Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Sat Sep 6 11:49:13 2014 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc=gcc --with-cxx=g++ --with-fc=0 --download-f2cblaslapack --download-mpich --with-pcbddc --useThreads=0 Working directory: /home/semih/petsc Machine platform: ('CYGWIN_NT-6.1', 'semih-PC', '1.7.32(0.274/5/3)', '2014-08-13 23:06', 'x86_64', '') Python version: 2.7.8 (default, Jul 25 2014, 14:04:36) [GCC 4.8.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/semih/petsc/config/BuildSystem/config/framework.py:823) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:823) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/semih/petsc/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/gdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/gdb...not found Checking for program /cygdrive/c/MSMPI/Bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/gdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/gdb...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/gdb...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/gdb...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/gdb...not found Checking for program /cygdrive/c/Windows/system32/gdb...not found Checking for program /cygdrive/c/Windows/gdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/gdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/gdb...not found Checking for program /home/semih/gdb...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/dbx...not found Checking for program /cygdrive/c/MSMPI/Bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/dbx...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/dbx...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/dbx...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/dbx...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/dbx...not found Checking for program /cygdrive/c/Windows/system32/dbx...not found Checking for program /cygdrive/c/Windows/dbx...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/dbx...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/dbx...not found Checking for program /home/semih/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/xdb...not found Checking for program /cygdrive/c/MSMPI/Bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/xdb...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/xdb...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/xdb...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/xdb...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/xdb...not found Checking for program /cygdrive/c/Windows/system32/xdb...not found Checking for program /cygdrive/c/Windows/xdb...not found Checking for program /cygdrive/c/Windows/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/xdb...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/xdb...not found Checking for program /home/semih/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/dsymutil...not found Checking for program /cygdrive/c/MSMPI/Bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/dsymutil...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/dsymutil...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/dsymutil...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/dsymutil...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/dsymutil...not found Checking for program /cygdrive/c/Windows/system32/dsymutil...not found Checking for program /cygdrive/c/Windows/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/dsymutil...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/dsymutil...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/dsymutil...not found Checking for program /home/semih/dsymutil...not found Defined make macro "DSYMUTIL" to "true" ================================================================================ TEST configureGit from config.sourceControl(/home/semih/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.1.0 ================================================================================ TEST configureMercurial from config.sourceControl(/home/semih/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/hg...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/hg...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/hg...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/hg...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/hg...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/hg...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/hg...not found Checking for program /cygdrive/c/MSMPI/Bin/hg...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/hg...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/hg...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/hg...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/hg...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/hg...not found Checking for program /cygdrive/c/Windows/system32/hg...not found Checking for program /cygdrive/c/Windows/hg...not found Checking for program /cygdrive/c/Windows/System32/Wbem/hg...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/hg...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/hg...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/hg...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/hg...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/hg...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/hg...not found Checking for program /home/semih/hg...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/semih/petsc/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/cvs...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/cvs...not found Checking for program /cygdrive/c/MSMPI/Bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/cvs...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/cvs...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/cvs...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/cvs...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/cvs...not found Checking for program /cygdrive/c/Windows/system32/cvs...not found Checking for program /cygdrive/c/Windows/cvs...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cvs...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/cvs...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/cvs...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/cvs...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cvs...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/cvs...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/cvs...not found Checking for program /home/semih/cvs...not found ================================================================================ TEST configureSubversion from config.sourceControl(/home/semih/petsc/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/svn...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/svn...not found Checking for program /cygdrive/c/MSMPI/Bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/svn...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/svn...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/svn...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/svn...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/svn...not found Checking for program /cygdrive/c/Windows/system32/svn...not found Checking for program /cygdrive/c/Windows/svn...not found Checking for program /cygdrive/c/Windows/System32/Wbem/svn...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/svn...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/svn...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/svn...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/svn...not found Checking for program /home/semih/svn...not found ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/semih/petsc/config/PETSc/utilities/languages.py:27) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/semih/petsc/config/PETSc/utilities/petscdir.py:23) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 5 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/semih/petsc" ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscclone(/home/semih/petsc/config/PETSc/utilities/petscclone.py:15) TESTING: configureInstallationMethod from PETSc.utilities.petscclone(config/PETSc/utilities/petscclone.py:15) bin/maint exists. This appears to be a repository clone Defined "VERSION_GIT" to ""v3.5-42-g51cb09f"" Defined "VERSION_DATE_GIT" to ""2014-08-24 10:36:47 +0300"" ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/semih/petsc/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise WARNING: ETags files have not been created Checking for program /usr/local/bin/etags...not found Checking for program /usr/bin/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/etags...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/etags...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/etags...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/etags...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/etags...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/etags...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/etags...not found Checking for program /cygdrive/c/MSMPI/Bin/etags...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/etags...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/etags...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/etags...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/etags...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/etags...not found Checking for program /cygdrive/c/Windows/system32/etags...not found Checking for program /cygdrive/c/Windows/etags...not found Checking for program /cygdrive/c/Windows/System32/Wbem/etags...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/etags...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/etags...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/etags...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/etags...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/etags...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/etags...not found Checking for program /home/semih/etags...not found Checking for program /home/semih/petsc/bin/win32fe/etags...not found The etags command is not in your path, cannot build etags files ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/semih/petsc/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/semih/petsc/config/PETSc/utilities/arch.py:25) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-mswin-c-debug"" ================================================================================ TEST setInstallDir from PETSc.utilities.installDir(/home/semih/petsc/config/PETSc/utilities/installDir.py:27) TESTING: setInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:27) setup installDir to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.utilities.installDir(/home/semih/petsc/config/PETSc/utilities/installDir.py:53) TESTING: saveReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:53) ================================================================================ TEST cleanInstallDir from PETSc.utilities.installDir(/home/semih/petsc/config/PETSc/utilities/installDir.py:46) TESTING: cleanInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:46) ================================================================================ TEST configureInstallDir from PETSc.utilities.installDir(/home/semih/petsc/config/PETSc/utilities/installDir.py:31) TESTING: configureInstallDir from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:31) Makes installDir subdirectories if it does not exist Changed persistence directory to /home/semih/petsc/arch-mswin-c-debug/conf ================================================================================ TEST restoreReconfigure from PETSc.utilities.installDir(/home/semih/petsc/config/PETSc/utilities/installDir.py:66) TESTING: restoreReconfigure from PETSc.utilities.installDir(config/PETSc/utilities/installDir.py:66) ================================================================================ TEST setExternalPackagesDir from PETSc.utilities.externalpackagesdir(/home/semih/petsc/config/PETSc/utilities/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(/home/semih/petsc/config/PETSc/utilities/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.utilities.externalpackagesdir(config/PETSc/utilities/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1515) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1515) **** printenv **** LIB=C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Windows Kits\8.0\lib\win8\um\x64;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB;C:\Program Files (x86)\Windows Kits\8.0\lib\win8\um\x86; VS100COMNTOOLS=c:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ INTEL_64_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\compiler\lib\intel64 COMPUTERNAME=SEMIH-PC INTEL_32_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\compiler\lib\ia32 !C:=C:\cygwin64\bin INFOPATH=/usr/local/info:/usr/share/info:/usr/info SHELL=/bin/bash WindowsSdkDir_35=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\Bin\ CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files USERDOMAIN=semih-PC FrameworkVersion64=v4.0.30319 FrameworkDir=C:\Windows\Microsoft.NET\Framework64 PROFILEREAD=true COMSPEC=C:\Windows\system32\cmd.exe CUDA_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\ MSMPI_LIB64=C:\MSMPI\Lib\amd64\ ICPP_COMPILER12=C:\Program Files (x86)\Intel\ComposerXE-2011\ WindowsSdkDir_old=C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0A\ VTUNE_AMPLIFIER_XE_2011_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2011\ INSPECTOR_XE_2011_DIR=C:\Program Files (x86)\Intel\Inspector XE 2011\ HOMEDRIVE=C: SYSTEMDRIVE=C: HOSTNAME=semih-PC CUDA_BIN_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\\bin PROCESSOR_LEVEL=6 FrameworkDIR32=C:\Windows\Microsoft.NET\Framework\ OS=Windows_NT MPICH2_32_LIB=C:\Program Files (x86)\MPICH2\lib FSHARPINSTALLDIR=C:\Program Files (x86)\Microsoft SDKs\F#\3.0\Framework\v4.0\ Platform=X64 CommandPromptType=Native USER=semih MPICH2_64_LIB=C:\Program Files\MPICH2\lib PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ TEMP=/tmp SHLVL=1 CUDA_LIB_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\\lib\x64 DevEnvDir=C:\Program Files (x86)\Microsoft Visual Studio 11.0\Common7\IDE\ HOMEPATH=\Users\semih WindowsSdkDir=C:\Program Files (x86)\Windows Kits\8.0\ FrameworkVersion=v4.0.30319 MPICH2_64_INC=C:\Program Files\MPICH2\include LOGONSERVER=\\SEMIH-PC BOOST_32_LIB=C:\Program Files (x86)\boost_1_47_0\lib32 PRINTER=PDFCreator SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Windows Kits\8.0\include\shared;C:\Program Files (x86)\Windows Kits\8.0\include\um;C:\Program Files (x86)\Windows Kits\8.0\include\winrt;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Windows Kits\8.0\include\shared;C:\Program Files (x86)\Windows Kits\8.0\include\um;C:\Program Files (x86)\Windows Kits\8.0\include\winrt; _=./configure CUDA_PATH_V4_0=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\ APPDATA=C:\Users\semih\AppData\Roaming BOOST_INC=C:\Program Files (x86)\boost_1_47_0 TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ VS110COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 11.0\Common7\Tools\ INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses ADINAHOME89=C:\ADINA89 COMMONPROGRAMFILES=C:\Program Files\Common Files LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Windows Kits\8.0\References\CommonConfiguration\Neutral;C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0\ExtensionSDKs\Microsoft.VCLibs\11.0\References\CommonConfiguration\neutral;C:\Windows\Microsoft.NET\Framework\v4.0.30319;C:\Windows\Microsoft.NET\Framework\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB;C:\Program Files (x86)\Windows Kits\8.0\References\CommonConfiguration\Neutral;C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0\ExtensionSDKs\Microsoft.VCLibs\11.0\References\CommonConfiguration\neutral; HOME=/home/semih INTEL_INC=C:\Program Files (x86)\Intel\ComposerXE-2011\compiler\include LANG=en_US.UTF-8 ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=AMD64 ALLUSERSPROFILE=C:\ProgramData VisualStudioVersion=11.0 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=semih FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G FrameworkVersion32=v4.0.30319 TBB30_INSTALL_DIR=C:\Program Files (x86)\Intel\ComposerXE-2011\tbb MPICH2_32_BIN=C:\Program Files (x86)\MPICH2\bin PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC;.tcl CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 NUMBER_OF_PROCESSORS=8 MPICH2_32_INC=C:\Program Files (x86)\MPICH2\include MSMPI_INC=C:\MSMPI\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\semih IFORT_COMPILER12=C:\Program Files (x86)\Intel\ComposerXE-2011\ CUDA_INC_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\\include ORIGINAL_PATH=/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/MSMPI/Bin:/cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Windows Live/Shared:/cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64:/cygdrive/c/Program Files/MATLAB/R2014a/bin:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit:/cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 30 Stepping 5, GenuineIntel PROGRAMFILES=C:\Program Files PROCESSOR_REVISION=1e05 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/MSMPI/Bin:/cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Windows Live/Shared:/cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64:/cygdrive/c/Program Files/MATLAB/R2014a/bin:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit:/cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn MSMPI_BIN=C:\Program Files\Microsoft HPC Pack 2008 R2\Bin\ TERM=cygwin TZ=Europe/Bucharest MKL_32_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\mkl\lib\ia32 VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 11.0\ MPICH2_64_BIN=C:\Program Files\MPICH2\bin !::=::\ LOCALAPPDATA=C:\Users\semih\AppData\Local ExtensionSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0\ExtensionSDKs SYSTEMROOT=C:\Windows MKL_INC=C:\Program Files (x86)\Intel\ComposerXE-2011\mkl\include EXECIGNORE=*.dll MKL_64_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\mkl\lib\intel64 FP_NO_HOST_CHECK=NO OLDPWD=/home/semih PWD=/home/semih/petsc BOOST_64_LIB=C:\Program Files (x86)\boost_1_47_0\lib64 MSMPI_LIB32=C:\MSMPI\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1522) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1522) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1487) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1487) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1506) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:524) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:524) Locate a functional C compiler Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C All intermediate test results are stored in /tmp/petsc-DZOa4u All intermediate test results are stored in /tmp/petsc-DZOa4u/config.setCompilers Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:559) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:559) Locate