fca value... simple ok (unspecified) checking if MCA component coll:fca can compile... no +++ Configuring MCA framework common checking for no configure components in framework common... sm checking for m4 configure components in framework common... mx, portals --- MCA component common:sm (no configuration) checking for MCA component common:sm compile mode... dso checking if MCA component common:sm can compile... yes --- MCA component common:mx (m4 configuration macro) checking for MCA component common:mx compile mode... dso checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component common:mx can compile... no --- MCA component common:portals (m4 configuration macro) checking for MCA component common:portals compile mode... dso checking --with-portals value... simple ok (unspecified) checking for Portals configuration... utcp checking for portals3.h... (cached) no checking if MCA component common:portals can compile... no +++ Configuring MCA framework crcp checking for no configure components in framework crcp... checking for m4 configure components in framework crcp... bkmrk --- MCA component crcp:bkmrk (m4 configuration macro) checking for MCA component crcp:bkmrk compile mode... dso checking if MCA component crcp:bkmrk can compile... no +++ Configuring MCA framework dpm checking for no configure components in framework dpm... orte checking for m4 configure components in framework dpm... --- MCA component dpm:orte (no configuration) checking for MCA component dpm:orte compile mode... dso checking if MCA component dpm:orte can compile... yes +++ Configuring MCA framework io checking for no configure components in framework io... checking for m4 configure components in framework io... romio --- MCA component io:romio (m4 configuration macro) checking for MCA component io:romio compile mode... dso checking if want ROMIO component... yes checking if MPI profiling is enabled... yes *** Configuring ROMIO distribution configure: OMPI configuring in ompi/mca/io/romio/romio configure: running /bin/bash './configure' CFLAGS="-DNDEBUG -fPIC -g -finline-functions -fno-strict-aliasing " CPPFLAGS=" -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband" FFLAGS=" -fPIC -g " LDFLAGS=" " --enable-shared --disable-static --prefix=/home/hills/seska/packages/petsc/linux-gnu-cxx-opt --with-mpi=open_mpi --disable-aio --cache-file=/dev/null --srcdir=. --disable-option-checking Configuring with args CFLAGS=-DNDEBUG -fPIC -g -finline-functions -fno-strict-aliasing CPPFLAGS= -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband FFLAGS= -fPIC -g LDFLAGS= --enable-shared --disable-static --prefix=/home/hills/seska/packages/petsc/linux-gnu-cxx-opt --with-mpi=open_mpi --disable-aio --cache-file=/dev/null --srcdir=. --disable-option-checking checking for Open MPI support files... in Open MPI source tree -- good checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make supports nested variables... yes checking for architecture... LINUX ROMIO home directory is /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio checking for ranlib... ranlib checking for style of include used by make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh accepts -g... yes checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to accept ISO C89... none needed checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... gcc3 checking how to run the C preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E checking for memalign... yes checking how to run the C preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... 8 checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... no checking for doctext... no checking for strdup... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... no checking for fsync... no checking for ftruncate... no checking for lseek64... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -fno-rtti -fno-exceptions... no checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to produce PIC... -fPIC -DPIC checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh PIC flag -fPIC -DPIC works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh static flag -static works... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -c -o file.o... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -c -o file.o... (cached) yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for : option to produce PIC... checking if : static flag works... no checking if : supports -c -o file.o... no checking if : supports -c -o file.o... (cached) no checking whether the : linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate setting CC to /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh setting F77 to : setting TEST_CC to mpicc setting TEST_F77 to mpif77 setting CFLAGS to -DNDEBUG -fPIC -g -finline-functions -fno-strict-aliasing -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating adio/Makefile config.status: creating adio/ad_bgl/Makefile config.status: creating adio/ad_bglockless/Makefile config.status: creating adio/ad_gridftp/Makefile config.status: creating adio/ad_lustre/Makefile config.status: creating adio/ad_nfs/Makefile config.status: creating adio/ad_ntfs/Makefile config.status: creating adio/ad_panfs/Makefile config.status: creating adio/ad_pfs/Makefile config.status: creating adio/ad_pvfs/Makefile config.status: creating adio/ad_pvfs2/Makefile config.status: creating adio/ad_sfs/Makefile config.status: creating adio/ad_testfs/Makefile config.status: creating adio/ad_ufs/Makefile config.status: creating adio/ad_xfs/Makefile config.status: creating adio/ad_zoidfs/Makefile config.status: creating adio/common/Makefile config.status: creating adio/include/Makefile config.status: creating doc/Makefile config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating include/Makefile config.status: creating mpi-io/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating test/runtests config.status: creating util/romioinstall config.status: creating mpi-io/glue/openmpi/Makefile config.status: creating util/Makefile config.status: creating adio/include/romioconf.h config.status: adio/include/romioconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: /bin/bash './configure' succeeded for ompi/mca/io/romio/romio ROMIO distribution configured successfully checking if MCA component io:romio can compile... yes +++ Configuring MCA framework mpool checking for no configure components in framework mpool... fake, rdma, sm checking for m4 configure components in framework mpool... --- MCA component mpool:fake (no configuration) checking for MCA component mpool:fake compile mode... dso checking if MCA component mpool:fake can compile... yes --- MCA component mpool:rdma (no configuration) checking for MCA component mpool:rdma compile mode... dso checking if MCA component mpool:rdma can compile... yes --- MCA component mpool:sm (no configuration) checking for MCA component mpool:sm compile mode... dso checking if MCA component mpool:sm can compile... yes +++ Configuring MCA framework mtl checking for no configure components in framework mtl... checking for m4 configure components in framework mtl... mx, mxm, portals, psm --- MCA component mtl:mx (m4 configuration macro) checking for MCA component mtl:mx compile mode... dso checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component mtl:mx can compile... no --- MCA component mtl:mxm (m4 configuration macro) checking for MCA component mtl:mxm compile mode... dso checking --with-mxm value... simple ok (unspecified) checking --with-mxm-libdir value... simple ok (unspecified) checking mxm/api/mxm_api.h usability... no checking mxm/api/mxm_api.h presence... no checking for mxm/api/mxm_api.h... no checking if MCA component mtl:mxm can compile... no --- MCA component mtl:portals (m4 configuration macro) checking for MCA component mtl:portals compile mode... dso checking --with-portals value... simple ok (unspecified) checking for Portals configuration... utcp checking for portals3.h... (cached) no checking if MCA component mtl:portals can compile... no --- MCA component mtl:psm (m4 configuration macro) checking for MCA component mtl:psm compile mode... dso checking --with-psm value... simple ok (unspecified) checking --with-psm-libdir value... simple ok (unspecified) checking psm.h usability... no checking psm.h presence... no checking for psm.h... no checking if MCA component mtl:psm can compile... no +++ Configuring MCA framework op checking for no configure components in framework op... checking for m4 configure components in framework op... +++ Configuring MCA framework osc checking for no configure components in framework osc... pt2pt, rdma checking for m4 configure components in framework osc... --- MCA component osc:pt2pt (no configuration) checking for MCA component osc:pt2pt compile mode... dso checking if MCA component osc:pt2pt can compile... yes --- MCA component osc:rdma (no configuration) checking for MCA component osc:rdma compile mode... dso checking if MCA component osc:rdma can compile... yes +++ Configuring MCA framework pml checking for no configure components in framework pml... bfo, cm, csum, ob1 checking for m4 configure components in framework pml... crcpw, v --- MCA component pml:bfo (no configuration) checking for MCA component pml:bfo compile mode... dso checking if MCA component pml:bfo can compile... yes --- MCA component pml:cm (no configuration) checking for MCA component pml:cm compile mode... dso checking if MCA component pml:cm can compile... yes --- MCA component pml:csum (no configuration) checking for MCA component pml:csum compile mode... dso checking if MCA component pml:csum can compile... yes --- MCA component pml:ob1 (no configuration) checking for MCA component pml:ob1 compile mode... dso checking if MCA component