a functional C preprocessor Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 12 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 17 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 19 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/machine/stdlib.h" 1 3 4 # 17 "/usr/include/machine/stdlib.h" 3 4 char *mkdtemp (char *); # 20 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 22 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/cygwin/stdlib.h" 1 3 4 # 14 "/usr/include/cygwin/stdlib.h" 3 4 # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 15 "/usr/include/cygwin/stdlib.h" 2 3 4 __uint32_t arc4random(void); void arc4random_addrandom(unsigned char *, int); void arc4random_buf(void *, size_t); void arc4random_stir(void); __uint32_t arc4random_uniform(__uint32_t); const char *getprogname (void); void setprogname (const char *); char *canonicalize_file_name (const char *); int unsetenv (const char *); char *initstate (unsigned seed, char *state, size_t size); long random (void); char *setstate (const char *state); void srandom (unsigned); char *ptsname (int); int ptsname_r(int, char *, size_t); int getpt (void); int grantpt (int); int unlockpt (int); int posix_openpt (int); int posix_memalign (void **, size_t, size_t); extern void * memalign (size_t, size_t); extern void * valloc (size_t); # 26 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; typedef int (*__compar_fn_t) (const void *, const void *); int __attribute__((__cdecl__)) __locale_mb_cur_max (void); void __attribute__((__cdecl__)) abort (void) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) abs (int); int __attribute__((__cdecl__)) atexit (void (*__func)(void)); double __attribute__((__cdecl__)) atof (const char *__nptr); float __attribute__((__cdecl__)) atoff (const char *__nptr); int __attribute__((__cdecl__)) atoi (const char *__nptr); int __attribute__((__cdecl__)) _atoi_r (struct _reent *, const char *__nptr); long __attribute__((__cdecl__)) atol (const char *__nptr); long __attribute__((__cdecl__)) _atol_r (struct _reent *, const char *__nptr); void * __attribute__((__cdecl__)) bsearch (const void * __key, const void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar) ; void * __attribute__((__cdecl__)) calloc (size_t __nmemb, size_t __size) ; div_t __attribute__((__cdecl__)) div (int __numer, int __denom); void __attribute__((__cdecl__)) exit (int __status) __attribute__ ((__noreturn__)); void __attribute__((__cdecl__)) free (void *) ; char * __attribute__((__cdecl__)) getenv (const char *__string); char * __attribute__((__cdecl__)) _getenv_r (struct _reent *, const char *__string); char * __attribute__((__cdecl__)) _findenv (const char *, int *); char * __attribute__((__cdecl__)) _findenv_r (struct _reent *, const char *, int *); extern char *suboptarg; int __attribute__((__cdecl__)) getsubopt (char **, char * const *, char **); long __attribute__((__cdecl__)) labs (long); ldiv_t __attribute__((__cdecl__)) ldiv (long __numer, long __denom); void * __attribute__((__cdecl__)) malloc (size_t __size) ; int __attribute__((__cdecl__)) mblen (const char *, size_t); int __attribute__((__cdecl__)) _mblen_r (struct _reent *, const char *, size_t, _mbstate_t *); int __attribute__((__cdecl__)) mbtowc (wchar_t *__restrict, const char *__restrict, size_t); int __attribute__((__cdecl__)) _mbtowc_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); int __attribute__((__cdecl__)) wctomb (char *, wchar_t); int __attribute__((__cdecl__)) _wctomb_r (struct _reent *, char *, wchar_t, _mbstate_t *); size_t __attribute__((__cdecl__)) mbstowcs (wchar_t *__restrict, const char *__restrict, size_t); size_t __attribute__((__cdecl__)) _mbstowcs_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); size_t __attribute__((__cdecl__)) wcstombs (char *__restrict, const wchar_t *__restrict, size_t); size_t __attribute__((__cdecl__)) _wcstombs_r (struct _reent *, char *__restrict, const wchar_t *__restrict, size_t, _mbstate_t *); char * __attribute__((__cdecl__)) mkdtemp (char *); int __attribute__((__cdecl__)) mkostemp (char *, int); int __attribute__((__cdecl__)) mkostemps (char *, int, int); int __attribute__((__cdecl__)) mkstemp (char *); int __attribute__((__cdecl__)) mkstemps (char *, int); char * __attribute__((__cdecl__)) mktemp (char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); char * __attribute__((__cdecl__)) _mkdtemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkostemp_r (struct _reent *, char *, int); int __attribute__((__cdecl__)) _mkostemps_r (struct _reent *, char *, int, int); int __attribute__((__cdecl__)) _mkstemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkstemps_r (struct _reent *, char *, int); char * __attribute__((__cdecl__)) _mktemp_r (struct _reent *, char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); void __attribute__((__cdecl__)) qsort (void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar); int __attribute__((__cdecl__)) rand (void); void * __attribute__((__cdecl__)) realloc (void * __r, size_t __size) ; void * __attribute__((__cdecl__)) reallocf (void * __r, size_t __size); char * __attribute__((__cdecl__)) realpath (const char *__restrict path, char *__restrict resolved_path); void __attribute__((__cdecl__)) srand (unsigned __seed); double __attribute__((__cdecl__)) strtod (const char *__restrict __n, char **__restrict __end_PTR); double __attribute__((__cdecl__)) _strtod_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR); float __attribute__((__cdecl__)) strtof (const char *__restrict __n, char **__restrict __end_PTR); long __attribute__((__cdecl__)) strtol (const char *__restrict __n, char **__restrict __end_PTR, int __base); long __attribute__((__cdecl__)) _strtol_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) strtoul (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) _strtoul_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); int __attribute__((__cdecl__)) system (const char *__string); long __attribute__((__cdecl__)) a64l (const char *__input); char * __attribute__((__cdecl__)) l64a (long __input); char * __attribute__((__cdecl__)) _l64a_r (struct _reent *,long __input); int __attribute__((__cdecl__)) on_exit (void (*__func)(int, void *),void * __arg); void __attribute__((__cdecl__)) _Exit (int __status) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) putenv (char *__string); int __attribute__((__cdecl__)) _putenv_r (struct _reent *, char *__string); void * __attribute__((__cdecl__)) _reallocf_r (struct _reent *, void *, size_t); int __attribute__((__cdecl__)) setenv (const char *__string, const char *__value, int __overwrite); int __attribute__((__cdecl__)) _setenv_r (struct _reent *, const char *__string, const char *__value, int __overwrite); char * __attribute__((__cdecl__)) gcvt (double,int,char *); char * __attribute__((__cdecl__)) gcvtf (float,int,char *); char * __attribute__((__cdecl__)) fcvt (double,int,int *,int *); char * __attribute__((__cdecl__)) fcvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) ecvt (double,int,int *,int *); char * __attribute__((__cdecl__)) ecvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) fcvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) ecvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) dtoa (double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) rand_r (unsigned *__seed); double __attribute__((__cdecl__)) drand48 (void); double __attribute__((__cdecl__)) _drand48_r (struct _reent *); double __attribute__((__cdecl__)) erand48 (unsigned short [3]); double __attribute__((__cdecl__)) _erand48_r (struct _reent *, unsigned short [3]); long __attribute__((__cdecl__)) jrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _jrand48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) lcong48 (unsigned short [7]); void __attribute__((__cdecl__)) _lcong48_r (struct _reent *, unsigned short [7]); long __attribute__((__cdecl__)) lrand48 (void); long __attribute__((__cdecl__)) _lrand48_r (struct _reent *); long __attribute__((__cdecl__)) mrand48 (void); long __attribute__((__cdecl__)) _mrand48_r (struct _reent *); long __attribute__((__cdecl__)) nrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _nrand48_r (struct _reent *, unsigned short [3]); unsigned short * __attribute__((__cdecl__)) seed48 (unsigned short [3]); unsigned short * __attribute__((__cdecl__)) _seed48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) srand48 (long); void __attribute__((__cdecl__)) _srand48_r (struct _reent *, long); long long __attribute__((__cdecl__)) atoll (const char *__nptr); long long __attribute__((__cdecl__)) _atoll_r (struct _reent *, const char *__nptr); long long __attribute__((__cdecl__)) llabs (long long); lldiv_t __attribute__((__cdecl__)) lldiv (long long __numer, long long __denom); long long __attribute__((__cdecl__)) strtoll (const char *__restrict __n, char **__restrict __end_PTR, int __base); long long __attribute__((__cdecl__)) _strtoll_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); # 221 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); extern long double strtold (const char *__restrict, char **__restrict); # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:593) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:593) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/MSMPI/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/nvcc...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA Executing: nvcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 32512 stderr: nvcc fatal : nvcc cannot find a supported cl version. Only MSVC 8.0 and MSVC 9.0 are supported Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/MSMPI/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/nvcc...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA Executing: nvcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 32512 stderr: nvcc fatal : nvcc cannot find a supported cl version. Only MSVC 8.0 and MSVC 9.0 are supported Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:631) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:631) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:743) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:743) Locate a functional Cxx compiler Checking for program /usr/local/bin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:781) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:781) Locate a functional Cxx preprocessor Checking for program /usr/local/bin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx Executing: g++ -E -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" 2 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 1 3 # 39 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 # 40 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 1 3 # 184 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 426 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 3 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/os_defines.h" 1 3 # 427 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 2 3 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/cpu_defines.h" 1 3 # 430 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 2 3 # 42 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 2 3 # 72 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 25 "/usr/include/sys/features.h" 3 4 extern "C" { # 227 "/usr/include/sys/features.h" 3 4 } # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 18 "/usr/include/cygwin/config.h" 3 4 extern "C" { # 100 "/usr/include/cygwin/config.h" 3 4 } # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 12 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 17 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 9 "/usr/include/sys/reent.h" 3 4 extern "C" { # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 23 "/usr/include/machine/_default_types.h" 3 4 extern "C" { typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 217 "/usr/include/machine/_default_types.h" 3 4 } # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 41 "/usr/include/sys/lock.h" 3 4 extern "C" { void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); } # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 788 "/usr/include/sys/reent.h" 3 4 } # 19 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/machine/stdlib.h" 1 3 4 # 14 "/usr/include/machine/stdlib.h" 3 4 extern "C" { char *mkdtemp (char *); } # 20 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 22 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/cygwin/stdlib.h" 1 3 4 # 14 "/usr/include/cygwin/stdlib.h" 3 4 # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 15 "/usr/include/cygwin/stdlib.h" 2 3 4 extern "C" { __uint32_t arc4random(void); void arc4random_addrandom(unsigned char *, int); void arc4random_buf(void *, size_t); void arc4random_stir(void); __uint32_t arc4random_uniform(__uint32_t); const char *getprogname (void); void setprogname (const char *); char *canonicalize_file_name (const char *); int unsetenv (const char *); char *initstate (unsigned seed, char *state, size_t size); long random (void); char *setstate (const char *state); void srandom (unsigned); char *ptsname (int); int ptsname_r(int, char *, size_t); int getpt (void); int grantpt (int); int unlockpt (int); int posix_openpt (int); int posix_memalign (void **, size_t, size_t); extern void * memalign (size_t, size_t); extern void * valloc (size_t); # 89 "/usr/include/cygwin/stdlib.h" 3 4 } # 26 "/usr/include/stdlib.h" 2 3 4 extern "C" { typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; typedef int (*__compar_fn_t) (const void *, const void *); int __attribute__((__cdecl__)) __locale_mb_cur_max (void); void __attribute__((__cdecl__)) abort (void) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) abs (int); int __attribute__((__cdecl__)) atexit (void (*__func)(void)); double __attribute__((__cdecl__)) atof (const char *__nptr); float __attribute__((__cdecl__)) atoff (const char *__nptr); int __attribute__((__cdecl__)) atoi (const char *__nptr); int __attribute__((__cdecl__)) _atoi_r (struct _reent *, const char *__nptr); long __attribute__((__cdecl__)) atol (const char *__nptr); long __attribute__((__cdecl__)) _atol_r (struct _reent *, const char *__nptr); void * __attribute__((__cdecl__)) bsearch (const void * __key, const void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar) ; void * __attribute__((__cdecl__)) calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)); div_t __attribute__((__cdecl__)) div (int __numer, int __denom); void __attribute__((__cdecl__)) exit (int __status) __attribute__ ((__noreturn__)); void __attribute__((__cdecl__)) free (void *) __attribute__ ((__nothrow__)); char * __attribute__((__cdecl__)) getenv (const char *__string); char * __attribute__((__cdecl__)) _getenv_r (struct _reent *, const char *__string); char * __attribute__((__cdecl__)) _findenv (const char *, int *); char * __attribute__((__cdecl__)) _findenv_r (struct _reent *, const char *, int *); extern char *suboptarg; int __attribute__((__cdecl__)) getsubopt (char **, char * const *, char **); long __attribute__((__cdecl__)) labs (long); ldiv_t __attribute__((__cdecl__)) ldiv (long __numer, long __denom); void * __attribute__((__cdecl__)) malloc (size_t __size) __attribute__ ((__nothrow__)); int __attribute__((__cdecl__)) mblen (const char *, size_t); int __attribute__((__cdecl__)) _mblen_r (struct _reent *, const char *, size_t, _mbstate_t *); int __attribute__((__cdecl__)) mbtowc (wchar_t *__restrict, const char *__restrict, size_t); int __attribute__((__cdecl__)) _mbtowc_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); int __attribute__((__cdecl__)) wctomb (char *, wchar_t); int __attribute__((__cdecl__)) _wctomb_r (struct _reent *, char *, wchar_t, _mbstate_t *); size_t __attribute__((__cdecl__)) mbstowcs (wchar_t *__restrict, const char *__restrict, size_t); size_t __attribute__((__cdecl__)) _mbstowcs_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); size_t __attribute__((__cdecl__)) wcstombs (char *__restrict, const wchar_t *__restrict, size_t); size_t __attribute__((__cdecl__)) _wcstombs_r (struct _reent *, char *__restrict, const wchar_t *__restrict, size_t, _mbstate_t *); char * __attribute__((__cdecl__)) mkdtemp (char *); int __attribute__((__cdecl__)) mkostemp (char *, int); int __attribute__((__cdecl__)) mkostemps (char *, int, int); int __attribute__((__cdecl__)) mkstemp (char *); int __attribute__((__cdecl__)) mkstemps (char *, int); char * __attribute__((__cdecl__)) mktemp (char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); char * __attribute__((__cdecl__)) _mkdtemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkostemp_r (struct _reent *, char *, int); int __attribute__((__cdecl__)) _mkostemps_r (struct _reent *, char *, int, int); int __attribute__((__cdecl__)) _mkstemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkstemps_r (struct _reent *, char *, int); char * __attribute__((__cdecl__)) _mktemp_r (struct _reent *, char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); void __attribute__((__cdecl__)) qsort (void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar); int __attribute__((__cdecl__)) rand (void); void * __attribute__((__cdecl__)) realloc (void * __r, size_t __size) __attribute__ ((__nothrow__)); void * __attribute__((__cdecl__)) reallocf (void * __r, size_t __size); char * __attribute__((__cdecl__)) realpath (const char *__restrict path, char *__restrict resolved_path); void __attribute__((__cdecl__)) srand (unsigned __seed); double __attribute__((__cdecl__)) strtod (const char *__restrict __n, char **__restrict __end_PTR); double __attribute__((__cdecl__)) _strtod_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR); float __attribute__((__cdecl__)) strtof (const char *__restrict __n, char **__restrict __end_PTR); long __attribute__((__cdecl__)) strtol (const char *__restrict __n, char **__restrict __end_PTR, int __base); long __attribute__((__cdecl__)) _strtol_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) strtoul (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) _strtoul_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); int __attribute__((__cdecl__)) system (const char *__string); long __attribute__((__cdecl__)) a64l (const char *__input); char * __attribute__((__cdecl__)) l64a (long __input); char * __attribute__((__cdecl__)) _l64a_r (struct _reent *,long __input); int __attribute__((__cdecl__)) on_exit (void (*__func)(int, void *),void * __arg); void __attribute__((__cdecl__)) _Exit (int __status) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) putenv (char *__string); int __attribute__((__cdecl__)) _putenv_r (struct _reent *, char *__string); void * __attribute__((__cdecl__)) _reallocf_r (struct _reent *, void *, size_t); int __attribute__((__cdecl__)) setenv (const char *__string, const char *__value, int __overwrite); int __attribute__((__cdecl__)) _setenv_r (struct _reent *, const char *__string, const char *__value, int __overwrite); char * __attribute__((__cdecl__)) gcvt (double,int,char *); char * __attribute__((__cdecl__)) gcvtf (float,int,char *); char * __attribute__((__cdecl__)) fcvt (double,int,int *,int *); char * __attribute__((__cdecl__)) fcvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) ecvt (double,int,int *,int *); char * __attribute__((__cdecl__)) ecvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) fcvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) ecvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) dtoa (double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) rand_r (unsigned *__seed); double __attribute__((__cdecl__)) drand48 (void); double __attribute__((__cdecl__)) _drand48_r (struct _reent *); double __attribute__((__cdecl__)) erand48 (unsigned short [3]); double __attribute__((__cdecl__)) _erand48_r (struct _reent *, unsigned short [3]); long __attribute__((__cdecl__)) jrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _jrand48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) lcong48 (unsigned short [7]); void __attribute__((__cdecl__)) _lcong48_r (struct _reent *, unsigned short [7]); long __attribute__((__cdecl__)) lrand48 (void); long __attribute__((__cdecl__)) _lrand48_r (struct _reent *); long __attribute__((__cdecl__)) mrand48 (void); long __attribute__((__cdecl__)) _mrand48_r (struct _reent *); long __attribute__((__cdecl__)) nrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _nrand48_r (struct _reent *, unsigned short [3]); unsigned short * __attribute__((__cdecl__)) seed48 (unsigned short [3]); unsigned short * __attribute__((__cdecl__)) _seed48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) srand48 (long); void __attribute__((__cdecl__)) _srand48_r (struct _reent *, long); long long __attribute__((__cdecl__)) atoll (const char *__nptr); long long __attribute__((__cdecl__)) _atoll_r (struct _reent *, const char *__nptr); long long __attribute__((__cdecl__)) llabs (long long); lldiv_t __attribute__((__cdecl__)) lldiv (long long __numer, long long __denom); long long __attribute__((__cdecl__)) strtoll (const char *__restrict __n, char **__restrict __end_PTR, int __base); long long __attribute__((__cdecl__)) _strtoll_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); # 221 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); extern long double strtold (const char *__restrict, char **__restrict); } # 73 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 2 3 # 114 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 namespace std { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:898) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:898) Locate a functional Fortran compiler ================================================================================ TEST checkPIC from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:980) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:980) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -fPIC /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid C linker flag -fPIC Adding C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -fPIC /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default] #include "confdefs.h" ^ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default] #include "confdefs.h" ^ Rejected C compiler flag -fPIC Popping language C Pushing language Cxx Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -fPIC /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -fPIC /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default] #include "confdefs.h" ^ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -fPIC due to /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:1:0: warning: -fPIC ignored for target (all code is position independent) [enabled by default] #include "confdefs.h" ^ Rejected Cxx compiler flag -fPIC Popping language Cxx ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1013) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1013) ================================================================================ TEST checkArchiver from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1112) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1112) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a /tmp/petsc-DZOa4u/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a /tmp/petsc-DZOa4u/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/tmp/petsc-DZOa4u/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1223) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1223) Check that the linker can produce shared libraries Executing: uname -s stdout: CYGWIN_NT-6.1 Checking shared linker gcc using flags ['-shared'] Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.so -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/tmp/petsc-DZOa4u/config.setCompilers -lconftest Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lconftest collect2: error: ld returned 1 exit status Deleting "LD_SHARED" Checking shared linker gcc using flags ['-dynamic'] Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -dynamic /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid C linker flag -dynamic Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.so -dynamic /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/libcygwin.a(libcmain.o): In function `main': /usr/src/debug/cygwin-1.7.32-1/winsup/cygwin/lib/libcmain.c:39: undefined reference to `WinMain' /usr/src/debug/cygwin-1.7.32-1/winsup/cygwin/lib/libcmain.c:39:(.text.startup+0x7e): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `WinMain' collect2: error: ld returned 1 exit status Deleting "LD_SHARED" Checking shared linker gcc using flags ['-qmkshrobj'] Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -qmkshrobj /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: gcc: error: unrecognized command line option ‘-qmkshrobj’ Rejecting linker flag -qmkshrobj due to nonzero status from link Rejecting C linker flag -qmkshrobj due to gcc: error: unrecognized command line option ‘-qmkshrobj’ Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.so /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/libcygwin.a(libcmain.o): In function `main': /usr/src/debug/cygwin-1.7.32-1/winsup/cygwin/lib/libcmain.c:39: undefined reference to `WinMain' /usr/src/debug/cygwin-1.7.32-1/winsup/cygwin/lib/libcmain.c:39:(.text.startup+0x7e): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `WinMain' collect2: error: ld returned 1 exit status Deleting "LD_SHARED" Checking shared linker gcc using flags ['-shared'] Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.dll -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/tmp/petsc-DZOa4u/config.setCompilers -lconftest Using shared linker gcc with flags ['-shared'] and library extension dll Executing: uname -s stdout: CYGWIN_NT-6.1 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1301) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1301) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1 Executing: gcc -V Trying C linker flag -Wl,-rpath, Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -Wl,-rpath,/home/semih/petsc /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/semih/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1 Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -Wl,-rpath,/home/semih/petsc /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/semih/petsc Popping language Cxx ================================================================================ TEST checkLibC from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1336) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1336) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.dll -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1385) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1385) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-DZOa4u/config.headers Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-DZOa4u/config.libraries Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe /tmp/petsc-DZOa4u/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: CYGWIN_NT-6.1 Checking dynamic linker gcc using flags ['-shared'] Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.so -shared /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -ldl Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Could not load symbol\n"); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Invalid return from foo()\n"); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-DZOa4u/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -ldl Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1431) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1431) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Executing: uname -s stdout: CYGWIN_NT-6.1 ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/home/semih/petsc/config/PETSc/utilities/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/semih/petsc/config/PETSc/utilities/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/semih/petsc/config/PETSc/utilities/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.utilities.sharedLibraries(/home/semih/petsc/config/PETSc/utilities/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/semih/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Pushing language C Executing: gcc --version stdout: gcc (GCC) 4.8.3 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc gcc (GCC) 4.8.3 Trying C compiler flag -Wall Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -Wall /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Trying C compiler flag -g3 Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Trying C compiler flag -O0 Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O0 Popping language C Pushing language Cxx Executing: g++ --version stdout: g++ (GCC) 4.8.3 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (GCC) 4.8.3 Trying Cxx compiler flag -Wall Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -g Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Trying Cxx compiler flag -O0 Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O0 Popping language Cxx ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/semih/petsc/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:136) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:136) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /tmp/petsc-DZOa4u/config.compilers Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ float * restrict x;; ^ /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:309) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:309) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:107) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:107) Check for C keyword: static inline Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:320) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:320) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:163) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:163) Determines the libraries needed to link with C Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.8.3 (GCC) COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-DZOa4u/config.compilers/conftest.exe' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g3' '-O0' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe --build-id -m i386pep --wrap _Znwm --wrap _Znam --wrap _ZdlPv --wrap _ZdaPv --wrap _ZnwmRKSt9nothrow_t --wrap _ZnamRKSt9nothrow_t --wrap _ZdlPvRKSt9nothrow_t --wrap _ZdaPvRKSt9nothrow_t -Bdynamic --dll-search-prefix=cyg --tsaware -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../.. /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl -lgcc_s -lgcc -lcygwin -ladvapi32 -lshell32 -luser32 -lkernel32 -lgcc_s -lgcc /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-pc-cygwin compilers: Unknown arg x86_64-pc-cygwin compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure compilers: Unknown arg /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure compilers: Checking arg --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 compilers: Unknown arg --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --bindir=/usr/bin compilers: Unknown arg --bindir=/usr/bin compilers: Checking arg --sbindir=/usr/sbin compilers: Unknown arg --sbindir=/usr/sbin compilers: Checking arg --libexecdir=/usr/libexec compilers: Unknown arg --libexecdir=/usr/libexec compilers: Checking arg --datadir=/usr/share compilers: Unknown arg --datadir=/usr/share compilers: Checking arg --localstatedir=/var compilers: Unknown arg --localstatedir=/var compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --datarootdir=/usr/share compilers: Unknown arg --datarootdir=/usr/share compilers: Checking arg --docdir=/usr/share/doc/gcc compilers: Unknown arg --docdir=/usr/share/doc/gcc compilers: Checking arg --htmldir=/usr/share/doc/gcc/html compilers: Unknown arg --htmldir=/usr/share/doc/gcc/html compilers: Checking arg -C compilers: Unknown arg -C compilers: Checking arg --build=x86_64-pc-cygwin compilers: Unknown arg --build=x86_64-pc-cygwin compilers: Checking arg --host=x86_64-pc-cygwin compilers: Unknown arg --host=x86_64-pc-cygwin compilers: Checking arg --target=x86_64-pc-cygwin compilers: Unknown arg --target=x86_64-pc-cygwin compilers: Checking arg --without-libiconv-prefix compilers: Unknown arg --without-libiconv-prefix compilers: Checking arg --without-libintl-prefix compilers: Unknown arg --without-libintl-prefix compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-shared-libgcc compilers: Unknown arg --enable-shared-libgcc compilers: Checking arg --enable-static compilers: Unknown arg --enable-static compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --enable-bootstrap compilers: Unknown arg --enable-bootstrap compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --with-dwarf2 compilers: Unknown arg --with-dwarf2 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ compilers: Unknown arg --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ compilers: Checking arg --enable-graphite compilers: Unknown arg --enable-graphite compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-libatomic compilers: Unknown arg --enable-libatomic compilers: Checking arg --enable-libgomp compilers: Unknown arg --enable-libgomp compilers: Checking arg --disable-libitm compilers: Unknown arg --disable-libitm compilers: Checking arg --enable-libquadmath compilers: Unknown arg --enable-libquadmath compilers: Checking arg --enable-libquadmath-support compilers: Unknown arg --enable-libquadmath-support compilers: Checking arg --enable-libssp compilers: Unknown arg --enable-libssp compilers: Checking arg --enable-libada compilers: Unknown arg --enable-libada compilers: Checking arg --enable-libgcj-sublibs compilers: Unknown arg --enable-libgcj-sublibs compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --disable-symvers compilers: Unknown arg --disable-symvers compilers: Checking arg --with-ecj-jar=/usr/share/java/ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/ecj.jar compilers: Checking arg --with-gnu-ld compilers: Unknown arg --with-gnu-ld compilers: Checking arg --with-gnu-as compilers: Unknown arg --with-gnu-as compilers: Checking arg --with-cloog-include=/usr/include/cloog-isl compilers: Unknown arg --with-cloog-include=/usr/include/cloog-isl compilers: Checking arg --without-libiconv-prefix compilers: Unknown arg --without-libiconv-prefix compilers: Checking arg --without-libintl-prefix compilers: Unknown arg --without-libintl-prefix compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.3 compilers: Unknown arg 4.8.3 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg i386pep compilers: Unknown arg i386pep compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _Znwm compilers: Unknown arg _Znwm compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _Znam compilers: Unknown arg _Znam compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdlPv compilers: Unknown arg _ZdlPv compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdaPv compilers: Unknown arg _ZdaPv compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZnwmRKSt9nothrow_t compilers: Unknown arg _ZnwmRKSt9nothrow_t compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZnamRKSt9nothrow_t compilers: Unknown arg _ZnamRKSt9nothrow_t compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdlPvRKSt9nothrow_t compilers: Unknown arg _ZdlPvRKSt9nothrow_t compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdaPvRKSt9nothrow_t compilers: Unknown arg _ZdaPvRKSt9nothrow_t compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg --tsaware compilers: Unknown arg --tsaware compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-DZOa4u/config.compilers/conftest.exe compilers: Unknown arg /tmp/petsc-DZOa4u/config.compilers/conftest.exe compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 compilers: Found library directory: -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib compilers: Found library directory: -L/usr/x86_64-pc-cygwin/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib compilers: Found library directory: -L/usr/x86_64-pc-cygwin/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../.. compilers: Checking arg /tmp/petsc-DZOa4u/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-DZOa4u/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lcygwin compilers: Skipping system library: -lcygwin compilers: Checking arg -ladvapi32 compilers: Found library : -ladvapi32 compilers: Checking arg -lshell32 compilers: Found library : -lshell32 compilers: Checking arg -luser32 compilers: Found library : -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3', '-L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3', '-Wl,-rpath,/usr/x86_64-pc-cygwin/lib', '-L/usr/x86_64-pc-cygwin/lib', '-Wl,-rpath,/usr/x86_64-pc-cygwin/lib', '-L/usr/x86_64-pc-cygwin/lib', '-ldl', '-lgcc_s', '-ladvapi32', '-lshell32', '-luser32'] compilers: Check that C libraries can be used from Fortran ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:1327) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1327) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -MMD -MP /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -MMD -MP /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx ================================================================================ TEST checkRestrict from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:136) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:136) Check for the C/CXX restrict keyword Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: g++ -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.compilers/conftest.cc:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:358) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:358) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:333) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:333) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:121) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:121) Check for C++ keyword: static inline Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:412) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:412) Determines the libraries needed to link with C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.compilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.8.3 (GCC) COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-DZOa4u/config.compilers/conftest.exe' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g' '-O0' '-L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3' '-L/usr/x86_64-pc-cygwin/lib' '-L/usr/x86_64-pc-cygwin/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe --build-id -m i386pep --wrap _Znwm --wrap _Znam --wrap _ZdlPv --wrap _ZdaPv --wrap _ZnwmRKSt9nothrow_t --wrap _ZnamRKSt9nothrow_t --wrap _ZdlPvRKSt9nothrow_t --wrap _ZdaPvRKSt9nothrow_t -Bdynamic --dll-search-prefix=cyg --tsaware -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../.. /tmp/petsc-DZOa4u/config.compilers/conftest.o -rpath /usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -rpath /usr/x86_64-pc-cygwin/lib -rpath /usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl -lstdc++ -lgcc_s -lgcc -lcygwin -ladvapi32 -lshell32 -luser32 -lkernel32 -lgcc_s -lgcc /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-pc-cygwin compilers: Unknown arg x86_64-pc-cygwin compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure compilers: Unknown arg /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure compilers: Checking arg --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 compilers: Unknown arg --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --exec-prefix=/usr compilers: Unknown arg --exec-prefix=/usr compilers: Checking arg --bindir=/usr/bin compilers: Unknown arg --bindir=/usr/bin compilers: Checking arg --sbindir=/usr/sbin compilers: Unknown arg --sbindir=/usr/sbin compilers: Checking arg --libexecdir=/usr/libexec compilers: Unknown arg --libexecdir=/usr/libexec compilers: Checking arg --datadir=/usr/share compilers: Unknown arg --datadir=/usr/share compilers: Checking arg --localstatedir=/var compilers: Unknown arg --localstatedir=/var compilers: Checking arg --sysconfdir=/etc compilers: Unknown arg --sysconfdir=/etc compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --datarootdir=/usr/share compilers: Unknown arg --datarootdir=/usr/share compilers: Checking arg --docdir=/usr/share/doc/gcc compilers: Unknown arg --docdir=/usr/share/doc/gcc compilers: Checking arg --htmldir=/usr/share/doc/gcc/html compilers: Unknown arg --htmldir=/usr/share/doc/gcc/html compilers: Checking arg -C compilers: Unknown arg -C compilers: Checking arg --build=x86_64-pc-cygwin compilers: Unknown arg --build=x86_64-pc-cygwin compilers: Checking arg --host=x86_64-pc-cygwin compilers: Unknown arg --host=x86_64-pc-cygwin compilers: Checking arg --target=x86_64-pc-cygwin compilers: Unknown arg --target=x86_64-pc-cygwin compilers: Checking arg --without-libiconv-prefix compilers: Unknown arg --without-libiconv-prefix compilers: Checking arg --without-libintl-prefix compilers: Unknown arg --without-libintl-prefix compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-shared-libgcc compilers: Unknown arg --enable-shared-libgcc compilers: Checking arg --enable-static compilers: Unknown arg --enable-static compilers: Checking arg --enable-version-specific-runtime-libs compilers: Unknown arg --enable-version-specific-runtime-libs compilers: Checking arg --enable-bootstrap compilers: Unknown arg --enable-bootstrap compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg --with-dwarf2 compilers: Unknown arg --with-dwarf2 compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ compilers: Unknown arg --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ compilers: Checking arg --enable-graphite compilers: Unknown arg --enable-graphite compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-libatomic compilers: Unknown arg --enable-libatomic compilers: Checking arg --enable-libgomp compilers: Unknown arg --enable-libgomp compilers: Checking arg --disable-libitm compilers: Unknown arg --disable-libitm compilers: Checking arg --enable-libquadmath compilers: Unknown arg --enable-libquadmath compilers: Checking arg --enable-libquadmath-support compilers: Unknown arg --enable-libquadmath-support compilers: Checking arg --enable-libssp compilers: Unknown arg --enable-libssp compilers: Checking arg --enable-libada compilers: Unknown arg --enable-libada compilers: Checking arg --enable-libgcj-sublibs compilers: Unknown arg --enable-libgcj-sublibs compilers: Checking arg --disable-java-awt compilers: Unknown arg --disable-java-awt compilers: Checking arg --disable-symvers compilers: Unknown arg --disable-symvers compilers: Checking arg --with-ecj-jar=/usr/share/java/ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/ecj.jar compilers: Checking arg --with-gnu-ld compilers: Unknown arg --with-gnu-ld compilers: Checking arg --with-gnu-as compilers: Unknown arg --with-gnu-as compilers: Checking arg --with-cloog-include=/usr/include/cloog-isl compilers: Unknown arg --with-cloog-include=/usr/include/cloog-isl compilers: Checking arg --without-libiconv-prefix compilers: Unknown arg --without-libiconv-prefix compilers: Checking arg --without-libintl-prefix compilers: Unknown arg --without-libintl-prefix compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.3 compilers: Unknown arg 4.8.3 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg i386pep compilers: Unknown arg i386pep compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _Znwm compilers: Unknown arg _Znwm compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _Znam compilers: Unknown arg _Znam compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdlPv compilers: Unknown arg _ZdlPv compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdaPv compilers: Unknown arg _ZdaPv compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZnwmRKSt9nothrow_t compilers: Unknown arg _ZnwmRKSt9nothrow_t compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZnamRKSt9nothrow_t compilers: Unknown arg _ZnamRKSt9nothrow_t compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdlPvRKSt9nothrow_t compilers: Unknown arg _ZdlPvRKSt9nothrow_t compilers: Checking arg --wrap compilers: Unknown arg --wrap compilers: Checking arg _ZdaPvRKSt9nothrow_t compilers: Unknown arg _ZdaPvRKSt9nothrow_t compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg --dll-search-prefix=cyg compilers: Unknown arg --dll-search-prefix=cyg compilers: Checking arg --tsaware compilers: Unknown arg --tsaware compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-DZOa4u/config.compilers/conftest.exe compilers: Unknown arg /tmp/petsc-DZOa4u/config.compilers/conftest.exe compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 compilers: Found library directory: -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 compilers: Checking arg -L/usr/x86_64-pc-cygwin/lib compilers: Found library directory: -L/usr/x86_64-pc-cygwin/lib compilers: Checking arg -L/usr/x86_64-pc-cygwin/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib compilers: Checking arg -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../.. compilers: Checking arg /tmp/petsc-DZOa4u/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-DZOa4u/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/x86_64-pc-cygwin/lib compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ladvapi32 compilers: Found library: -ladvapi32 Library already in C list so skipping in C++ compilers: Checking arg -lshell32 compilers: Found library: -lshell32 Library already in C list so skipping in C++ compilers: Checking arg -luser32 compilers: Found library: -luser32 Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lcygwin compilers: Skipping system library: -lcygwin compilers: Checking arg -ladvapi32 compilers: Checking arg -lshell32 compilers: Checking arg -luser32 compilers: Checking arg -lkernel32 compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o compilers: Checking arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3', '-L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3', '-Wl,-rpath,/usr/x86_64-pc-cygwin/lib', '-L/usr/x86_64-pc-cygwin/lib', '-Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3', '-Wl,-rpath,/usr/x86_64-pc-cygwin/lib', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: gcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -lstdc++ -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCxx11 from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:373) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:373) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/random:35:0, from /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/random:35:0, from /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/semih/petsc/config/BuildSystem/config/compilers.py:1413) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1413) ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/semih/petsc/config/PETSc/utilities/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".F.o" with dependencies "" and code ['-@echo "Your system was not configured for Fortran use"', '-@echo " Check configure.log under the checkFortranCompiler test for the specific failure"', '-@echo " You can reconfigure using --with-fc= to enable Fortran"'] ================================================================================ TEST checkStdC from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: gcc -c -o /tmp/petsc-DZOa4u/config.headers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 11 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 13 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 18 "/usr/include/string.h" 2 3 4 void * __attribute__((__cdecl__)) memchr (const void *, int, size_t); int __attribute__((__cdecl__)) memcmp (const void *, const void *, size_t); void * __attribute__((__cdecl__)) memcpy (void * , const void * , size_t); void * __attribute__((__cdecl__)) memmove (void *, const void *, size_t); void * __attribute__((__cdecl__)) memset (void *, int, size_t); char *__attribute__((__cdecl__)) strcat (char *, const char *); char *__attribute__((__cdecl__)) strchr (const char *, int); int __attribute__((__cdecl__)) strcmp (const char *, const char *); int __attribute__((__cdecl__)) strcoll (const char *, const char *); char *__attribute__((__cdecl__)) strcpy (char *, const char *); size_t __attribute__((__cdecl__)) strcspn (const char *, const char *); char *__attribute__((__cdecl__)) strerror (int); size_t __attribute__((__cdecl__)) strlen (const char *); char *__attribute__((__cdecl__)) strncat (char *, const char *, size_t); int __attribute__((__cdecl__)) strncmp (const char *, const char *, size_t); char *__attribute__((__cdecl__)) strncpy (char *, const char *, size_t); char *__attribute__((__cdecl__)) strpbrk (const char *, const char *); char *__attribute__((__cdecl__)) strrchr (const char *, int); size_t __attribute__((__cdecl__)) strspn (const char *, const char *); char *__attribute__((__cdecl__)) strstr (const char *, const char *); char *__attribute__((__cdecl__)) strtok (char *, const char *); size_t __attribute__((__cdecl__)) strxfrm (char *, const char *, size_t); char *__attribute__((__cdecl__)) strtok_r (char *, const char *, char **); int __attribute__((__cdecl__)) bcmp (const void *, const void *, size_t); void __attribute__((__cdecl__)) bcopy (const void *, void *, size_t); void __attribute__((__cdecl__)) bzero (void *, size_t); int __attribute__((__cdecl__)) ffs (int); char *__attribute__((__cdecl__)) index (const char *, int); void * __attribute__((__cdecl__)) memccpy (void * , const void * , int, size_t); void * __attribute__((__cdecl__)) mempcpy (void *, const void *, size_t); void * __attribute__((__cdecl__)) memmem (const void *, size_t, const void *, size_t); void * __attribute__((__cdecl__)) memrchr (const void *, int, size_t); void * __attribute__((__cdecl__)) rawmemchr (const void *, int); char *__attribute__((__cdecl__)) rindex (const char *, int); char *__attribute__((__cdecl__)) stpcpy (char *, const char *); char *__attribute__((__cdecl__)) stpncpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strcasecmp (const char *, const char *); char *__attribute__((__cdecl__)) strcasestr (const char *, const char *); char *__attribute__((__cdecl__)) strchrnul (const char *, int); char *__attribute__((__cdecl__)) strdup (const char *); char *__attribute__((__cdecl__)) _strdup_r (struct _reent *, const char *); char *__attribute__((__cdecl__)) strndup (const char *, size_t); char *__attribute__((__cdecl__)) _strndup_r (struct _reent *, const char *, size_t); # 87 "/usr/include/string.h" 3 4 int __attribute__((__cdecl__)) strerror_r (int, char *, size_t) __asm__ ("" "__xpg_strerror_r"); size_t __attribute__((__cdecl__)) strlcat (char *, const char *, size_t); size_t __attribute__((__cdecl__)) strlcpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); char * __attribute__((__cdecl__)) _strerror_r (struct _reent *, int, int, int *); # 140 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 141 "/usr/include/string.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 12 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 17 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 19 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/machine/stdlib.h" 1 3 4 # 17 "/usr/include/machine/stdlib.h" 3 4 char *mkdtemp (char *); # 20 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 22 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/cygwin/stdlib.h" 1 3 4 # 14 "/usr/include/cygwin/stdlib.h" 3 4 # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 15 "/usr/include/cygwin/stdlib.h" 2 3 4 __uint32_t arc4random(void); void arc4random_addrandom(unsigned char *, int); void arc4random_buf(void *, size_t); void arc4random_stir(void); __uint32_t arc4random_uniform(__uint32_t); const char *getprogname (void); void setprogname (const char *); char *canonicalize_file_name (const char *); int unsetenv (const char *); char *initstate (unsigned seed, char *state, size_t size); long random (void); char *setstate (const char *state); void srandom (unsigned); char *ptsname (int); int ptsname_r(int, char *, size_t); int getpt (void); int grantpt (int); int unlockpt (int); int posix_openpt (int); int posix_memalign (void **, size_t, size_t); extern void * memalign (size_t, size_t); extern void * valloc (size_t); # 26 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; typedef int (*__compar_fn_t) (const void *, const void *); int __attribute__((__cdecl__)) __locale_mb_cur_max (void); void __attribute__((__cdecl__)) abort (void) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) abs (int); int __attribute__((__cdecl__)) atexit (void (*__func)(void)); double __attribute__((__cdecl__)) atof (const char *__nptr); float __attribute__((__cdecl__)) atoff (const char *__nptr); int __attribute__((__cdecl__)) atoi (const char *__nptr); int __attribute__((__cdecl__)) _atoi_r (struct _reent *, const char *__nptr); long __attribute__((__cdecl__)) atol (const char *__nptr); long __attribute__((__cdecl__)) _atol_r (struct _reent *, const char *__nptr); void * __attribute__((__cdecl__)) bsearch (const void * __key, const void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar) ; void * __attribute__((__cdecl__)) calloc (size_t __nmemb, size_t __size) ; div_t __attribute__((__cdecl__)) div (int __numer, int __denom); void __attribute__((__cdecl__)) exit (int __status) __attribute__ ((__noreturn__)); void __attribute__((__cdecl__)) free (void *) ; char * __attribute__((__cdecl__)) getenv (const char *__string); char * __attribute__((__cdecl__)) _getenv_r (struct _reent *, const char *__string); char * __attribute__((__cdecl__)) _findenv (const char *, int *); char * __attribute__((__cdecl__)) _findenv_r (struct _reent *, const char *, int *); extern char *suboptarg; int __attribute__((__cdecl__)) getsubopt (char **, char * const *, char **); long __attribute__((__cdecl__)) labs (long); ldiv_t __attribute__((__cdecl__)) ldiv (long __numer, long __denom); void * __attribute__((__cdecl__)) malloc (size_t __size) ; int __attribute__((__cdecl__)) mblen (const char *, size_t); int __attribute__((__cdecl__)) _mblen_r (struct _reent *, const char *, size_t, _mbstate_t *); int __attribute__((__cdecl__)) mbtowc (wchar_t *__restrict, const char *__restrict, size_t); int __attribute__((__cdecl__)) _mbtowc_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); int __attribute__((__cdecl__)) wctomb (char *, wchar_t); int __attribute__((__cdecl__)) _wctomb_r (struct _reent *, char *, wchar_t, _mbstate_t *); size_t __attribute__((__cdecl__)) mbstowcs (wchar_t *__restrict, const char *__restrict, size_t); size_t __attribute__((__cdecl__)) _mbstowcs_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); size_t __attribute__((__cdecl__)) wcstombs (char *__restrict, const wchar_t *__restrict, size_t); size_t __attribute__((__cdecl__)) _wcstombs_r (struct _reent *, char *__restrict, const wchar_t *__restrict, size_t, _mbstate_t *); char * __attribute__((__cdecl__)) mkdtemp (char *); int __attribute__((__cdecl__)) mkostemp (char *, int); int __attribute__((__cdecl__)) mkostemps (char *, int, int); int __attribute__((__cdecl__)) mkstemp (char *); int __attribute__((__cdecl__)) mkstemps (char *, int); char * __attribute__((__cdecl__)) mktemp (char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); char * __attribute__((__cdecl__)) _mkdtemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkostemp_r (struct _reent *, char *, int); int __attribute__((__cdecl__)) _mkostemps_r (struct _reent *, char *, int, int); int __attribute__((__cdecl__)) _mkstemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkstemps_r (struct _reent *, char *, int); char * __attribute__((__cdecl__)) _mktemp_r (struct _reent *, char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); void __attribute__((__cdecl__)) qsort (void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar); int __attribute__((__cdecl__)) rand (void); void * __attribute__((__cdecl__)) realloc (void * __r, size_t __size) ; void * __attribute__((__cdecl__)) reallocf (void * __r, size_t __size); char * __attribute__((__cdecl__)) realpath (const char *__restrict path, char *__restrict resolved_path); void __attribute__((__cdecl__)) srand (unsigned __seed); double __attribute__((__cdecl__)) strtod (const char *__restrict __n, char **__restrict __end_PTR); double __attribute__((__cdecl__)) _strtod_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR); float __attribute__((__cdecl__)) strtof (const char *__restrict __n, char **__restrict __end_PTR); long __attribute__((__cdecl__)) strtol (const char *__restrict __n, char **__restrict __end_PTR, int __base); long __attribute__((__cdecl__)) _strtol_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) strtoul (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) _strtoul_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); int __attribute__((__cdecl__)) system (const char *__string); long __attribute__((__cdecl__)) a64l (const char *__input); char * __attribute__((__cdecl__)) l64a (long __input); char * __attribute__((__cdecl__)) _l64a_r (struct _reent *,long __input); int __attribute__((__cdecl__)) on_exit (void (*__func)(int, void *),void * __arg); void __attribute__((__cdecl__)) _Exit (int __status) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) putenv (char *__string); int __attribute__((__cdecl__)) _putenv_r (struct _reent *, char *__string); void * __attribute__((__cdecl__)) _reallocf_r (struct _reent *, void *, size_t); int __attribute__((__cdecl__)) setenv (const char *__string, const char *__value, int __overwrite); int __attribute__((__cdecl__)) _setenv_r (struct _reent *, const char *__string, const char *__value, int __overwrite); char * __attribute__((__cdecl__)) gcvt (double,int,char *); char * __attribute__((__cdecl__)) gcvtf (float,int,char *); char * __attribute__((__cdecl__)) fcvt (double,int,int *,int *); char * __attribute__((__cdecl__)) fcvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) ecvt (double,int,int *,int *); char * __attribute__((__cdecl__)) ecvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) fcvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) ecvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) dtoa (double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) rand_r (unsigned *__seed); double __attribute__((__cdecl__)) drand48 (void); double __attribute__((__cdecl__)) _drand48_r (struct _reent *); double __attribute__((__cdecl__)) erand48 (unsigned short [3]); double __attribute__((__cdecl__)) _erand48_r (struct _reent *, unsigned short [3]); long __attribute__((__cdecl__)) jrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _jrand48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) lcong48 (unsigned short [7]); void __attribute__((__cdecl__)) _lcong48_r (struct _reent *, unsigned short [7]); long __attribute__((__cdecl__)) lrand48 (void); long __attribute__((__cdecl__)) _lrand48_r (struct _reent *); long __attribute__((__cdecl__)) mrand48 (void); long __attribute__((__cdecl__)) _mrand48_r (struct _reent *); long __attribute__((__cdecl__)) nrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _nrand48_r (struct _reent *, unsigned short [3]); unsigned short * __attribute__((__cdecl__)) seed48 (unsigned short [3]); unsigned short * __attribute__((__cdecl__)) _seed48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) srand48 (long); void __attribute__((__cdecl__)) _srand48_r (struct _reent *, long); long long __attribute__((__cdecl__)) atoll (const char *__nptr); long long __attribute__((__cdecl__)) _atoll_r (struct _reent *, const char *__nptr); long long __attribute__((__cdecl__)) llabs (long long); lldiv_t __attribute__((__cdecl__)) lldiv (long long __numer, long long __denom); long long __attribute__((__cdecl__)) strtoll (const char *__restrict __n, char **__restrict __end_PTR, int __base); long long __attribute__((__cdecl__)) _strtoll_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); # 221 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); extern long double strtold (const char *__restrict, char **__restrict); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Executing: gcc -c -o /tmp/petsc-DZOa4u/config.headers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.headers/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.headers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.headers/conftest.exe Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 5 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 4 # 9 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char *__restrict _s, size_t _maxsize, const char *__restrict _fmt, const struct tm *__restrict _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *__restrict, char *__restrict) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *__restrict, struct tm *__restrict) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *__restrict, struct tm *__restrict) ; char *__attribute__((__cdecl__)) strptime (const char *__restrict, const char *__restrict, struct tm *__restrict) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *__restrict evp, timer_t *__restrict timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *__restrict value, struct itimerspec *__restrict ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 10 "/usr/include/sys/stat.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 11 "/usr/include/sys/stat.h" 2 3 4 # 21 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/cygwin/stat.h" 1 3 4 # 19 "/usr/include/cygwin/stat.h" 3 4 struct stat { dev_t st_dev; ino_t st_ino; mode_t st_mode; nlink_t st_nlink; uid_t st_uid; gid_t st_gid; dev_t st_rdev; off_t st_size; timestruc_t st_atim; timestruc_t st_mtim; timestruc_t st_ctim; blksize_t st_blksize; blkcnt_t st_blocks; timestruc_t st_birthtim; }; # 22 "/usr/include/sys/stat.h" 2 3 4 # 146 "/usr/include/sys/stat.h" 3 4 int __attribute__((__cdecl__)) chmod ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) fchmod (int __fd, mode_t __mode); int __attribute__((__cdecl__)) fstat ( int __fd, struct stat *__sbuf ); int __attribute__((__cdecl__)) mkdir ( const char *_path, mode_t __mode ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char * __path, struct stat * __sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char * __path, struct stat * __buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); int __attribute__((__cdecl__)) fchmodat (int, const char *, mode_t, int); int __attribute__((__cdecl__)) fstatat (int, const char * , struct stat *, int); int __attribute__((__cdecl__)) mkdirat (int, const char *, mode_t); int __attribute__((__cdecl__)) mkfifoat (int, const char *, mode_t); int __attribute__((__cdecl__)) mknodat (int, const char *, mode_t, dev_t); int __attribute__((__cdecl__)) utimensat (int, const char *, const struct timespec *, int); int __attribute__((__cdecl__)) futimens (int, const struct timespec *); # 6 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: gcc -c -o /tmp/petsc-DZOa4u/config.headers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 69 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char *__restrict _s, size_t _maxsize, const char *__restrict _fmt, const struct tm *__restrict _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *__restrict, char *__restrict) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *__restrict, struct tm *__restrict) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *__restrict, struct tm *__restrict) ; char *__attribute__((__cdecl__)) strptime (const char *__restrict, const char *__restrict, struct tm *__restrict) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *__restrict evp, timer_t *__restrict timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *__restrict value, struct itimerspec *__restrict ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 10 "/usr/include/sys/time.h" 2 3 4 struct timeval { time_t tv_sec; suseconds_t tv_usec; }; # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 1 "/usr/include/cygwin/sys_time.h" 1 3 4 # 13 "/usr/include/cygwin/sys_time.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 17 "/usr/include/sys/select.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 18 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char * _s, size_t _maxsize, const char * _fmt, const struct tm * _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *, char *) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *, struct tm *) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *, struct tm *) ; char *__attribute__((__cdecl__)) strptime (const char *, const char *, struct tm *) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent * evp, timer_t * timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec * value, struct itimerspec * ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 25 "/usr/include/sys/select.h" 2 3 4 int select (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, struct timeval *__timeout) ; int pselect (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, const struct timespec *__timeout, const sigset_t *__set) ; # 14 "/usr/include/cygwin/sys_time.h" 2 3 4 int futimes (int, const struct timeval *); int lutimes (const char *, const struct timeval *); # 62 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; int __attribute__((__cdecl__)) gettimeofday (struct timeval * __p, void * __tz) ; int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) adjtime (const struct timeval *, struct timeval *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval * __value, struct itimerval * __ovalue) ; # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.headers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 6 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 7 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 8 "/usr/include/math.h" 2 3 4 union __dmath { double d; __ULong i[2]; }; union __fmath { float f; __ULong i[1]; }; union __ldmath { long double ld; __ULong i[4]; }; # 108 "/usr/include/math.h" 3 4 extern double atan (double); extern double cos (double); extern double sin (double); extern double tan (double); extern double tanh (double); extern double frexp (double, int *); extern double modf (double, double *); extern double ceil (double); extern double fabs (double); extern double floor (double); extern double acos (double); extern double asin (double); extern double atan2 (double, double); extern double cosh (double); extern double sinh (double); extern double exp (double); extern double ldexp (double, int); extern double log (double); extern double log10 (double); extern double pow (double, double); extern double sqrt (double); extern double fmod (double, double); # 154 "/usr/include/math.h" 3 4 typedef float float_t; typedef double double_t; # 198 "/usr/include/math.h" 3 4 extern int __isinff (float x); extern int __isinfd (double x); extern int __isnanf (float x); extern int __isnand (double x); extern int __fpclassifyf (float x); extern int __fpclassifyd (double x); extern int __signbitf (float x); extern int __signbitd (double x); # 258 "/usr/include/math.h" 3 4 extern double infinity (void); extern double nan (const char *); extern int finite (double); extern double copysign (double, double); extern double logb (double); extern int ilogb (double); extern double asinh (double); extern double cbrt (double); extern double nextafter (double, double); extern double rint (double); extern double scalbn (double, int); extern double exp2 (double); extern double scalbln (double, long int); extern double tgamma (double); extern double nearbyint (double); extern long int lrint (double); extern long long int llrint (double); extern double round (double); extern long int lround (double); extern long long int llround (double); extern double trunc (double); extern double remquo (double, double, int *); extern double fdim (double, double); extern double fmax (double, double); extern double fmin (double, double); extern double fma (double, double, double); extern double log1p (double); extern double expm1 (double); extern double acosh (double); extern double atanh (double); extern double remainder (double, double); extern double gamma (double); extern double lgamma (double); extern double erf (double); extern double erfc (double); extern double log2 (double); extern double hypot (double, double); extern float atanf (float); extern float cosf (float); extern float sinf (float); extern float tanf (float); extern float tanhf (float); extern float frexpf (float, int *); extern float modff (float, float *); extern float ceilf (float); extern float fabsf (float); extern float floorf (float); extern float acosf (float); extern float asinf (float); extern float atan2f (float, float); extern float coshf (float); extern float sinhf (float); extern float expf (float); extern float ldexpf (float, int); extern float logf (float); extern float log10f (float); extern float powf (float, float); extern float sqrtf (float); extern float fmodf (float, float); extern float exp2f (float); extern float scalblnf (float, long int); extern float tgammaf (float); extern float nearbyintf (float); extern long int lrintf (float); extern long long llrintf (float); extern float roundf (float); extern long int lroundf (float); extern long long int llroundf (float); extern float truncf (float); extern float remquof (float, float, int *); extern float fdimf (float, float); extern float fmaxf (float, float); extern float fminf (float, float); extern float fmaf (float, float, float); extern float infinityf (void); extern float nanf (const char *); extern int finitef (float); extern float copysignf (float, float); extern float logbf (float); extern int ilogbf (float); extern float asinhf (float); extern float cbrtf (float); extern float nextafterf (float, float); extern float rintf (float); extern float scalbnf (float, int); extern float log1pf (float); extern float expm1f (float); extern float acoshf (float); extern float atanhf (float); extern float remainderf (float, float); extern float gammaf (float); extern float lgammaf (float); extern float erff (float); extern float erfcf (float); extern float log2f (float); extern float hypotf (float, float); # 463 "/usr/include/math.h" 3 4 extern double drem (double, double); extern void sincos (double, double *, double *); extern double gamma_r (double, int *); extern double lgamma_r (double, int *); extern double y0 (double); extern double y1 (double); extern double yn (int, double); extern double j0 (double); extern double j1 (double); extern double jn (int, double); extern float dremf (float, float); extern void sincosf (float, float *, float *); extern float gammaf_r (float, int *); extern float lgammaf_r (float, int *); extern float y0f (float); extern float y1f (float); extern float ynf (int, float); extern float j0f (float); extern float j1f (float); extern float jnf (int, float); extern double exp10 (double); extern double pow10 (double); extern float exp10f (float); extern float pow10f (float); # 508 "/usr/include/math.h" 3 4 extern int *__signgam (void); # 519 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; int err; }; extern int matherr (struct exception *e); # 583 "/usr/include/math.h" 3 4 enum __fdlibm_version { __fdlibm_ieee = -1, __fdlibm_svid, __fdlibm_xopen, __fdlibm_posix }; extern __attribute__((dllimport)) enum __fdlibm_version __fdlib_version; # 603 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_MATH_H" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.headers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 15 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 9 "/usr/include/machine/_default_types.h" 2 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 15 "/usr/include/features.h" 2 3 4 # 16 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 19 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 20 "/usr/include/cygwin/socket.h" 2 3 4 typedef int socklen_t; typedef uint16_t sa_family_t; struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 43 "/usr/include/cygwin/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char _ss_pad1[((sizeof (int64_t)) - sizeof (sa_family_t))]; int64_t __ss_align; char _ss_pad2[(128 - (sizeof (sa_family_t) + ((sizeof (int64_t)) - sizeof (sa_family_t)) + (sizeof (int64_t))))]; }; # 1 "/usr/include/asm/socket.h" 1 3 4 # 14 "/usr/include/asm/socket.h" 3 4 # 1 "/usr/include/cygwin/if.h" 1 3 4 # 18 "/usr/include/cygwin/if.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 21 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 19 "/usr/include/cygwin/if.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 20 "/usr/include/cygwin/if.h" 2 3 4 # 34 "/usr/include/cygwin/if.h" 3 4 struct if_nameindex { unsigned if_index; char *if_name; }; struct ifreq_frndlyname { int ifrf_len; char ifrf_friendlyname[260]; }; # 59 "/usr/include/cygwin/if.h" 3 4 struct ifreq { union { char ifrn_name[44]; } ifr_ifrn; union { struct sockaddr ifru_addr; struct sockaddr ifru_broadaddr; struct sockaddr ifru_dstaddr; struct sockaddr ifru_netmask; struct sockaddr ifru_hwaddr; int ifru_flags; int ifru_metric; int ifru_mtu; int ifru_ifindex; void *ifru_data; char __ifru_pad[28]; } ifr_ifru; }; # 101 "/usr/include/cygwin/if.h" 3 4 struct ifconf { int ifc_len; union { caddr_t ifcu_buf; struct ifreq *ifcu_req; } ifc_ifcu; }; extern unsigned if_nametoindex (const char *); extern char *if_indextoname (unsigned, char *); extern struct if_nameindex *if_nameindex (void); extern void if_freenameindex (struct if_nameindex *); # 15 "/usr/include/asm/socket.h" 2 3 4 # 52 "/usr/include/cygwin/socket.h" 2 3 4 # 1 "/usr/include/cygwin/sockios.h" 1 3 4 # 53 "/usr/include/cygwin/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 15 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/sys/uio.h" 2 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t readv (int filedes, const struct iovec *vector, int count); extern ssize_t writev (int filedes, const struct iovec *vector, int count); # 54 "/usr/include/cygwin/socket.h" 2 3 4 struct ucred { pid_t pid; uid_t uid; gid_t gid; }; struct linger { unsigned short l_onoff; unsigned short l_linger; }; struct msghdr { void * msg_name; socklen_t msg_namelen; struct iovec * msg_iov; int msg_iovlen; void * msg_control; socklen_t msg_controllen; int msg_flags; }; struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 17 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 17 "/usr/include/sys/time.h" 3 4 struct timeval { time_t tv_sec; suseconds_t tv_usec; }; # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 1 "/usr/include/cygwin/sys_time.h" 1 3 4 # 13 "/usr/include/cygwin/sys_time.