pml:ob1 can compile... yes --- MCA component pml:crcpw (m4 configuration macro) checking for MCA component pml:crcpw compile mode... dso checking if MCA component pml:crcpw can compile... no --- MCA component pml:v (m4 configuration macro) checking for MCA component pml:v compile mode... dso +++ Configuring MCA framework vprotocol checking for no configure components in framework vprotocol... pessimist checking for m4 configure components in framework vprotocol... --- MCA component vprotocol:pessimist (no configuration) checking for MCA component vprotocol:pessimist compile mode... dso checking if MCA component vprotocol:pessimist can compile... yes checking if MCA component pml:v can compile... yes +++ Configuring MCA framework pubsub checking for no configure components in framework pubsub... orte checking for m4 configure components in framework pubsub... pmi --- MCA component pubsub:orte (no configuration) checking for MCA component pubsub:orte compile mode... dso checking if MCA component pubsub:orte can compile... yes --- MCA component pubsub:pmi (m4 configuration macro) checking for MCA component pubsub:pmi compile mode... dso checking if user requested PMI support... no checking if MCA component pubsub:pmi can compile... no +++ Configuring MCA framework rcache checking for no configure components in framework rcache... vma checking for m4 configure components in framework rcache... --- MCA component rcache:vma (no configuration) checking for MCA component rcache:vma compile mode... dso checking if MCA component rcache:vma can compile... yes +++ Configuring MCA framework topo checking for no configure components in framework topo... unity checking for m4 configure components in framework topo... --- MCA component topo:unity (no configuration) checking for MCA component topo:unity compile mode... dso checking if MCA component topo:unity can compile... yes ============================================================================ == Extended MPI interfaces setup ============================================================================ checking which extension components should be enabled... checking for projects containing EXT frameworks... ompi *** Configuring EXT for ompi checking for frameworks for ompi... mpiext +++ Configuring EXT framework mpiext checking for no configure components in framework mpiext... checking for m4 configure components in framework mpiext... affinity, example --- EXT component mpiext:affinity (m4 configuration macro) checking if EXT component mpiext:affinity can compile... no --- EXT component mpiext:example (m4 configuration macro) checking if EXT component mpiext:example can compile... no ============================================================================ == Contributed software setup ============================================================================ *** Configuring contributed software packages checking which contributed software packages should be disabled... --- libompitrace (m4 configuration macro) checking if contributed component libompitrace can compile... yes --- vt (m4 configuration macro) configure: disabled via command line switch ============================================================================ == Symbol visibility feature ============================================================================ checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) ============================================================================ == Final top-level OMPI configuration ============================================================================ *** Libevent 3rd party event handler checking for ANSI C header files... (cached) yes checking for fcntl.h... (cached) yes checking for stdarg.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for poll.h... (cached) yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking for unistd.h... (cached) yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking for sys/time.h... (cached) yes checking for sys/queue.h... (cached) yes checking sys/event.h usability... no checking sys/event.h presence... no checking for sys/event.h... no checking for sys/ioctl.h... (cached) yes checking sys/devpoll.h usability... no checking sys/devpoll.h presence... no checking for sys/devpoll.h... no checking for TAILQ_FOREACH in sys/queue.h... yes checking for timeradd in sys/time.h... yes checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes checking for vasprintf... (cached) yes checking for fcntl... yes checking for strtoll... yes checking for F_SETFD in fcntl.h... yes checking for select... no checking for poll... yes checking for epoll_ctl... yes checking for working epoll library interface... yes checking for port_create... no checking for pid_t... yes checking for size_t... yes *** Libtool configuration checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -fno-rtti -fno-exceptions... no checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to produce PIC... -fPIC -DPIC checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh PIC flag -fPIC -DPIC works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh static flag -static works... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -c -o file.o... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -c -o file.o... (cached) yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh -E checking for ld used by /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh option to produce PIC... -fPIC -DPIC checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh PIC flag -fPIC -DPIC works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh static flag -static works... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports -c -o file.o... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh supports -c -o file.o... (cached) yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh option to produce PIC... -fPIC checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh PIC flag -fPIC works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh static flag -static works... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh supports -c -o file.o... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh supports -c -o file.o... (cached) yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh option to produce PIC... -fPIC checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh PIC flag -fPIC works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh static flag -static works... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh supports -c -o file.o... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh supports -c -o file.o... (cached) yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate *** GNU libltdl setup checking location of libltdl... internal copy configure: OMPI configuring in opal/libltdl configure: running /bin/bash './configure' '--prefix=/home/hills/seska/packages/petsc/linux-gnu-cxx-opt' '--with-rsh=ssh' 'CC=/home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh' 'CFLAGS= -fPIC -g ' '--enable-shared' 'CXX=/home/hills/seska/packages/tau/x86_64/bin/tau_cxx.sh' 'CXXFLAGS= -g -fPIC ' 'F77=/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh' 'FFLAGS= -fPIC -g ' 'FC=/home/hills/seska/packages/tau/x86_64/bin/tau_f90.sh' 'FCFLAGS= -fPIC -g ' '--disable-vt' --enable-ltdl-convenience --disable-ltdl-install --enable-shared --disable-static --cache-file=/dev/null --srcdir=. --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for style of include used by make... GNU checking for gcc... /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh accepts -g... yes checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to accept ISO C89... none needed checking dependency style of /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -fno-rtti -fno-exceptions... no checking for /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh option to produce PIC... -fPIC -DPIC checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh PIC flag -fPIC -DPIC works... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh static flag -static works... no checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -c -o file.o... yes checking if /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh supports -c -o file.o... (cached) yes checking whether the /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking which extension is used for runtime loadable modules... .so checking which variable specifies run-time module search path... LD_LIBRARY_PATH checking for the default library search path... /lib /usr/lib /usr/local/lib /lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu/mesa-egl /usr/lib/x86_64-linux-gnu/mesa checking for library containing dlopen... none required checking for dlerror... yes checking for shl_load... (cached) no checking for shl_load in -ldld... (cached) no checking for dld_link in -ldld... no checking for _ prefix in compiled symbols... no checking whether deplibs are loaded by dlopen... yes checking for argz.h... yes checking for error_t... yes checking for argz_add... yes checking for argz_append... yes checking for argz_count... yes checking for argz_create_sep... yes checking for argz_insert... yes checking for argz_next... yes checking for argz_stringify... yes checking if argz actually works... yes checking whether libtool supports -dlopen/-dlpreopen... yes checking for unistd.h... (cached) yes checking for dl.h... no checking for sys/dl.h... no checking for dld.h... no checking for mach-o/dyld.h... no checking for dirent.h... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes checking for strlcat... no checking for strlcpy... no configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: /bin/bash './configure' succeeded for opal/libltdl checking for libtool-supplied linker flags... -Wl,--export-dynamic -lnsl *** Compiler flags checking which of CFLAGS are ok for debugger modules... -DNDEBUG -fPIC -fno-strict-aliasing checking for debugger extra CFLAGS... -g *** Wrapper compiler final setup checking for perl... /usr/bin/perl checking for OPAL CPPFLAGS... checking for OPAL CFLAGS... checking for OPAL CXXFLAGS... checking for OPAL LDFLAGS... checking for OPAL LIBS... -ldl -lm -Wl,--export-dynamic -lnsl checking for OPAL extra include dirs... checking for ORTE CPPFLAGS... checking for ORTE CXXFLAGS... checking for ORTE CFLAGS... checking for ORTE LDFLAGS... checking for ORTE LIBS... -ldl -lm -Wl,--export-dynamic -lnsl checking for ORTE extra include dirs... checking for OMPI CPPFLAGS... checking for OMPI CFLAGS... checking for OMPI CXXFLAGS... checking for OMPI FFLAGS... checking for OMPI FCFLAGS... checking for OMPI LDFLAGS... checking for OMPI LIBS... -ldl -lm -Wl,--export-dynamic -lnsl checking for OMPI extra include dirs... *** Final output configure: creating ./config.status config.status: creating ompi/include/ompi/version.h config.status: creating orte/include/orte/version.h config.status: creating opal/include/opal/version.h config.status: creating opal/mca/hwloc/hwloc132/hwloc/Makefile config.status: creating opal/mca/hwloc/hwloc132/hwloc/include/Makefile config.status: creating opal/mca/hwloc/hwloc132/hwloc/src/Makefile config.status: creating opal/mca/installdirs/config/install_dirs.h config.status: creating opal/mca/backtrace/Makefile config.status: creating opal/mca/backtrace/darwin/Makefile config.status: creating opal/mca/backtrace/execinfo/Makefile config.status: creating opal/mca/backtrace/none/Makefile config.status: creating opal/mca/backtrace/printstack/Makefile config.status: creating opal/mca/carto/Makefile config.status: creating opal/mca/carto/auto_detect/Makefile config.status: creating opal/mca/carto/file/Makefile config.status: creating opal/mca/crs/Makefile config.status: creating opal/mca/crs/blcr/Makefile config.status: creating opal/mca/crs/none/Makefile config.status: creating opal/mca/crs/self/Makefile config.status: creating opal/mca/hwloc/Makefile config.status: creating opal/mca/hwloc/external/Makefile config.status: creating opal/mca/hwloc/hwloc132/Makefile config.status: creating opal/mca/installdirs/Makefile config.status: creating opal/mca/installdirs/config/Makefile config.status: creating opal/mca/installdirs/env/Makefile config.status: creating opal/mca/installdirs/windows/Makefile config.status: creating opal/mca/maffinity/Makefile config.status: creating opal/mca/maffinity/first_use/Makefile config.status: creating opal/mca/maffinity/hwloc/Makefile config.status: creating opal/mca/memchecker/Makefile config.status: creating opal/mca/memchecker/valgrind/Makefile config.status: creating opal/mca/memcpy/Makefile config.status: creating opal/mca/memory/Makefile config.status: creating opal/mca/memory/linux/Makefile config.status: creating opal/mca/memory/malloc_solaris/Makefile config.status: creating opal/mca/paffinity/Makefile config.status: creating opal/mca/paffinity/hwloc/Makefile config.status: creating opal/mca/paffinity/test/Makefile config.status: creating opal/mca/pstat/Makefile config.status: creating opal/mca/pstat/darwin/Makefile config.status: creating opal/mca/pstat/linux/Makefile config.status: creating opal/mca/shmem/Makefile config.status: creating opal/mca/shmem/mmap/Makefile config.status: creating opal/mca/shmem/posix/Makefile config.status: creating opal/mca/shmem/sysv/Makefile config.status: creating opal/mca/shmem/windows/Makefile config.status: creating opal/mca/sysinfo/Makefile config.status: creating opal/mca/sysinfo/darwin/Makefile config.status: creating opal/mca/sysinfo/linux/Makefile config.status: creating opal/mca/sysinfo/solaris/Makefile config.status: creating opal/mca/timer/Makefile config.status: creating opal/mca/timer/aix/Makefile config.status: creating opal/mca/timer/altix/Makefile config.status: creating opal/mca/timer/catamount/Makefile config.status: creating opal/mca/timer/darwin/Makefile config.status: creating opal/mca/timer/linux/Makefile config.status: creating opal/mca/timer/solaris/Makefile config.status: creating opal/mca/timer/windows/Makefile config.status: creating orte/mca/errmgr/Makefile config.status: creating orte/mca/errmgr/default/Makefile config.status: creating orte/mca/ess/Makefile config.status: creating orte/mca/ess/alps/Makefile config.status: creating orte/mca/ess/cnos/Makefile config.status: creating orte/mca/ess/env/Makefile config.status: creating orte/mca/ess/hnp/Makefile config.status: creating orte/mca/ess/lsf/Makefile config.status: creating orte/mca/ess/pmi/Makefile config.status: creating orte/mca/ess/portals_utcp/Makefile config.status: creating orte/mca/ess/singleton/Makefile config.status: creating orte/mca/ess/slave/Makefile config.status: creating orte/mca/ess/slurm/Makefile config.status: creating orte/mca/ess/slurmd/Makefile config.status: creating orte/mca/ess/tm/Makefile config.status: creating orte/mca/ess/tool/Makefile config.status: creating orte/mca/filem/Makefile config.status: creating orte/mca/filem/rsh/Makefile config.status: creating orte/mca/grpcomm/Makefile config.status: creating orte/mca/grpcomm/bad/Makefile config.status: creating orte/mca/grpcomm/basic/Makefile config.status: creating orte/mca/grpcomm/cnos/Makefile config.status: creating orte/mca/grpcomm/hier/Makefile config.status: creating orte/mca/grpcomm/pmi/Makefile config.status: creating orte/mca/iof/Makefile config.status: creating orte/mca/iof/hnp/Makefile config.status: creating orte/mca/iof/orted/Makefile config.status: creating orte/mca/iof/tool/Makefile config.status: creating orte/mca/notifier/Makefile config.status: creating orte/mca/notifier/command/Makefile config.status: creating orte/mca/notifier/ftb/Makefile config.status: creating orte/mca/notifier/smtp/Makefile config.status: creating orte/mca/notifier/syslog/Makefile config.status: creating orte/mca/odls/Makefile config.status: creating orte/mca/odls/default/Makefile config.status: creating orte/mca/odls/process/Makefile config.status: creating orte/mca/oob/Makefile config.status: creating orte/mca/oob/tcp/Makefile config.status: creating orte/mca/plm/Makefile config.status: creating orte/mca/plm/alps/Makefile config.status: creating orte/mca/plm/ccp/Makefile config.status: creating orte/mca/plm/lsf/Makefile config.status: creating orte/mca/plm/process/Makefile config.status: creating orte/mca/plm/rsh/Makefile config.status: creating orte/mca/plm/slurm/Makefile config.status: creating orte/mca/plm/tm/Makefile config.status: creating orte/mca/ras/Makefile config.status: creating orte/mca/ras/alps/Makefile config.status: creating orte/mca/ras/ccp/Makefile config.status: creating orte/mca/ras/cm/Makefile config.status: creating orte/mca/ras/gridengine/Makefile config.status: creating orte/mca/ras/loadleveler/Makefile config.status: creating orte/mca/ras/lsf/Makefile config.status: creating orte/mca/ras/slurm/Makefile config.status: creating orte/mca/ras/tm/Makefile config.status: creating orte/mca/rmaps/Makefile config.status: creating orte/mca/rmaps/load_balance/Makefile config.status: creating orte/mca/rmaps/rank_file/Makefile config.status: creating orte/mca/rmaps/resilient/Makefile config.status: creating orte/mca/rmaps/round_robin/Makefile config.status: creating orte/mca/rmaps/seq/Makefile config.status: creating orte/mca/rmaps/topo/Makefile config.status: creating orte/mca/rml/Makefile config.status: creating orte/mca/rml/ftrm/Makefile config.status: creating orte/mca/rml/oob/Makefile config.status: creating orte/mca/routed/Makefile config.status: creating orte/mca/routed/binomial/Makefile config.status: creating orte/mca/routed/cm/Makefile config.status: creating orte/mca/routed/direct/Makefile config.status: creating orte/mca/routed/linear/Makefile config.status: creating orte/mca/routed/radix/Makefile config.status: creating orte/mca/routed/slave/Makefile config.status: creating orte/mca/snapc/Makefile config.status: creating orte/mca/snapc/full/Makefile config.status: creating ompi/mca/allocator/Makefile config.status: creating ompi/mca/allocator/basic/Makefile config.status: creating ompi/mca/allocator/bucket/Makefile config.status: creating ompi/mca/bml/Makefile config.status: creating ompi/mca/bml/r2/Makefile config.status: creating ompi/mca/btl/Makefile config.status: creating ompi/mca/btl/elan/Makefile config.status: creating ompi/mca/btl/mx/Makefile config.status: creating ompi/mca/btl/ofud/Makefile config.status: creating ompi/mca/btl/openib/Makefile config.status: creating ompi/mca/btl/portals/Makefile config.status: creating ompi/mca/btl/sctp/Makefile config.status: creating ompi/mca/btl/self/Makefile config.status: creating ompi/mca/btl/sm/Makefile config.status: creating ompi/mca/btl/tcp/Makefile config.status: creating ompi/mca/btl/udapl/Makefile config.status: creating ompi/mca/coll/Makefile config.status: creating ompi/mca/coll/basic/Makefile config.status: creating ompi/mca/coll/fca/Makefile config.status: creating ompi/mca/coll/hierarch/Makefile config.status: creating ompi/mca/coll/inter/Makefile config.status: creating ompi/mca/coll/self/Makefile config.status: creating ompi/mca/coll/sm/Makefile config.status: creating ompi/mca/coll/sync/Makefile config.status: creating ompi/mca/coll/tuned/Makefile config.status: creating ompi/mca/common/Makefile config.status: creating ompi/mca/common/mx/Makefile config.status: creating ompi/mca/common/portals/Makefile config.status: creating ompi/mca/common/sm/Makefile config.status: creating ompi/mca/crcp/Makefile config.status: creating ompi/mca/crcp/bkmrk/Makefile config.status: creating ompi/mca/dpm/Makefile config.status: creating ompi/mca/dpm/orte/Makefile