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 23 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char * _s, size_t _maxsize, const char * _fmt, const struct tm * _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *, char *) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *, struct tm *) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *, struct tm *) ; char *__attribute__((__cdecl__)) strptime (const char *, const char *, struct tm *) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent * evp, timer_t * timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec * value, struct itimerspec * ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 25 "/usr/include/sys/select.h" 2 3 4 int select (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, struct timeval *__timeout) ; int pselect (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, const struct timespec *__timeout, const sigset_t *__set) ; # 14 "/usr/include/cygwin/sys_time.h" 2 3 4 int futimes (int, const struct timeval *); int lutimes (const char *, const struct timeval *); # 62 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; int __attribute__((__cdecl__)) gettimeofday (struct timeval * __p, void * __tz) ; int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) adjtime (const struct timeval *, struct timeval *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval * __value, struct itimerval * __ovalue) ; # 18 "/usr/include/sys/socket.h" 2 3 4 int accept (int, struct sockaddr *__peer, socklen_t *); int accept4 (int, struct sockaddr *__peer, socklen_t *, int flags); int bind (int, const struct sockaddr *__my_addr, socklen_t __addrlen); int connect (int, const struct sockaddr *, socklen_t); int getpeername (int, struct sockaddr *__peer, socklen_t *); int getsockname (int, struct sockaddr *__addr, socklen_t *); int listen (int, int __n); ssize_t recv (int, void *__buff, size_t __len, int __flags); ssize_t recvfrom (int, void *__buff, size_t __len, int __flags, struct sockaddr *__from, socklen_t *__fromlen); ssize_t recvmsg(int s, struct msghdr *msg, int flags); ssize_t send (int, const void *__buff, size_t __len, int __flags); ssize_t sendmsg(int s, const struct msghdr *msg, int flags); ssize_t sendto (int, const void *, size_t __len, int __flags, const struct sockaddr *__to, socklen_t __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, socklen_t __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, socklen_t *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 7 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 8 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 11 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/machine/malloc.h" 1 3 4 # 14 "/usr/include/malloc.h" 2 3 4 # 22 "/usr/include/malloc.h" 3 4 struct mallinfo { size_t arena; size_t ordblks; size_t smblks; size_t hblks; size_t hblkhd; size_t usmblks; size_t fsmblks; size_t uordblks; size_t fordblks; size_t keepcost; }; extern void * malloc (size_t); extern void free (void *); extern void * realloc (void *, size_t); extern void * calloc (size_t, size_t); extern void * memalign (size_t, size_t); extern struct mallinfo mallinfo (void); extern void malloc_stats (void); extern int mallopt (int, int); extern size_t malloc_usable_size (void *); # 112 "/usr/include/malloc.h" 3 4 extern void * valloc (size_t); extern void * pvalloc (size_t); extern int malloc_trim (size_t); # 138 "/usr/include/malloc.h" 3 4 extern void mstats (char *); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 69 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char *__restrict _s, size_t _maxsize, const char *__restrict _fmt, const struct tm *__restrict _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *__restrict, char *__restrict) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *__restrict, struct tm *__restrict) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *__restrict, struct tm *__restrict) ; char *__attribute__((__cdecl__)) strptime (const char *__restrict, const char *__restrict, struct tm *__restrict) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *__restrict evp, timer_t *__restrict timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *__restrict value, struct itimerspec *__restrict ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/w32api/Ws2tcpip.h" 1 3 4 # 9 "/usr/include/w32api/Ws2tcpip.h" 3 4 # 1 "/usr/include/w32api/_mingw_unicode.h" 1 3 4 # 10 "/usr/include/w32api/Ws2tcpip.h" 2 3 4 # 1 "/usr/include/w32api/winsock2.h" 1 3 4 # 23 "/usr/include/w32api/winsock2.h" 3 4 # 1 "/usr/include/w32api/windows.h" 1 3 4 # 9 "/usr/include/w32api/windows.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 12 "/usr/include/w32api/_mingw.h" 3 4 # 1 "/usr/include/w32api/_mingw_mac.h" 1 3 4 # 13 "/usr/include/w32api/_mingw.h" 2 3 4 # 1 "/usr/include/w32api/_mingw_secapi.h" 1 3 4 # 14 "/usr/include/w32api/_mingw.h" 2 3 4 # 1 "/usr/include/w32api/_cygwin.h" 1 3 4 # 14 "/usr/include/w32api/_cygwin.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/w32api/_cygwin.h" 2 3 4 # 18 "/usr/include/w32api/_mingw.h" 2 3 4 # 282 "/usr/include/w32api/_mingw.h" 3 4 # 1 "/usr/include/w32api/vadefs.h" 1 3 4 # 9 "/usr/include/w32api/vadefs.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 686 "/usr/include/w32api/_mingw.h" 3 4 # 1 "/usr/include/w32api/sdks/_mingw_directx.h" 1 3 4 # 687 "/usr/include/w32api/_mingw.h" 2 3 4 # 1 "/usr/include/w32api/sdks/_mingw_ddk.h" 1 3 4 # 688 "/usr/include/w32api/_mingw.h" 2 3 4 # 10 "/usr/include/w32api/vadefs.h" 2 3 4 #pragma pack(push,_CRT_PACKING) # 22 "/usr/include/w32api/vadefs.h" 3 4 typedef __builtin_va_list __gnuc_va_list; typedef __gnuc_va_list va_list; # 101 "/usr/include/w32api/vadefs.h" 3 4 #pragma pack(pop) # 283 "/usr/include/w32api/_mingw.h" 2 3 4 #pragma pack(push,_CRT_PACKING) # 463 "/usr/include/w32api/_mingw.h" 3 4 typedef int errno_t; typedef long __time32_t; __extension__ typedef long long __time64_t; # 656 "/usr/include/w32api/_mingw.h" 3 4 void __attribute__((__cdecl__)) __debugbreak(void); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __attribute__((__cdecl__)) __debugbreak(void) { __asm__ __volatile__("int {$}3":); } const char *__mingw_get_crt_info (void); #pragma pack(pop) # 10 "/usr/include/w32api/windows.h" 2 3 4 # 1 "/usr/include/w32api/sdkddkver.h" 1 3 4 # 11 "/usr/include/w32api/windows.h" 2 3 4 # 65 "/usr/include/w32api/windows.h" 3 4 # 1 "/usr/include/w32api/excpt.h" 1 3 4 # 9 "/usr/include/w32api/excpt.h" 3 4 # 1 "/usr/include/w32api/crtdefs.h" 1 3 4 # 10 "/usr/include/w32api/crtdefs.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 11 "/usr/include/w32api/crtdefs.h" 2 3 4 # 26 "/usr/include/w32api/crtdefs.h" 3 4 typedef size_t rsize_t; # 153 "/usr/include/w32api/crtdefs.h" 3 4 struct threadlocaleinfostruct; struct threadmbcinfostruct; typedef struct threadlocaleinfostruct *pthreadlocinfo; typedef struct threadmbcinfostruct *pthreadmbcinfo; struct __lc_time_data; typedef struct localeinfo_struct { pthreadlocinfo locinfo; pthreadmbcinfo mbcinfo; } _locale_tstruct,*_locale_t; typedef struct tagLC_ID { unsigned short wLanguage; unsigned short wCountry; unsigned short wCodePage; } LC_ID,*LPLC_ID; typedef struct threadlocaleinfostruct { int refcount; unsigned int lc_codepage; unsigned int lc_collate_cp; unsigned long lc_handle[6]; LC_ID lc_id[6]; struct { char *locale; wchar_t *wlocale; int *refcount; int *wrefcount; } lc_category[6]; int lc_clike; int mb_cur_max; int *lconv_intl_refcount; int *lconv_num_refcount; int *lconv_mon_refcount; struct lconv *lconv; int *ctype1_refcount; unsigned short *ctype1; const unsigned short *pctype; const unsigned char *pclmap; const unsigned char *pcumap; struct __lc_time_data *lc_time_curr; } threadlocinfo; # 10 "/usr/include/w32api/excpt.h" 2 3 4 #pragma pack(push,_CRT_PACKING) struct _EXCEPTION_POINTERS; # 43 "/usr/include/w32api/excpt.h" 3 4 struct _EXCEPTION_RECORD; struct _CONTEXT; # 54 "/usr/include/w32api/excpt.h" 3 4 unsigned long __attribute__((__cdecl__)) _exception_code(void); void *__attribute__((__cdecl__)) _exception_info(void); int __attribute__((__cdecl__)) _abnormal_termination(void); typedef void (__attribute__((__cdecl__)) * _PHNDLR)(int); struct _XCPT_ACTION { unsigned long XcptNum; int SigNum; _PHNDLR XcptAction; }; extern struct _XCPT_ACTION _XcptActTab[]; extern int _XcptActTabCount; extern int _XcptActTabSize; extern int _First_FPE_Indx; extern int _Num_FPE; int __attribute__((__cdecl__)) __CppXcptFilter(unsigned long _ExceptionNum,struct _EXCEPTION_POINTERS * _ExceptionPtr); int __attribute__((__cdecl__)) _XcptFilter(unsigned long _ExceptionNum,struct _EXCEPTION_POINTERS * _ExceptionPtr); typedef int (*PEXCEPTION_HANDLER)(struct _EXCEPTION_RECORD*, void*, struct _CONTEXT*, void*); # 128 "/usr/include/w32api/excpt.h" 3 4 #pragma pack(pop) # 66 "/usr/include/w32api/windows.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdarg.h" 1 3 4 # 67 "/usr/include/w32api/windows.h" 2 3 4 # 1 "/usr/include/w32api/windef.h" 1 3 4 # 1 "/usr/include/w32api/minwindef.h" 1 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 5 "/usr/include/w32api/minwindef.h" 2 3 4 # 1 "/usr/include/w32api/winapifamily.h" 1 3 4 # 6 "/usr/include/w32api/minwindef.h" 2 3 4 # 1 "/usr/include/w32api/specstrings.h" 1 3 4 # 1 "/usr/include/w32api/sal.h" 1 3 4 # 9 "/usr/include/w32api/specstrings.h" 2 3 4 # 7 "/usr/include/w32api/minwindef.h" 2 3 4 # 24 "/usr/include/w32api/minwindef.h" 3 4 typedef unsigned int ULONG; typedef ULONG *PULONG; typedef unsigned short USHORT; typedef USHORT *PUSHORT; typedef unsigned char UCHAR; typedef UCHAR *PUCHAR; typedef char *PSZ; # 110 "/usr/include/w32api/minwindef.h" 3 4 typedef int WINBOOL; typedef int BOOL; typedef WINBOOL *PBOOL; typedef WINBOOL *LPBOOL; typedef unsigned char BYTE; typedef unsigned short WORD; typedef unsigned int DWORD; typedef float FLOAT; typedef FLOAT *PFLOAT; typedef BYTE *PBYTE; typedef BYTE *LPBYTE; typedef int *PINT; typedef int *LPINT; typedef WORD *PWORD; typedef WORD *LPWORD; typedef int *LPLONG; typedef DWORD *PDWORD; typedef DWORD *LPDWORD; typedef void *LPVOID; typedef const void *LPCVOID; typedef int INT; typedef unsigned int UINT; typedef unsigned int *PUINT; # 1 "/usr/include/w32api/winnt.h" 1 3 4 # 15 "/usr/include/w32api/winnt.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 16 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/ctype.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 5 "/usr/include/ctype.h" 2 3 4 int __attribute__((__cdecl__)) isalnum (int __c); int __attribute__((__cdecl__)) isalpha (int __c); int __attribute__((__cdecl__)) iscntrl (int __c); int __attribute__((__cdecl__)) isdigit (int __c); int __attribute__((__cdecl__)) isgraph (int __c); int __attribute__((__cdecl__)) islower (int __c); int __attribute__((__cdecl__)) isprint (int __c); int __attribute__((__cdecl__)) ispunct (int __c); int __attribute__((__cdecl__)) isspace (int __c); int __attribute__((__cdecl__)) isupper (int __c); int __attribute__((__cdecl__)) isxdigit (int __c); int __attribute__((__cdecl__)) tolower (int __c); int __attribute__((__cdecl__)) toupper (int __c); int __attribute__((__cdecl__)) isblank (int __c); int __attribute__((__cdecl__)) isascii (int __c); int __attribute__((__cdecl__)) toascii (int __c); # 45 "/usr/include/ctype.h" 3 4 extern __attribute__((dllimport)) char *__ctype_ptr__; # 109 "/usr/include/ctype.h" 3 4 extern __attribute__((dllimport)) const char _ctype_[]; # 17 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/apiset.h" 1 3 4 # 9 "/usr/include/w32api/apiset.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 10 "/usr/include/w32api/apiset.h" 2 3 4 # 20 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/specstrings.h" 1 3 4 # 24 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/psdk_inc/intrin-impl.h" 1 3 4 # 485 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 void __faststorefence(void); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __faststorefence(void) { __builtin_ia32_sfence(); } __extension__ void __stosq(unsigned long long *, unsigned long long, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosq(unsigned long long *Dest, unsigned long long Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "q" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } __extension__ unsigned char _interlockedbittestandset64(long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandset64( long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char _interlockedbittestandreset64(long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandreset64( long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char _interlockedbittestandcomplement64(long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandcomplement64( long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char InterlockedBitTestAndSet64(volatile long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndSet64(volatile long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char InterlockedBitTestAndReset64(volatile long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndReset64(volatile long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char InterlockedBitTestAndComplement64(volatile long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndComplement64(volatile long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ long long _InterlockedAnd64(long long volatile *, long long); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedAnd64(volatile long long *Destination, long long Value) { return __sync_fetch_and_and(Destination, Value); } __extension__ long long _InterlockedOr64(long long volatile *, long long); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedOr64(volatile long long *Destination, long long Value) { return __sync_fetch_and_or(Destination, Value); } __extension__ long long _InterlockedXor64(long long volatile *, long long); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedXor64(volatile long long *Destination, long long Value) { return __sync_fetch_and_xor(Destination, Value); } __extension__ long long _InterlockedIncrement64(long long volatile *Addend); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedIncrement64(long long volatile *Addend) { return __sync_add_and_fetch(Addend, 1); } __extension__ long long _InterlockedDecrement64(long long volatile *Addend); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedDecrement64(long long volatile *Addend) { return __sync_sub_and_fetch(Addend, 1); } __extension__ long long _InterlockedExchange64(long long volatile *Target, long long Value); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedExchange64(long long volatile *Target, long long Value) { return __sync_lock_test_and_set(Target, Value); } __extension__ long long _InterlockedExchangeAdd64(long long volatile *Addend, long long Value); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedExchangeAdd64(long long volatile *Addend, long long Value) { return __sync_fetch_and_add(Addend, Value); } unsigned char __readgsbyte(unsigned int Offset); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char __readgsbyte(unsigned int Offset) { unsigned char ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned char *) (size_t) Offset))); return ret; } unsigned short __readgsword(unsigned int Offset); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned short __readgsword(unsigned int Offset) { unsigned short ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned short *) (size_t) Offset))); return ret; } unsigned int __readgsdword(unsigned int Offset); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned int __readgsdword(unsigned int Offset) { unsigned int ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned int *) (size_t) Offset))); return ret; } __extension__ unsigned long long __readgsqword(unsigned int Offset); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned long long __readgsqword(unsigned int Offset) { unsigned long long ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned long long *) (size_t) Offset))); return ret; } void __writegsbyte(unsigned int Offset,unsigned char Data); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsbyte(unsigned int Offset, unsigned char Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned char *) (size_t) Offset)) : [Data] "ri" (Data)); } void __writegsword(unsigned int Offset,unsigned short Data); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsword(unsigned int Offset, unsigned short Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned short *) (size_t) Offset)) : [Data] "ri" (Data)); } void __writegsdword(unsigned int Offset,unsigned int Data); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsdword(unsigned int Offset, unsigned int Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned int *) (size_t) Offset)) : [Data] "ri" (Data)); } __extension__ void __writegsqword(unsigned int Offset,unsigned long long Data); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsqword(unsigned int Offset, unsigned long long Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned long long *) (size_t) Offset)) : [Data] "ri" (Data)); } __extension__ unsigned char _BitScanForward64(unsigned int *Index, unsigned long long Mask); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanForward64(unsigned int *Index, unsigned long long Mask) { unsigned long long n; __asm__ ("bsf" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } __extension__ unsigned char _BitScanReverse64(unsigned int *Index, unsigned long long Mask); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanReverse64(unsigned int *Index, unsigned long long Mask) { unsigned long long n; __asm__ ("bsr" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } __extension__ unsigned char _bittest64(long long const *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittest64(const long long *Base, long long Offset) { unsigned char old; __asm__ ("bt{%z[Base] %[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=rm" (old) : [Offset] "J" "r" (Offset), [Base] "rm" (*Base) : "cc"); return old; } __extension__ unsigned char _bittestandset64(long long *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandset64(long long *Base, long long Offset) { unsigned char old; __asm__ ("bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "J" "r" (Offset) : "cc"); return old; } __extension__ unsigned char _bittestandreset64(long long *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandreset64(long long *Base, long long Offset) { unsigned char old; __asm__ ("btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "J" "r" (Offset) : "cc"); return old; } __extension__ unsigned char _bittestandcomplement64(long long *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandcomplement64(long long *Base, long long Offset) { unsigned char old; __asm__ ("btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "J" "r" (Offset) : "cc"); return old; } # 763 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 __extension__ void __movsq(unsigned long long *Dest, unsigned long long const *Source, size_t Count); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsq(unsigned long long *Destination, unsigned long long const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "q" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } # 838 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 void __int2c(void); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __int2c(void) { __asm__ __volatile__("int {$}" "0x2c" :); } void __stosb(unsigned char *, unsigned char, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosb(unsigned char *Dest, unsigned char Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "b" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } void __stosw(unsigned short *, unsigned short, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosw(unsigned short *Dest, unsigned short Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "w" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } void __stosd(unsigned int *, unsigned int, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosd(unsigned int *Dest, unsigned int Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "d" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } unsigned char _interlockedbittestandset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandset( int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char _interlockedbittestandreset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandreset( int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char _interlockedbittestandcomplement(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandcomplement( int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char InterlockedBitTestAndSet(volatile