config.status: creating ompi/mca/io/Makefile config.status: creating ompi/mca/io/romio/Makefile config.status: creating ompi/mca/mpool/Makefile config.status: creating ompi/mca/mpool/fake/Makefile config.status: creating ompi/mca/mpool/rdma/Makefile config.status: creating ompi/mca/mpool/sm/Makefile config.status: creating ompi/mca/mtl/Makefile config.status: creating ompi/mca/mtl/mx/Makefile config.status: creating ompi/mca/mtl/mxm/Makefile config.status: creating ompi/mca/mtl/portals/Makefile config.status: creating ompi/mca/mtl/psm/Makefile config.status: creating ompi/mca/op/Makefile config.status: creating ompi/mca/osc/Makefile config.status: creating ompi/mca/osc/pt2pt/Makefile config.status: creating ompi/mca/osc/rdma/Makefile config.status: creating ompi/mca/pml/Makefile config.status: creating ompi/mca/pml/bfo/Makefile config.status: creating ompi/mca/pml/cm/Makefile config.status: creating ompi/mca/pml/crcpw/Makefile config.status: creating ompi/mca/pml/csum/Makefile config.status: creating ompi/mca/pml/ob1/Makefile config.status: creating ompi/mca/pml/v/mca/vprotocol/Makefile config.status: creating ompi/mca/pml/v/mca/vprotocol/pessimist/Makefile config.status: creating ompi/mca/pml/v/Makefile config.status: creating ompi/mca/pubsub/Makefile config.status: creating ompi/mca/pubsub/orte/Makefile config.status: creating ompi/mca/pubsub/pmi/Makefile config.status: creating ompi/mca/rcache/Makefile config.status: creating ompi/mca/rcache/vma/Makefile config.status: creating ompi/mca/topo/Makefile config.status: creating ompi/mca/topo/unity/Makefile config.status: creating ompi/contrib/libompitrace/Makefile config.status: creating ompi/mpiext/Makefile config.status: creating ompi/mpiext/affinity/Makefile config.status: creating ompi/mpiext/example/Makefile config.status: creating Makefile config.status: creating config/Makefile config.status: creating contrib/Makefile config.status: creating test/Makefile config.status: creating test/event/Makefile config.status: creating test/asm/Makefile config.status: creating test/datatype/Makefile config.status: creating test/class/Makefile config.status: creating test/support/Makefile config.status: creating test/threads/Makefile config.status: creating test/util/Makefile config.status: creating opal/Makefile config.status: creating opal/etc/Makefile config.status: creating opal/include/Makefile config.status: creating opal/asm/Makefile config.status: creating opal/datatype/Makefile config.status: creating opal/event/Makefile config.status: creating opal/event/compat/Makefile config.status: creating opal/event/compat/sys/Makefile config.status: creating opal/util/Makefile config.status: creating opal/util/keyval/Makefile config.status: creating opal/mca/base/Makefile config.status: creating opal/tools/wrappers/Makefile config.status: creating opal/tools/wrappers/opalcc-wrapper-data.txt config.status: creating opal/tools/wrappers/opalc++-wrapper-data.txt config.status: creating opal/tools/wrappers/opal.pc config.status: creating opal/tools/opal-checkpoint/Makefile config.status: creating opal/tools/opal-restart/Makefile config.status: creating orte/Makefile config.status: creating orte/include/Makefile config.status: creating orte/etc/Makefile config.status: creating orte/tools/orted/Makefile config.status: creating orte/tools/orterun/Makefile config.status: creating orte/tools/wrappers/Makefile config.status: creating orte/tools/wrappers/ortecc-wrapper-data.txt config.status: creating orte/tools/wrappers/ortec++-wrapper-data.txt config.status: creating orte/tools/wrappers/orte.pc config.status: creating orte/tools/orte-checkpoint/Makefile config.status: creating orte/tools/orte-iof/Makefile config.status: creating orte/tools/orte-restart/Makefile config.status: creating orte/tools/orte-ps/Makefile config.status: creating orte/tools/orte-clean/Makefile config.status: creating orte/tools/orte-top/Makefile config.status: creating orte/tools/orte-bootproxy/Makefile config.status: creating ompi/Makefile config.status: creating ompi/etc/Makefile config.status: creating ompi/include/Makefile config.status: creating ompi/include/mpif.h config.status: creating ompi/include/mpif-config.h config.status: creating ompi/datatype/Makefile config.status: creating ompi/debuggers/Makefile config.status: creating ompi/mpi/c/Makefile config.status: creating ompi/mpi/c/profile/Makefile config.status: creating ompi/mpi/cxx/Makefile config.status: creating ompi/mpi/f77/Makefile config.status: creating ompi/mpi/f77/profile/Makefile config.status: creating ompi/mpi/f90/Makefile config.status: creating ompi/mpi/f90/fortran_kinds.sh config.status: creating ompi/mpi/f90/fortran_sizes.h config.status: creating ompi/mpi/f90/scripts/Makefile config.status: creating ompi/tools/ompi_info/Makefile config.status: creating ompi/tools/wrappers/Makefile config.status: creating ompi/tools/wrappers/mpicc-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpic++-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpif77-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpif90-wrapper-data.txt config.status: creating ompi/tools/wrappers/ompi.pc config.status: creating ompi/tools/wrappers/ompi-c.pc config.status: creating ompi/tools/wrappers/ompi-cxx.pc config.status: creating ompi/tools/wrappers/ompi-f77.pc config.status: creating ompi/tools/wrappers/ompi-f90.pc config.status: creating ompi/tools/ortetools/Makefile config.status: creating ompi/tools/ompi-server/Makefile config.status: creating ompi/tools/ompi-probe/Makefile config.status: creating ompi/tools/ompi-profiler/Makefile config.status: creating opal/include/opal_config.h config.status: opal/include/opal_config.h is unchanged config.status: creating orte/include/orte_config.h config.status: orte/include/orte_config.h is unchanged config.status: creating ompi/include/ompi_config.h config.status: ompi/include/ompi_config.h is unchanged config.status: creating ompi/include/mpi.h config.status: ompi/include/mpi.h is unchanged config.status: creating ompi/include/mpi_portable_platform.h config.status: ompi/include/mpi_portable_platform.h is unchanged config.status: creating opal/mca/hwloc/hwloc132/hwloc/include/private/autogen/config.h config.status: opal/mca/hwloc/hwloc132/hwloc/include/private/autogen/config.h is unchanged config.status: creating opal/mca/hwloc/hwloc132/hwloc/include/hwloc/autogen/config.h config.status: opal/mca/hwloc/hwloc132/hwloc/include/hwloc/autogen/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands =============================================================================== Compiling OPENMPI/MPI; this may take several minutes =============================================================================== sh: cd /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 && /usr/bin/make clean Executing: cd /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 && /usr/bin/make clean sh: Making clean in test make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test' Making clean in util make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/util' rm -f opal_path_nfs test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f test_session_dir_out test-file opal_path_nfs.out rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/util' Making clean in datatype make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/datatype' rm -f opal_datatype_test checksum position ddt_test ddt_raw to_self ddt_pack test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/datatype' Making clean in threads make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/threads' rm -f opal_thread opal_condition test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/threads' Making clean in class make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/class' rm -f ompi_rb_tree opal_bitmap opal_hash_table opal_list opal_value_array opal_pointer_array test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f opal_bitmap_test_out.txt opal_hash_table_test_out.txt rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/class' Making clean in asm make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/asm' rm -f atomic_barrier atomic_barrier_noinline atomic_spinlock atomic_spinlock_noinline atomic_math atomic_math_noinline atomic_cmpset atomic_cmpset_noinline test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/asm' Making clean in support make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/support' test -z "libsupport.a" || rm -f libsupport.a test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test/support' Making clean in . make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test' make[1]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/test' Making clean in ompi make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi' Making clean in tools/ompi-profiler make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi-profiler' rm -f ompi-profiler test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi-profiler' Making clean in tools/ompi-probe make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi-probe' rm -f ompi-probe test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi-probe' Making clean in tools/ompi-server make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi-server' rm -f ompi-server test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi-server' Making clean in tools/ortetools make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ortetools' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ortetools' Making clean in tools/wrappers make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/wrappers' test -z "*~ .#* " || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/wrappers' Making clean in tools/ompi_info make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi_info' rm -f ompi_info test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -rf rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/tools/ompi_info' Making clean in contrib/libompitrace make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/contrib/libompitrace' test -z "*~ .#*" || rm -f *~ .#* test -z "libompitrace.la" || rm -f libompitrace.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/contrib/libompitrace' Making clean in mca/topo/unity make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/topo/unity' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_topo_unity.la" || rm -f mca_topo_unity.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/topo/unity' Making clean in mca/rcache/vma make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/rcache/vma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_rcache_vma.la" || rm -f mca_rcache_vma.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/rcache/vma' Making clean in mca/pubsub/orte make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pubsub/orte' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_pubsub_orte.la" || rm -f mca_pubsub_orte.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pubsub/orte' Making clean in mca/pml/v make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v' Making clean in mca/vprotocol/pessimist make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v/mca/vprotocol/pessimist' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_vprotocol_pessimist.la" || rm -f mca_vprotocol_pessimist.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v/mca/vprotocol/pessimist' Making clean in mca/vprotocol make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v/mca/vprotocol' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_vprotocol.la" || rm -f libmca_vprotocol.la rm -f "./so_locations" rm -f *.o rm -f base/vprotocol_base.o rm -f base/vprotocol_base.lo rm -f base/vprotocol_base_parasite.o rm -f base/vprotocol_base_parasite.lo rm -f base/vprotocol_base_request.o rm -f base/vprotocol_base_request.lo rm -f base/vprotocol_base_select.o rm -f base/vprotocol_base_select.lo rm -f *.lo make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v/mca/vprotocol' Making clean in . make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_pml_v.la" || rm -f mca_pml_v.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/v' make[2]: Leaving directory 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make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/cm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_pml_cm.la" || rm -f mca_pml_cm.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/cm' Making clean in mca/pml/bfo make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/bfo' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_pml_bfo.la" || rm -f mca_pml_bfo.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml/bfo' Making clean in mca/osc/rdma make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/osc/rdma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_osc_rdma.la" || rm -f mca_osc_rdma.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/osc/rdma' Making clean in mca/osc/pt2pt make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/osc/pt2pt' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_osc_pt2pt.la" || rm -f mca_osc_pt2pt.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/osc/pt2pt' Making clean in mca/mpool/sm make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/mpool/sm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_mpool_sm.la" || rm -f mca_mpool_sm.la rm -f 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Making clean in . make[5]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/mpi-io' rm -rf .libs _libs test -z "libmpi-io.la" || rm -f libmpi-io.la rm -f "./so_locations" rm -f *.o rm -f *.lo make[5]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/mpi-io' make[4]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/mpi-io' Making clean in adio make[4]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio' Making clean in ad_ufs make[5]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio/ad_ufs' rm -rf .libs _libs test -z "libadio_ufs.la" || rm -f libadio_ufs.la rm -f "./so_locations" rm -f *.o rm -f *.lo make[5]: Leaving directory 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Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio/include' rm -rf .libs _libs rm -f *.lo make[5]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio/include' Making clean in common make[5]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio/common' rm -rf .libs _libs test -z "libadio_common.la" || rm -f libadio_common.la rm -f "./so_locations" rm -f *.o rm -f *.lo make[5]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio/common' Making clean in . make[5]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io/romio/romio/adio' rm -rf .libs _libs test -z "libadio.la" || rm -f libadio.la rm -f "./so_locations" rm -f *.o rm -f *.lo make[5]: 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test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/allocator/bucket' Making clean in mca/allocator/basic make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/allocator/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "mca_allocator_basic.la" || rm -f mca_allocator_basic.la rm -f "./so_locations" test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/allocator/basic' Making clean in mca/common/sm make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/common/sm' test -z "*~ .#*" || rm -f *~ .#* test -z "libmca_common_sm.la" || rm -f libmca_common_sm.la rm -f "./so_locations" rm -rf .libs _libs if test -z "libmca_common_sm.la"; then \ rm -f "libmca_common_sm.la"; \ fi test -z "" || rm -f rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/common/sm' Making clean in mpi/f90 make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f90' Making clean in scripts make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f90/scripts' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f90/scripts' Making clean in . make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f90' test -z "*~ .#* mpi-f90-interfaces.h" || rm -f *~ .#* mpi-f90-interfaces.h test -z "libmpi_f90.la" || rm -f libmpi_f90.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o test -z 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`/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f77' test -z "*~ .#*" || rm -f *~ .#* test -z "libmpi_f77.la" || rm -f libmpi_f77.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f77' make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/f77' Making clean in mpi/cxx make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/cxx' test -z "*~ .#*" || rm -f *~ .#* test -z "libmpi_cxx.la " || rm -f libmpi_cxx.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mpi/cxx' Making clean in mca/topo make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/topo' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_topo.la" || rm -f libmca_topo.la rm -f "./so_locations" rm -f *.o rm -f base/topo_base_cart_coords.o rm -f base/topo_base_cart_coords.lo rm -f base/topo_base_cart_create.o rm -f base/topo_base_cart_create.lo rm -f base/topo_base_cart_get.o rm -f base/topo_base_cart_get.lo rm -f base/topo_base_cart_rank.o rm -f base/topo_base_cart_rank.lo rm -f base/topo_base_cart_shift.o rm -f base/topo_base_cart_shift.lo rm -f base/topo_base_cart_sub.o rm -f base/topo_base_cart_sub.lo rm -f base/topo_base_cartdim_get.o rm -f base/topo_base_cartdim_get.lo rm -f base/topo_base_close.o rm -f base/topo_base_close.lo rm -f base/topo_base_comm_select.o rm -f base/topo_base_comm_select.lo rm -f base/topo_base_comm_unselect.o rm -f base/topo_base_comm_unselect.lo rm -f base/topo_base_find_available.o rm -f 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base/rcache_base_create.o rm -f base/rcache_base_create.lo rm -f base/rcache_base_open.o rm -f base/rcache_base_open.lo rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/rcache' Making clean in mca/pubsub make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pubsub' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_pubsub.la" || rm -f libmca_pubsub.la rm -f "./so_locations" rm -f *.o rm -f base/pubsub_base_close.o rm -f base/pubsub_base_close.lo rm -f base/pubsub_base_null_fns.o rm -f base/pubsub_base_null_fns.lo rm -f base/pubsub_base_open.o rm -f base/pubsub_base_open.lo rm -f base/pubsub_base_select.o rm -f base/pubsub_base_select.lo rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pubsub' Making clean in mca/pml make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_pml.la" || rm -f libmca_pml.la rm -f "./so_locations" rm -f *.o rm -f base/pml_base_bsend.o rm -f base/pml_base_bsend.lo rm -f base/pml_base_close.o rm -f base/pml_base_close.lo rm -f base/pml_base_ft.o rm -f base/pml_base_ft.lo rm -f base/pml_base_open.o rm -f base/pml_base_open.lo rm -f base/pml_base_recvreq.o rm -f base/pml_base_recvreq.lo rm -f base/pml_base_request.o rm -f base/pml_base_request.lo rm -f base/pml_base_select.o rm -f base/pml_base_select.lo rm -f base/pml_base_sendreq.o rm -f base/pml_base_sendreq.lo rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/pml' Making clean in mca/osc make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/osc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_osc.la" || rm -f libmca_osc.la rm -f "./so_locations" rm -f *.o rm -f base/osc_base_close.o rm -f base/osc_base_close.lo rm -f base/osc_base_init.o rm -f base/osc_base_init.lo rm -f base/osc_base_obj_convert.o rm -f base/osc_base_obj_convert.lo rm -f base/osc_base_open.o rm -f base/osc_base_open.lo rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/osc' Making clean in mca/op