int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndSet(volatile int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char InterlockedBitTestAndReset(volatile int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndReset(volatile int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char InterlockedBitTestAndComplement(volatile int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndComplement(volatile int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } int _InterlockedAnd(int volatile *, int); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedAnd(volatile int *Destination, int Value) { return __sync_fetch_and_and(Destination, Value); } int _InterlockedOr(int volatile *, int); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedOr(volatile int *Destination, int Value) { return __sync_fetch_and_or(Destination, Value); } int _InterlockedXor(int volatile *, int); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedXor(volatile int *Destination, int Value) { return __sync_fetch_and_xor(Destination, Value); } short _InterlockedIncrement16(short volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) short _InterlockedIncrement16(short volatile *Addend) { return __sync_add_and_fetch(Addend, 1); } short _InterlockedDecrement16(short volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) short _InterlockedDecrement16(short volatile *Addend) { return __sync_sub_and_fetch(Addend, 1); } short _InterlockedCompareExchange16(short volatile *Destination, short ExChange, short Comperand); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) short _InterlockedCompareExchange16(short volatile *Destination, short ExChange, short Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } int _InterlockedExchangeAdd(int volatile *Addend, int Value); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedExchangeAdd(int volatile *Addend, int Value) { return __sync_fetch_and_add(Addend, Value); } int _InterlockedCompareExchange(int volatile *Destination, int ExChange, int Comperand); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedCompareExchange(int volatile *Destination, int ExChange, int Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } int _InterlockedIncrement(int volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedIncrement(int volatile *Addend) { return __sync_add_and_fetch(Addend, 1); } int _InterlockedDecrement(int volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedDecrement(int volatile *Addend) { return __sync_sub_and_fetch(Addend, 1); } int _InterlockedExchange(int volatile *Target, int Value); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedExchange(int volatile *Target, int Value) { return __sync_lock_test_and_set(Target, Value); } __extension__ long long _InterlockedCompareExchange64(long long volatile *Destination, long long ExChange, long long Comperand); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedCompareExchange64(long long volatile *Destination, long long ExChange, long long Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } void *_InterlockedCompareExchangePointer(void * volatile *Destination, void *ExChange, void *Comperand); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void *_InterlockedCompareExchangePointer(void *volatile *Destination, void *ExChange, void *Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } void *_InterlockedExchangePointer(void *volatile *Target,void *Value); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void *_InterlockedExchangePointer(void *volatile *Target,void *Value) { return __sync_lock_test_and_set(Target, Value); } unsigned char _BitScanForward(unsigned int *Index, unsigned int Mask); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanForward(unsigned int *Index, unsigned int Mask) { unsigned int n; __asm__ ("bsf" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } unsigned char _BitScanReverse(unsigned int *Index, unsigned int Mask); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanReverse(unsigned int *Index, unsigned int Mask) { unsigned int n; __asm__ ("bsr" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } unsigned char _bittest(int const *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittest(const int *Base, int Offset) { unsigned char old; __asm__ ("bt{%z[Base] %[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=rm" (old) : [Offset] "I" "r" (Offset), [Base] "rm" (*Base) : "cc"); return old; } unsigned char _bittestandset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandset(int *Base, int Offset) { unsigned char old; __asm__ ("bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "I" "r" (Offset) : "cc"); return old; } unsigned char _bittestandreset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandreset(int *Base, int Offset) { unsigned char old; __asm__ ("btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "I" "r" (Offset) : "cc"); return old; } unsigned char _bittestandcomplement(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandcomplement(int *Base, int Offset) { unsigned char old; __asm__ ("btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "I" "r" (Offset) : "cc"); return old; } # 1203 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 void __movsb(unsigned char *Destination, unsigned char const *Source, size_t Count); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsb(unsigned char *Destination, unsigned char const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "b" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } void __movsw(unsigned short *Dest, unsigned short const *Source, size_t Count); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsw(unsigned short *Destination, unsigned short const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "w" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } void __movsd(unsigned int *Dest, unsigned int const *Source, size_t Count); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsd(unsigned int *Destination, unsigned int const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "d" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } # 27 "/usr/include/w32api/winnt.h" 2 3 4 # 134 "/usr/include/w32api/winnt.h" 3 4 # 1 "/usr/include/w32api/basetsd.h" 1 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 6 "/usr/include/w32api/basetsd.h" 2 3 4 __extension__ typedef unsigned long long POINTER_64_INT; # 29 "/usr/include/w32api/basetsd.h" 3 4 typedef signed char INT8,*PINT8; typedef signed short INT16,*PINT16; typedef signed int INT32,*PINT32; __extension__ typedef signed long long INT64,*PINT64; typedef unsigned char UINT8,*PUINT8; typedef unsigned short UINT16,*PUINT16; typedef unsigned int UINT32,*PUINT32; __extension__ typedef unsigned long long UINT64,*PUINT64; typedef signed int LONG32,*PLONG32; typedef unsigned int ULONG32,*PULONG32; typedef unsigned int DWORD32,*PDWORD32; __extension__ typedef long long INT_PTR,*PINT_PTR; __extension__ typedef unsigned long long UINT_PTR,*PUINT_PTR; __extension__ typedef long long LONG_PTR,*PLONG_PTR; __extension__ typedef unsigned long long ULONG_PTR,*PULONG_PTR; # 62 "/usr/include/w32api/basetsd.h" 3 4 __extension__ typedef long long SHANDLE_PTR; __extension__ typedef unsigned long long HANDLE_PTR; typedef unsigned int UHALF_PTR,*PUHALF_PTR; typedef int HALF_PTR,*PHALF_PTR; static __inline unsigned int HandleToULong (const void *h) { return ((unsigned int) (ULONG_PTR) h); } static __inline int HandleToLong (const void *h) { return ((int) (LONG_PTR) h); } static __inline void *ULongToHandle (const unsigned int h) { return ((void *) (UINT_PTR) h); } static __inline void *LongToHandle (const int h) { return ((void *) (INT_PTR) h); } static __inline unsigned int PtrToUlong (const void *p) { return ((unsigned int) (ULONG_PTR) p); } static __inline unsigned int PtrToUint (const void *p) { return ((unsigned int) (UINT_PTR) p); } static __inline unsigned short PtrToUshort (const void *p) { return ((unsigned short) (unsigned int) (ULONG_PTR) p); } static __inline int PtrToLong (const void *p) { return ((int) (LONG_PTR) p); } static __inline int PtrToInt (const void *p) { return ((int) (INT_PTR) p); } static __inline short PtrToShort (const void *p) { return ((short) (int) (LONG_PTR) p); } static __inline void *IntToPtr (const int i) { return ((void *) (INT_PTR)i); } static __inline void *UIntToPtr (const unsigned int ui) { return ((void *) (UINT_PTR)ui); } static __inline void *LongToPtr (const int l) { return ((void *) (LONG_PTR)l); } static __inline void *ULongToPtr (const unsigned int ul) { return ((void *) (ULONG_PTR)ul); } static __inline void *Ptr32ToPtr (const void * p) { return ((void *) (ULONG_PTR) (unsigned int) (ULONG_PTR) p); } static __inline void *Handle32ToHandle (const void * h) { return ((void *) (LONG_PTR) (int) (ULONG_PTR) h); } static __inline void * PtrToPtr32 (const void *p) { return ((void *) (ULONG_PTR) (unsigned int) (ULONG_PTR) p); } # 147 "/usr/include/w32api/basetsd.h" 3 4 __extension__ typedef ULONG_PTR SIZE_T,*PSIZE_T; __extension__ typedef LONG_PTR SSIZE_T,*PSSIZE_T; # 191 "/usr/include/w32api/basetsd.h" 3 4 __extension__ typedef ULONG_PTR DWORD_PTR,*PDWORD_PTR; __extension__ typedef long long LONG64,*PLONG64; __extension__ typedef unsigned long long ULONG64,*PULONG64; __extension__ typedef unsigned long long DWORD64,*PDWORD64; __extension__ typedef ULONG_PTR KAFFINITY; __extension__ typedef KAFFINITY *PKAFFINITY; # 135 "/usr/include/w32api/winnt.h" 2 3 4 # 236 "/usr/include/w32api/winnt.h" 3 4 typedef void *PVOID; typedef void *PVOID64; # 260 "/usr/include/w32api/winnt.h" 3 4 typedef char CHAR; typedef short SHORT; typedef int LONG; typedef int INT; typedef wchar_t WCHAR; typedef WCHAR *PWCHAR,*LPWCH,*PWCH; typedef const WCHAR *LPCWCH,*PCWCH; typedef WCHAR *NWPSTR,*LPWSTR,*PWSTR; typedef PWSTR *PZPWSTR; typedef const PWSTR *PCZPWSTR; typedef WCHAR *LPUWSTR,*PUWSTR; typedef const WCHAR *LPCWSTR,*PCWSTR; typedef PCWSTR *PZPCWSTR; typedef const WCHAR *LPCUWSTR,*PCUWSTR; typedef WCHAR *PZZWSTR; typedef const WCHAR *PCZZWSTR; typedef WCHAR *PUZZWSTR; typedef const WCHAR *PCUZZWSTR; typedef WCHAR *PNZWCH; typedef const WCHAR *PCNZWCH; typedef WCHAR *PUNZWCH; typedef const WCHAR *PCUNZWCH; # 309 "/usr/include/w32api/winnt.h" 3 4 typedef CHAR *PCHAR,*LPCH,*PCH; typedef const CHAR *LPCCH,*PCCH; typedef CHAR *NPSTR,*LPSTR,*PSTR; typedef PSTR *PZPSTR; typedef const PSTR *PCZPSTR; typedef const CHAR *LPCSTR,*PCSTR; typedef PCSTR *PZPCSTR; typedef CHAR *PZZSTR; typedef const CHAR *PCZZSTR; typedef CHAR *PNZCH; typedef const CHAR *PCNZCH; # 348 "/usr/include/w32api/winnt.h" 3 4 typedef char TCHAR, *PTCHAR; typedef unsigned char TBYTE, *PTBYTE; typedef LPSTR LPTCH,PTCH; typedef LPCCH LPCTCH,PCTCH; typedef LPSTR PTSTR,LPTSTR,PUTSTR,LPUTSTR; typedef LPCSTR PCTSTR,LPCTSTR,PCUTSTR,LPCUTSTR; typedef PZZSTR PZZTSTR, PUZZTSTR; typedef PCZZSTR PCZZTSTR, PCUZZTSTR; typedef PZPSTR PZPTSTR; typedef PNZCH PNZTCH, PUNZTCH; typedef PCNZCH PCNZTCH, PCUNZTCH; typedef SHORT *PSHORT; typedef LONG *PLONG; typedef struct _GROUP_AFFINITY { KAFFINITY Mask; WORD Group; WORD Reserved[3]; } GROUP_AFFINITY, *PGROUP_AFFINITY; typedef void *HANDLE; typedef HANDLE *PHANDLE; typedef BYTE FCHAR; typedef WORD FSHORT; typedef DWORD FLONG; typedef LONG HRESULT; # 420 "/usr/include/w32api/winnt.h" 3 4 typedef char CCHAR; typedef DWORD LCID; typedef PDWORD PLCID; typedef WORD LANGID; typedef enum { UNSPECIFIED_COMPARTMENT_ID = 0, DEFAULT_COMPARTMENT_ID } COMPARTMENT_ID,*PCOMPARTMENT_ID; # 449 "/usr/include/w32api/winnt.h" 3 4 typedef struct _FLOAT128 { __extension__ long long LowPart; __extension__ long long HighPart; } FLOAT128; typedef FLOAT128 *PFLOAT128; __extension__ typedef long long LONGLONG; __extension__ typedef unsigned long long ULONGLONG; typedef LONGLONG *PLONGLONG; typedef ULONGLONG *PULONGLONG; typedef LONGLONG USN; typedef union _LARGE_INTEGER { __extension__ struct { DWORD LowPart; LONG HighPart; } ; struct { DWORD LowPart; LONG HighPart; } u; LONGLONG QuadPart; } LARGE_INTEGER; typedef LARGE_INTEGER *PLARGE_INTEGER; typedef union _ULARGE_INTEGER { __extension__ struct { DWORD LowPart; DWORD HighPart; } ; struct { DWORD LowPart; DWORD HighPart; } u; ULONGLONG QuadPart; } ULARGE_INTEGER; typedef ULARGE_INTEGER *PULARGE_INTEGER; typedef struct _LUID { DWORD LowPart; LONG HighPart; } LUID,*PLUID; typedef ULONGLONG DWORDLONG; typedef DWORDLONG *PDWORDLONG; # 533 "/usr/include/w32api/winnt.h" 3 4 unsigned char __attribute__((__cdecl__)) _rotl8(unsigned char Value,unsigned char Shift); unsigned short __attribute__((__cdecl__)) _rotl16(unsigned short Value,unsigned char Shift); unsigned char __attribute__((__cdecl__)) _rotr8(unsigned char Value,unsigned char Shift); unsigned short __attribute__((__cdecl__)) _rotr16(unsigned short Value,unsigned char Shift); unsigned int __attribute__((__cdecl__)) _rotl(unsigned int Value,int Shift); unsigned int __attribute__((__cdecl__)) _rotr(unsigned int Value,int Shift); __extension__ unsigned long long __attribute__((__cdecl__)) _rotl64(unsigned long long Value,int Shift); __extension__ unsigned long long __attribute__((__cdecl__)) _rotr64(unsigned long long Value,int Shift); # 572 "/usr/include/w32api/winnt.h" 3 4 typedef BYTE BOOLEAN; typedef BOOLEAN *PBOOLEAN; typedef struct _LIST_ENTRY { struct _LIST_ENTRY *Flink; struct _LIST_ENTRY *Blink; } LIST_ENTRY,*PLIST_ENTRY,* PRLIST_ENTRY; typedef struct _SINGLE_LIST_ENTRY { struct _SINGLE_LIST_ENTRY *Next; } SINGLE_LIST_ENTRY,*PSINGLE_LIST_ENTRY; typedef struct LIST_ENTRY32 { DWORD Flink; DWORD Blink; } LIST_ENTRY32; typedef LIST_ENTRY32 *PLIST_ENTRY32; typedef struct LIST_ENTRY64 { ULONGLONG Flink; ULONGLONG Blink; } LIST_ENTRY64; typedef LIST_ENTRY64 *PLIST_ENTRY64; # 1 "/usr/include/w32api/guiddef.h" 1 3 4 # 9 "/usr/include/w32api/guiddef.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 10 "/usr/include/w32api/guiddef.h" 2 3 4 # 19 "/usr/include/w32api/guiddef.h" 3 4 typedef struct _GUID { unsigned int Data1; unsigned short Data2; unsigned short Data3; unsigned char Data4[8]; } GUID; # 71 "/usr/include/w32api/guiddef.h" 3 4 typedef GUID *LPGUID; typedef const GUID *LPCGUID; typedef GUID IID; typedef IID *LPIID; typedef GUID CLSID; typedef CLSID *LPCLSID; typedef GUID FMTID; typedef FMTID *LPFMTID; # 148 "/usr/include/w32api/guiddef.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 11 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 13 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 18 "/usr/include/string.h" 2 3 4 void * __attribute__((__cdecl__)) memchr (const void *, int, size_t); int __attribute__((__cdecl__)) memcmp (const void *, const void *, size_t); void * __attribute__((__cdecl__)) memcpy (void * , const void * , size_t); void * __attribute__((__cdecl__)) memmove (void *, const void *, size_t); void * __attribute__((__cdecl__)) memset (void *, int, size_t); char *__attribute__((__cdecl__)) strcat (char *, const char *); char *__attribute__((__cdecl__)) strchr (const char *, int); int __attribute__((__cdecl__)) strcmp (const char *, const char *); int __attribute__((__cdecl__)) strcoll (const char *, const char *); char *__attribute__((__cdecl__)) strcpy (char *, const char *); size_t __attribute__((__cdecl__)) strcspn (const char *, const char *); char *__attribute__((__cdecl__)) strerror (int); size_t __attribute__((__cdecl__)) strlen (const char *); char *__attribute__((__cdecl__)) strncat (char *, const char *, size_t); int __attribute__((__cdecl__)) strncmp (const char *, const char *, size_t); char *__attribute__((__cdecl__)) strncpy (char *, const char *, size_t); char *__attribute__((__cdecl__)) strpbrk (const char *, const char *); char *__attribute__((__cdecl__)) strrchr (const char *, int); size_t __attribute__((__cdecl__)) strspn (const char *, const char *); char *__attribute__((__cdecl__)) strstr (const char *, const char *); char *__attribute__((__cdecl__)) strtok (char *, const char *); size_t __attribute__((__cdecl__)) strxfrm (char *, const char *, size_t); char *__attribute__((__cdecl__)) strtok_r (char *, const char *, char **); int __attribute__((__cdecl__)) bcmp (const void *, const void *, size_t); void __attribute__((__cdecl__)) bcopy (const void *, void *, size_t); void __attribute__((__cdecl__)) bzero (void *, size_t); int __attribute__((__cdecl__)) ffs (int); char *__attribute__((__cdecl__)) index (const char *, int); void * __attribute__((__cdecl__)) memccpy (void * , const void * , int, size_t); void * __attribute__((__cdecl__)) mempcpy (void *, const void *, size_t); void * __attribute__((__cdecl__)) memmem (const void *, size_t, const void *, size_t); void * __attribute__((__cdecl__)) memrchr (const void *, int, size_t); void * __attribute__((__cdecl__)) rawmemchr (const void *, int); char *__attribute__((__cdecl__)) rindex (const char *, int); char *__attribute__((__cdecl__)) stpcpy (char *, const char *); char *__attribute__((__cdecl__)) stpncpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strcasecmp (const char *, const char *); char *__attribute__((__cdecl__)) strcasestr (const char *, const char *); char *__attribute__((__cdecl__)) strchrnul (const char *, int); char *__attribute__((__cdecl__)) strdup (const char *); char *__attribute__((__cdecl__)) _strdup_r (struct _reent *, const char *); char *__attribute__((__cdecl__)) strndup (const char *, size_t); char *__attribute__((__cdecl__)) _strndup_r (struct _reent *, const char *, size_t); # 87 "/usr/include/string.h" 3 4 int __attribute__((__cdecl__)) strerror_r (int, char *, size_t) __asm__ ("" "__xpg_strerror_r"); size_t __attribute__((__cdecl__)) strlcat (char *, const char *, size_t); size_t __attribute__((__cdecl__)) strlcpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); char * __attribute__((__cdecl__)) _strerror_r (struct _reent *, int, int, int *); Defined "HAVE_WS2TCPIP_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 14 "/usr/include/endian.h" 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 15 "/usr/include/endian.h" 2 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/ieeefp.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 5 "/usr/include/ieeefp.h" 2 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 7 "/usr/include/ieeefp.h" 2 3 4 # 53 "/usr/include/ieeefp.h" 3 4 typedef union { double value; struct { unsigned int fraction1:32; unsigned int fraction0:20; unsigned int exponent :11; unsigned int sign : 1; } number; struct { unsigned int function1:32; unsigned int function0:19; unsigned int quiet:1; unsigned int exponent: 11; unsigned int sign : 1; } nan; struct { unsigned long lsw; unsigned long msw; } parts; long aslong[2]; } __ieee_double_shape_type; # 125 "/usr/include/ieeefp.h" 3 4 typedef union { float value; struct { unsigned int fraction0: 7; unsigned int fraction1: 16; unsigned int exponent: 8; unsigned int sign : 1; } number; struct { unsigned int function1:16; unsigned int function0:6; unsigned int quiet:1; unsigned int exponent:8; unsigned int sign:1; } nan; long p1; } __ieee_float_shape_type; # 155 "/usr/include/ieeefp.h" 3 4 typedef int fp_rnd; fp_rnd __attribute__((__cdecl__)) fpgetround (void); fp_rnd __attribute__((__cdecl__)) fpsetround (fp_rnd); typedef int fp_except; fp_except __attribute__((__cdecl__)) fpgetmask (void); fp_except __attribute__((__cdecl__)) fpsetmask (fp_except); fp_except __attribute__((__cdecl__)) fpgetsticky (void); fp_except __attribute__((__cdecl__)) fpsetsticky (fp_except); typedef int fp_rdi; fp_rdi __attribute__((__cdecl__)) fpgetroundtoi (void); fp_rdi __attribute__((__cdecl__)) fpsetroundtoi (fp_rdi); int __attribute__((__cdecl__)) isnan (double); int __attribute__((__cdecl__)) isinf (double); int __attribute__((__cdecl__)) finite (double); int __attribute__((__cdecl__)) isnanf (float); int __attribute__((__cdecl__)) isinff (float); int __attribute__((__cdecl__)) finitef (float); # 254 "/usr/include/ieeefp.h" 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_IEEEFP_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 10 "/usr/include/strings.