make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/op' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_op.la" || rm -f libmca_op.la rm -f "./so_locations" rm -f *.o rm -f base/op_base_close.o rm -f base/op_base_close.lo rm -f base/op_base_find_available.o rm -f base/op_base_find_available.lo rm -f base/op_base_functions.o rm -f 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-z "libmca_mpool.la" || rm -f libmca_mpool.la rm -f "./so_locations" rm -f *.o rm -f base/mpool_base_alloc.o rm -f base/mpool_base_alloc.lo rm -f base/mpool_base_close.o rm -f base/mpool_base_close.lo rm -f base/mpool_base_init.o rm -f base/mpool_base_init.lo rm -f base/mpool_base_lookup.o rm -f base/mpool_base_lookup.lo rm -f base/mpool_base_mem_cb.o rm -f base/mpool_base_mem_cb.lo rm -f base/mpool_base_open.o rm -f base/mpool_base_open.lo rm -f base/mpool_base_tree.o rm -f base/mpool_base_tree.lo rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/mpool' Making clean in mca/io make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/ompi/mca/io' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_io.la" || rm -f libmca_io.la rm -f "./so_locations" rm -f *.o rm -f base/io_base_close.o rm -f base/io_base_close.lo rm -f 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test -z "dlopen.la libltdlc.la" || rm -f dlopen.la libltdlc.la rm -f "./so_locations" rm -f "./so_locations" rm -f *.o test -z "argz.h argz.h-t" || rm -f argz.h argz.h-t rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' Making clean in include make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' Making clean in . make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal' test -z "*~ .#*" || rm -f *~ .#* test -z "libopen-pal.la" || rm -f libopen-pal.la rm -f "./so_locations" rm -rf .libs _libs rm -rf class/.libs class/_libs rm -rf dss/.libs dss/_libs rm -rf memoryhooks/.libs memoryhooks/_libs rm -rf runtime/.libs runtime/_libs rm -rf threads/.libs threads/_libs rm -rf win32/.libs win32/_libs test -z "libopen-pal-lt.la" || rm -f libopen-pal-lt.la rm -f "./so_locations" rm -f *.o rm -f class/opal_atomic_lifo.o rm -f class/opal_atomic_lifo.lo rm -f class/opal_bitmap.o rm -f class/opal_bitmap.lo rm -f class/opal_free_list.o rm -f class/opal_free_list.lo rm -f class/opal_graph.o rm -f class/opal_graph.lo rm -f class/opal_hash_table.o rm -f class/opal_hash_table.lo rm -f class/opal_list.o rm -f class/opal_list.lo rm -f class/opal_object.o rm -f class/opal_object.lo rm -f class/opal_pointer_array.o rm -f class/opal_pointer_array.lo rm -f class/opal_ring_buffer.o rm -f class/opal_ring_buffer.lo rm -f class/opal_value_array.o rm -f class/opal_value_array.lo rm -f dss/dss_compare.o rm -f dss/dss_compare.lo rm -f dss/dss_copy.o rm -f dss/dss_copy.lo rm -f dss/dss_dump.o rm -f dss/dss_dump.lo rm -f dss/dss_get.o rm -f dss/dss_get.lo rm -f dss/dss_internal_functions.o rm -f dss/dss_internal_functions.lo rm 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`/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/config' Making all in contrib make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/contrib' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/contrib' Making all in opal make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal' Making all in include make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' /usr/bin/make all-am make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' Making all in libltdl make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' /usr/bin/make all-am make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c -o libltdlc_la-preopen.lo `test -f 'loaders/preopen.c' || echo './'`loaders/preopen.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c -o libltdlc_la-lt__alloc.lo `test -f 'lt__alloc.c' || echo './'`lt__alloc.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c -o libltdlc_la-lt_dlloader.lo `test -f 'lt_dlloader.c' || echo './'`lt_dlloader.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c -o libltdlc_la-lt_error.lo `test -f 'lt_error.c' || echo './'`lt_error.c libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c lt__alloc.c -fPIC -DPIC -o .libs/libltdlc_la-lt__alloc.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c lt_error.c -fPIC -DPIC -o .libs/libltdlc_la-lt_error.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c lt_dlloader.c -fPIC -DPIC -o .libs/libltdlc_la-lt_dlloader.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c loaders/preopen.c -fPIC -DPIC -o .libs/libltdlc_la-preopen.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c -fPIC -DPIC -o .libs/dlopen.o make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' make[1]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal' **** Configure header conftest.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_MEMORY_H #define PETSC_HAVE_MEMORY_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "linux-gnu-cxx-opt" #endif #ifndef PETSC_DIR #define PETSC_DIR "/home/hills/seska/packages/petsc" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_MISSING_DREAL #define PETSC_MISSING_DREAL 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETPWUID #define PETSC_HAVE_GETPWUID 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #endif **** C specific Configure header conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make on OPENMPI/MPI: Could not execute "cd /home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5 && /usr/bin/make -j 5 all": Making all in config make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/config' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/config' Making all in contrib make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/contrib' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/contrib' Making all in opal make[1]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal' Making all in include make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' /usr/bin/make all-am make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/include' Making all in libltdl make[2]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' /usr/bin/make all-am make[3]: Entering directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c -o libltdlc_la-preopen.lo `test -f 'loaders/preopen.c' || echo './'`loaders/preopen.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c -o libltdlc_la-lt__alloc.lo `test -f 'lt__alloc.c' || echo './'`lt__alloc.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c -o libltdlc_la-lt_dlloader.lo `test -f 'lt_dlloader.c' || echo './'`lt_dlloader.c /bin/bash ./libtool --tag=CC --mode=compile /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c -o libltdlc_la-lt_error.lo `test -f 'lt_error.c' || echo './'`lt_error.c libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c lt__alloc.c -fPIC -DPIC -o .libs/libltdlc_la-lt__alloc.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c lt_error.c -fPIC -DPIC -o .libs/libltdlc_la-lt_error.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c lt_dlloader.c -fPIC -DPIC -o .libs/libltdlc_la-lt_dlloader.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c loaders/preopen.c -fPIC -DPIC -o .libs/libltdlc_la-preopen.o libtool: compile: /home/hills/seska/packages/tau/x86_64/bin/tau_cc.sh -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -D_REENTRANT -I/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/mca/hwloc/hwloc132/hwloc/include -I/usr/include/infiniband -I/usr/include/infiniband -fPIC -g -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c -fPIC -DPIC -o .libs/dlopen.o make[3]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' make[2]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl' make[1]: Leaving directory `/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal' In file included from lt__alloc.c:31:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from lt_error.c:31:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from lt_dlloader.c:31:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from loaders/preopen.c:32:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from loaders/dlopen.c:32:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from loaders/dlopen.c:32: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from loaders/preopen.c:32: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from lt__alloc.c:31: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from lt_error.c:31: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from lt_dlloader.c:31: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' tokenlibltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token In file included from libltdl/lt__private.h:53:0, from loaders/preopen.c:32: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:53:0, from lt_error.c:31: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:53:0, from lt__alloc.c:31: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:53:0, from loaders/dlopen.c:32: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:53:0, from lt_dlloader.c:31: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from lt__alloc.c:31: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from loaders/dlopen.c:32: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from loaders/preopen.c:32: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from lt_error.c:31: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from lt_dlloader.c:31: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from lt__alloc.c:31: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default]In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from loaders/dlopen.c:32: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default]In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from lt_error.c:31: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from lt__alloc.c:31: libltdl/lt_system.h:124:0: note: this is the location of the previous definitionIn file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from lt_error.c:31: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from loaders/dlopen.c:32: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from lt_dlloader.c:31: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default]In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from loaders/preopen.c:32: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from loaders/preopen.c:32: libltdl/lt_system.h:124:0: note: this is the location of the previous definitionIn file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from lt_dlloader.c:31: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from lt_error.c:31: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from lt__alloc.c:31: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from loaders/dlopen.c:32: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from lt__alloc.c:31: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from lt_error.c:31: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next'./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE'./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:57:0, from lt_error.c:31: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'In file included from libltdl/lt__private.h:57:0, from lt__alloc.c:31: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from loaders/preopen.c:32: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from lt_dlloader.c:31: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from loaders/dlopen.c:32: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:77:1: error: unknown type name 'LT_SCOPE'./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen'./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext'./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext'./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise'./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from libltdl/lt__private.h:57:0, from loaders/dlopen.c:32: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE'./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from lt_dlloader.c:31: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from loaders/preopen.c:32: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE'./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE'./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE'./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next'./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next'./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE'./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' In file included from lt_error.c:31:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext'In file included from lt__alloc.c:31:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:57:0, from lt_dlloader.c:31: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'In file included from libltdl/lt__private.h:57:0, from loaders/preopen.c:32: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE'./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen'./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen'./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE'./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext'./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE'./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise'./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void'./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE'./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register'./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void'./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void'./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' In file included from loaders/dlopen.c:32:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void'./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE'./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate'./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE'./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch'./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int'./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from lt_dlloader.c:31:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void'In file included from loaders/preopen.c:32:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' lt_error.c:92:1: error: conflicting types for 'lt__error_string' lt_error.c:74:7: note: previous implicit declaration of 'lt__error_string' was here loaders/dlopen.c:42:1: error: unknown type name 'LT_SCOPE' loaders/dlopen.c:42:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const'libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' lt_error.c:107:1: error: conflicting types for 'lt__set_last_error' lt_error.c:74:7: note: previous implicit declaration of 'lt__set_last_error' was here loaders/preopen.c:42:1: error: unknown type name 'LT_SCOPE' loaders/preopen.c:42:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token loaders/dlopen.c: In function 'vm_open': loaders/dlopen.c:194:10: warning: assignment makes pointer from integer without a cast [enabled by default] loaders/dlopen.c: In function 'vm_sym': loaders/dlopen.c:227:19: warning: initialization makes pointer from integer without a cast [enabled by default] lt_dlloader.c: In function 'lt_dlloader_remove': lt_dlloader.c:155:32: warning: initialization makes pointer from integer without a cast [enabled by default] lt_dlloader.c:169:9: warning: assignment makes pointer from integer without a cast [enabled by default] lt_dlloader.c:170:18: warning: assignment makes pointer from integer without a cast [enabled by default] lt_dlloader.c: At top level: lt_dlloader.c:207:1: error: conflicting types for 'lt_dlloader_find' lt_dlloader.c:155:32: note: previous implicit declaration of 'lt_dlloader_find' was here make[4]: *** [all] Error 1 make[4]: *** [all] Error 1 loaders/preopen.c: In function 'lt_dlpreload_open': loaders/preopen.c:371:26: warning: initialization makes pointer from integer without a cast [enabled by default] make[4]: *** [all] Error 1 make[4]: *** [all] Error 1 make[4]: *** [all] Error 1 "libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ 1 catastrophic error detected in the compilation of "loaders/dlopen.c". Compilation terminated. ""libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ 1 catastrophic error detected in the compilation of "lt__alloc.c". Compilation terminated. libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ 1 catastrophic error detected in the compilation of "loaders/preopen.c". Compilation terminated. "libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ 1 catastrophic error detected in the compilation of "lt_error.c". Compilation terminated. "libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ 1 catastrophic error detected in the compilation of "lt_dlloader.c". Compilation terminated. "/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl/libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ "/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl/libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ "/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl/libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ "/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl/libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ "/home/hills/seska-hills/packages/petsc-3.4.2/externalpackages/openmpi-1.6.5/opal/libltdl/libltdl/lt__private.h", line 35: catastrophic error: expected a file name # include LT_CONFIG_H ^ terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) terminate called after throwing an instance of 'rose_exception' what(): Errors in Processing: (frontend_failed) Aborted (core dumped) Aborted (core dumped) Aborted (core dumped) In file included from lt_dlloader.c:31:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from lt_error.c:31:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from loaders/preopen.c:32:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from lt_dlloader.c:31: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token In file included from libltdl/lt__private.h:53:0, from lt_dlloader.c:31: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from lt_dlloader.c:31: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from lt_dlloader.c:31: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from lt_dlloader.c:31: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from lt_dlloader.c:31: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from lt_dlloader.c:31: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:57:0, from lt_dlloader.c:31: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from lt_dlloader.c:31:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' lt_dlloader.c: In function 'lt_dlloader_remove': lt_dlloader.c:155:32: warning: initialization makes pointer from integer without a cast [enabled by default] lt_dlloader.c:169:9: warning: assignment makes pointer from integer without a cast [enabled by default] lt_dlloader.c:170:18: warning: assignment makes pointer from integer without a cast [enabled by default] lt_dlloader.c: At top level: lt_dlloader.c:207:1: error: conflicting types for 'lt_dlloader_find' lt_dlloader.c:155:32: note: previous implicit declaration of 'lt_dlloader_find' was here make[4]: *** [all] Error 1 make[3]: *** [libltdlc_la-lt_dlloader.lo] Error 1 make[3]: *** Waiting for unfinished jobs.... In file included from libltdl/lt__private.h:52:0, from lt_error.c:31: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token In file included from libltdl/lt__private.h:53:0, from lt_error.c:31: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from lt_error.c:31: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from lt_error.c:31: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from lt_error.c:31: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from lt_error.c:31: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from lt_error.c:31: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:57:0, from lt_error.c:31: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from lt_error.c:31:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' lt_error.c:92:1: error: conflicting types for 'lt__error_string' lt_error.c:74:7: note: previous implicit declaration of 'lt__error_string' was here lt_error.c:107:1: error: conflicting types for 'lt__set_last_error' lt_error.c:74:7: note: previous implicit declaration of 'lt__set_last_error' was here make[4]: *** [all] Error 1 In file included from libltdl/lt__private.h:52:0, from loaders/preopen.c:32: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token In file included from libltdl/lt__private.h:53:0, from loaders/preopen.c:32: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from loaders/preopen.c:32: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or make[3]: *** [libltdlc_la-lt_error.lo] Error 1 In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from loaders/preopen.c:32: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from loaders/preopen.c:32: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from loaders/preopen.c:32: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from loaders/preopen.c:32: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:57:0, from loaders/preopen.c:32: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from loaders/preopen.c:32:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' loaders/preopen.c:42:1: error: unknown type name 'LT_SCOPE' loaders/preopen.c:42:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token loaders/preopen.c: In function 'lt_dlpreload_open': loaders/preopen.c:371:26: warning: initialization makes pointer from integer without a cast [enabled by default] make[4]: *** [all] Error 1 make[3]: *** [libltdlc_la-preopen.lo] Error 1 Aborted (core dumped) Aborted (core dumped) In file included from lt__alloc.c:31:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from loaders/dlopen.c:32:0: libltdl/lt__private.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:52:0, from lt__alloc.c:31: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token In file included from libltdl/lt__private.h:53:0, from lt__alloc.c:31: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from lt__alloc.c:31: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from lt__alloc.c:31: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from lt__alloc.c:31: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from lt__alloc.c:31: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from lt__alloc.c:31: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:57:0, from lt__alloc.c:31: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from lt__alloc.c:31:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' In file included from libltdl/lt__private.h:52:0, from loaders/dlopen.c:32: libltdl/lt__dirent.h:35:23: error: #include expects "FILENAME" or libltdl/lt__dirent.h:84:7: error: expected '=', ',', ';', 'asm' or '__attribute__' before '-' token In file included from libltdl/lt__private.h:53:0, from loaders/dlopen.c:32: libltdl/lt__strl.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__private.h:54:0, from loaders/dlopen.c:32: libltdl/lt__glibc.h:35:23: error: #include expects "FILENAME" or In file included from libltdl/lt__glibc.h:81:0, from libltdl/lt__private.h:54, from loaders/dlopen.c:32: libltdl/slist.h:48:0: warning: "LT_SCOPE" redefined [enabled by default] In file included from libltdl/lt__alloc.h:34:0, from libltdl/lt__private.h:51, from loaders/dlopen.c:32: libltdl/lt_system.h:124:0: note: this is the location of the previous definition In file included from ./ltdl.h:37:0, from libltdl/lt__private.h:57, from loaders/dlopen.c:32: ./libltdl/lt_error.h:79:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_error.h:80:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from ./ltdl.h:38:0, from libltdl/lt__private.h:57, from loaders/dlopen.c:32: ./libltdl/lt_dlloader.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./libltdl/lt_dlloader.h:74:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:74:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlloader_next' ./libltdl/lt_dlloader.h:76:1: error: unknown type name 'LT_SCOPE' ./libltdl/lt_dlloader.h:76:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token ./libltdl/lt_dlloader.h:77:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' make[4]: ./libltdl/lt_dlloader.h:78:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' *** [all] Error 1 In file included from libltdl/lt__private.h:57:0, from loaders/dlopen.c:32: ./ltdl.h:53:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:54:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:57:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:58:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:60:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:61:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:62:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:68:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:69:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:70:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:71:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:72:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:73:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:74:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:77:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:77:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopen' ./ltdl.h:78:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:78:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenext' ./ltdl.h:79:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:79:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlopenadvise' ./ltdl.h:81:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:82:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:83:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:99:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:100:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:101:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:121:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:121:28: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlinterface_register' ./ltdl.h:123:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:124:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:126:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' ./ltdl.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' ./ltdl.h:145:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:145:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_iterate' ./ltdl.h:147:1: error: unknown type name 'LT_SCOPE' ./ltdl.h:147:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'lt_dlhandle_fetch' ./ltdl.h:149:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:156:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' ./ltdl.h:157:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'int' In file included from loaders/dlopen.c:32:0: libltdl/lt__private.h:93:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'void' libltdl/lt__private.h:143:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:144:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' libltdl/lt__private.h:145:10: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'const' loaders/dlopen.c:42:1: error: unknown type name 'LT_SCOPE' loaders/dlopen.c:42:22: error: expected '=', ',', ';', 'asm' or '__attribute__' before '*' token loaders/dlopen.c: In function 'vm_open': loaders/dlopen.c:194:10: warning: assignment makes pointer from integer without a cast [enabled by default] loaders/dlopen.c: In function 'vm_sym': loaders/dlopen.c:227:19: warning: initialization makes pointer from integer without a cast [enabled by default] make[3]: *** [libltdlc_la-lt__alloc.lo] Error 1 make[4]: *** [all] Error 1 make[3]: *** [dlopen.lo] Error 1 make[2]: *** [all] Error 2 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 ******************************************************************************* File "./config/configure.py", line 293, in petsc_configure framework.configure(out = sys.stdout) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/framework.py", line 933, in configure child.configure() File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/package.py", line 556, in configure self.executeTest(self.configureLibrary) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/packages/MPI.py", line 748, in configureLibrary config.package.Package.configureLibrary(self) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/package.py", line 484, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/package.py", line 232, in generateGuesses d = self.checkDownload(1) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/packages/MPI.py", line 361, in checkDownload return config.package.Package.checkDownload(self, requireDownload) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/package.py", line 340, in checkDownload return self.getInstallDir() File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/package.py", line 187, in getInstallDir return os.path.abspath(self.Install()) File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/packages/MPI.py", line 368, in Install return self.InstallOpenMPI() File "/home/hills/seska-hills/packages/petsc-3.4.2/config/BuildSystem/config/packages/MPI.py", line 445, in InstallOpenMPI raise RuntimeError('Error running make on OPENMPI/MPI: '+str(e))