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 11 "/usr/include/strings.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/strings.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 69 "/usr/include/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 14 "/usr/include/strings.h" 2 3 4 int __attribute__((__cdecl__)) bcmp (const void *, const void *, size_t); void __attribute__((__cdecl__)) bcopy (const void *, void *, size_t); void __attribute__((__cdecl__)) bzero (void *, size_t); char *__attribute__((__cdecl__)) index (const char *, int); char *__attribute__((__cdecl__)) rindex (const char *, int); int __attribute__((__cdecl__)) ffs (int); int __attribute__((__cdecl__)) strcasecmp (const char *, const char *); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 23 "/usr/include/sched.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 24 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/sys/sched.h" 1 3 4 # 46 "/usr/include/sys/sched.h" 3 4 struct sched_param { int sched_priority; # 59 "/usr/include/sys/sched.h" 3 4 }; # 25 "/usr/include/sched.h" 2 3 4 # 34 "/usr/include/sched.h" 3 4 int sched_setparam( pid_t __pid, const struct sched_param *__param ); int sched_getparam( pid_t __pid, struct sched_param *__param ); int sched_setscheduler( pid_t __pid, int __policy, const struct sched_param *__param ); int sched_getscheduler( pid_t __pid ); int sched_get_priority_max( int __policy ); int sched_get_priority_min( int __policy ); int sched_rr_get_interval( pid_t __pid, struct timespec *__interval ); int sched_yield( void ); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/w32api/WindowsX.h" 1 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_WINDOWSX_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 16 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 9 "/usr/include/machine/_default_types.h" 2 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 17 "/usr/include/sys/sysinfo.h" 2 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char __f[10]; }; extern int sysinfo (struct sysinfo *); extern int get_nprocs_conf (void); extern int get_nprocs (void); extern long get_phys_pages (void); extern long get_avphys_pages (void); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 15 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 16 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 17 "/usr/include/sys/time.h" 3 4 struct timeval { time_t tv_sec; suseconds_t tv_usec; }; # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 1 "/usr/include/cygwin/sys_time.h" 1 3 4 # 13 "/usr/include/cygwin/sys_time.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 17 "/usr/include/sys/select.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 18 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char * _s, size_t _maxsize, const char * _fmt, const struct tm * _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *, char *) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *, struct tm *) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *, struct tm *) ; char *__attribute__((__cdecl__)) strptime (const char *, const char *, struct tm *) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent * evp, timer_t * timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec * value, struct itimerspec * ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 25 "/usr/include/sys/select.h" 2 3 4 int select (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, struct timeval *__timeout) ; int pselect (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, const struct timespec *__timeout, const sigset_t *__set) ; # 14 "/usr/include/cygwin/sys_time.h" 2 3 4 int futimes (int, const struct timeval *); int lutimes (const char *, const struct timeval *); # 62 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; int __attribute__((__cdecl__)) gettimeofday (struct timeval * __p, void * __tz) ; int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) adjtime (const struct timeval *, struct timeval *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval * __value, struct itimerval * __ovalue) ; # 15 "/usr/include/sys/resource.h" 2 3 4 # 41 "/usr/include/sys/resource.h" 3 4 typedef unsigned long rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 17 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 18 "/usr/include/sys/wait.h" 2 3 4 # 35 "/usr/include/sys/wait.h" 3 4 typedef union { int *__int_ptr; union wait *__union_wait_ptr; } __wait_status_ptr_t __attribute__ ((__transparent_union__)); pid_t wait (__wait_status_ptr_t __status); pid_t waitpid (pid_t __pid, __wait_status_ptr_t __status, int __options); pid_t wait3 (__wait_status_ptr_t __status, int __options, struct rusage *__rusage); pid_t wait4 (pid_t __pid, __wait_status_ptr_t __status, int __options, struct rusage *__rusage); union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 12 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 17 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 19 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/machine/stdlib.h" 1 3 4 # 17 "/usr/include/machine/stdlib.h" 3 4 char *mkdtemp (char *); # 20 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 22 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/cygwin/stdlib.h" 1 3 4 # 14 "/usr/include/cygwin/stdlib.h" 3 4 # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 15 "/usr/include/cygwin/stdlib.h" 2 3 4 __uint32_t arc4random(void); void arc4random_addrandom(unsigned char *, int); void arc4random_buf(void *, size_t); void arc4random_stir(void); __uint32_t arc4random_uniform(__uint32_t); const char *getprogname (void); void setprogname (const char *); char *canonicalize_file_name (const char *); int unsetenv (const char *); char *initstate (unsigned seed, char *state, size_t size); long random (void); char *setstate (const char *state); void srandom (unsigned); char *ptsname (int); int ptsname_r(int, char *, size_t); int getpt (void); int grantpt (int); int unlockpt (int); int posix_openpt (int); int posix_memalign (void **, size_t, size_t); extern void * memalign (size_t, size_t); extern void * valloc (size_t); # 26 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; typedef int (*__compar_fn_t) (const void *, const void *); int __attribute__((__cdecl__)) __locale_mb_cur_max (void); void __attribute__((__cdecl__)) abort (void) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) abs (int); int __attribute__((__cdecl__)) atexit (void (*__func)(void)); double __attribute__((__cdecl__)) atof (const char *__nptr); float __attribute__((__cdecl__)) atoff (const char *__nptr); int __attribute__((__cdecl__)) atoi (const char *__nptr); int __attribute__((__cdecl__)) _atoi_r (struct _reent *, const char *__nptr); long __attribute__((__cdecl__)) atol (const char *__nptr); long __attribute__((__cdecl__)) _atol_r (struct _reent *, const char *__nptr); void * __attribute__((__cdecl__)) bsearch (const void * __key, const void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar) ; void * __attribute__((__cdecl__)) calloc (size_t __nmemb, size_t __size) ; div_t __attribute__((__cdecl__)) div (int __numer, int __denom); void __attribute__((__cdecl__)) exit (int __status) __attribute__ ((__noreturn__)); void __attribute__((__cdecl__)) free (void *) ; char * __attribute__((__cdecl__)) getenv (const char *__string); char * __attribute__((__cdecl__)) _getenv_r (struct _reent *, const char *__string); char * __attribute__((__cdecl__)) _findenv (const char *, int *); char * __attribute__((__cdecl__)) _findenv_r (struct _reent *, const char *, int *); extern char *suboptarg; int __attribute__((__cdecl__)) getsubopt (char **, char * const *, char **); long __attribute__((__cdecl__)) labs (long); ldiv_t __attribute__((__cdecl__)) ldiv (long __numer, long __denom); void * __attribute__((__cdecl__)) malloc (size_t __size) ; int __attribute__((__cdecl__)) mblen (const char *, size_t); int __attribute__((__cdecl__)) _mblen_r (struct _reent *, const char *, size_t, _mbstate_t *); int __attribute__((__cdecl__)) mbtowc (wchar_t *__restrict, const char *__restrict, size_t); int __attribute__((__cdecl__)) _mbtowc_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); int __attribute__((__cdecl__)) wctomb (char *, wchar_t); int __attribute__((__cdecl__)) _wctomb_r (struct _reent *, char *, wchar_t, _mbstate_t *); size_t __attribute__((__cdecl__)) mbstowcs (wchar_t *__restrict, const char *__restrict, size_t); size_t __attribute__((__cdecl__)) _mbstowcs_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); size_t __attribute__((__cdecl__)) wcstombs (char *__restrict, const wchar_t *__restrict, size_t); size_t __attribute__((__cdecl__)) _wcstombs_r (struct _reent *, char *__restrict, const wchar_t *__restrict, size_t, _mbstate_t *); char * __attribute__((__cdecl__)) mkdtemp (char *); int __attribute__((__cdecl__)) mkostemp (char *, int); int __attribute__((__cdecl__)) mkostemps (char *, int, int); int __attribute__((__cdecl__)) mkstemp (char *); int __attribute__((__cdecl__)) mkstemps (char *, int); char * __attribute__((__cdecl__)) mktemp (char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); char * __attribute__((__cdecl__)) _mkdtemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkostemp_r (struct _reent *, char *, int); int __attribute__((__cdecl__)) _mkostemps_r (struct _reent *, char *, int, int); int __attribute__((__cdecl__)) _mkstemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkstemps_r (struct _reent *, char *, int); char * __attribute__((__cdecl__)) _mktemp_r (struct _reent *, char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); void __attribute__((__cdecl__)) qsort (void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar); int __attribute__((__cdecl__)) rand (void); void * __attribute__((__cdecl__)) realloc (void * __r, size_t __size) ; void * __attribute__((__cdecl__)) reallocf (void * __r, size_t __size); char * __attribute__((__cdecl__)) realpath (const char *__restrict path, char *__restrict resolved_path); void __attribute__((__cdecl__)) srand (unsigned __seed); double __attribute__((__cdecl__)) strtod (const char *__restrict __n, char **__restrict __end_PTR); double __attribute__((__cdecl__)) _strtod_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR); float __attribute__((__cdecl__)) strtof (const char *__restrict __n, char **__restrict __end_PTR); long __attribute__((__cdecl__)) strtol (const char *__restrict __n, char **__restrict __end_PTR, int __base); long __attribute__((__cdecl__)) _strtol_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) strtoul (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) _strtoul_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); int __attribute__((__cdecl__)) system (const char *__string); long __attribute__((__cdecl__)) a64l (const char *__input); char * __attribute__((__cdecl__)) l64a (long __input); char * __attribute__((__cdecl__)) _l64a_r (struct _reent *,long __input); int __attribute__((__cdecl__)) on_exit (void (*__func)(int, void *),void * __arg); void __attribute__((__cdecl__)) _Exit (int __status) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) putenv (char *__string); int __attribute__((__cdecl__)) _putenv_r (struct _reent *, char *__string); void * __attribute__((__cdecl__)) _reallocf_r (struct _reent *, void *, size_t); int __attribute__((__cdecl__)) setenv (const char *__string, const char *__value, int __overwrite); int __attribute__((__cdecl__)) _setenv_r (struct _reent *, const char *__string, const char *__value, int __overwrite); char * __attribute__((__cdecl__)) gcvt (double,int,char *); char * __attribute__((__cdecl__)) gcvtf (float,int,char *); char * __attribute__((__cdecl__)) fcvt (double,int,int *,int *); char * __attribute__((__cdecl__)) fcvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) ecvt (double,int,int *,int *); char * __attribute__((__cdecl__)) ecvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) fcvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) ecvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) dtoa (double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) rand_r (unsigned *__seed); double __attribute__((__cdecl__)) drand48 (void); double __attribute__((__cdecl__)) _drand48_r (struct _reent *); double __attribute__((__cdecl__)) erand48 (unsigned short [3]); double __attribute__((__cdecl__)) _erand48_r (struct _reent *, unsigned short [3]); long __attribute__((__cdecl__)) jrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _jrand48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) lcong48 (unsigned short [7]); void __attribute__((__cdecl__)) _lcong48_r (struct _reent *, unsigned short [7]); long __attribute__((__cdecl__)) lrand48 (void); long __attribute__((__cdecl__)) _lrand48_r (struct _reent *); long __attribute__((__cdecl__)) mrand48 (void); long __attribute__((__cdecl__)) _mrand48_r (struct _reent *); long __attribute__((__cdecl__)) nrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _nrand48_r (struct _reent *, unsigned short [3]); unsigned short * __attribute__((__cdecl__)) seed48 (unsigned short [3]); unsigned short * __attribute__((__cdecl__)) _seed48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) srand48 (long); void __attribute__((__cdecl__)) _srand48_r (struct _reent *, long); long long __attribute__((__cdecl__)) atoll (const char *__nptr); long long __attribute__((__cdecl__)) _atoll_r (struct _reent *, const char *__nptr); long long __attribute__((__cdecl__)) llabs (long long); lldiv_t __attribute__((__cdecl__)) lldiv (long long __numer, long long __denom); long long __attribute__((__cdecl__)) strtoll (const char *__restrict __n, char **__restrict __end_PTR, int __base); long long __attribute__((__cdecl__)) _strtoll_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); # 221 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); extern long double strtold (const char *__restrict, char **__restrict); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 14 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 15 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 5 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 16 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 24 "/usr/include/sched.h" 3 4 # 1 "/usr/include/sys/sched.h" 1 3 4 # 46 "/usr/include/sys/sched.h" 3 4 struct sched_param { int sched_priority; # 59 "/usr/include/sys/sched.h" 3 4 }; # 25 "/usr/include/sched.h" 2 3 4 # 34 "/usr/include/sched.h" 3 4 int sched_setparam( pid_t __pid, const struct sched_param *__param ); int sched_getparam( pid_t __pid, struct sched_param *__param ); int sched_setscheduler( pid_t __pid, int __policy, const struct sched_param *__param ); int sched_getscheduler( pid_t __pid ); int sched_get_priority_max( int __policy ); int sched_get_priority_min( int __policy ); int sched_rr_get_interval( pid_t __pid, struct timespec *__interval ); int sched_yield( void ); # 17 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 11 "/usr/include/time.h" 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char *__restrict _s, size_t _maxsize, const char *__restrict _fmt, const struct tm *__restrict _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *__restrict, char *__restrict) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *__restrict, struct tm *__restrict) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *__restrict, struct tm *__restrict) ; char *__attribute__((__cdecl__)) strptime (const char *__restrict, const char *__restrict, struct tm *__restrict) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 159 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent *__restrict evp, timer_t *__restrict timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec *__restrict value, struct itimerspec *__restrict ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 18 "/usr/include/pthread.h" 2 3 4 # 67 "/usr/include/pthread.h" 3 4 int pthread_atfork (void (*)(void), void (*)(void), void (*)(void)); int pthread_attr_destroy (pthread_attr_t *); int pthread_attr_getdetachstate (const pthread_attr_t *, int *); int pthread_attr_getguardsize (const pthread_attr_t *, size_t *); int pthread_attr_getinheritsched (const pthread_attr_t *, int *); int pthread_attr_getschedparam (const pthread_attr_t *, struct sched_param *); int pthread_attr_getschedpolicy (const pthread_attr_t *, int *); int pthread_attr_getscope (const pthread_attr_t *, int *); int pthread_attr_getstack (const pthread_attr_t *, void **, size_t *); int pthread_attr_getstackaddr (const pthread_attr_t *, void **) __attribute__ ((__deprecated__)); int pthread_attr_init (pthread_attr_t *); int pthread_attr_setdetachstate (pthread_attr_t *, int); int pthread_attr_setguardsize (pthread_attr_t *, size_t); int pthread_attr_setinheritsched (pthread_attr_t *, int); int pthread_attr_setschedparam (pthread_attr_t *, const struct sched_param *); int pthread_attr_setschedpolicy (pthread_attr_t *, int); int pthread_attr_setscope (pthread_attr_t *, int); int pthread_attr_setstack (pthread_attr_t *, void *, size_t); int pthread_attr_setstackaddr (pthread_attr_t *, void *) __attribute__ ((__deprecated__)); int pthread_attr_getstacksize (const pthread_attr_t *, size_t *); int pthread_attr_setstacksize (pthread_attr_t *, size_t); int pthread_cancel (pthread_t); typedef void (*__cleanup_routine_type) (void *); typedef struct _pthread_cleanup_handler { __cleanup_routine_type function; void *arg; struct _pthread_cleanup_handler *next; } __pthread_cleanup_handler; void _pthread_cleanup_push (__pthread_cleanup_handler *handler); void _pthread_cleanup_pop (int execute); int pthread_cond_broadcast (pthread_cond_t *); int pthread_cond_destroy (pthread_cond_t *); int pthread_cond_init (pthread_cond_t *, const pthread_condattr_t *); int pthread_cond_signal (pthread_cond_t *); int pthread_cond_timedwait (pthread_cond_t *, pthread_mutex_t *, const struct timespec *); int pthread_cond_wait (pthread_cond_t *, pthread_mutex_t *); int pthread_condattr_destroy (pthread_condattr_t *); int pthread_condattr_getclock (const pthread_condattr_t *, clockid_t *); int pthread_condattr_getpshared (const pthread_condattr_t *, int *); int pthread_condattr_init (pthread_condattr_t *); int pthread_condattr_setclock (pthread_condattr_t *, clockid_t); int pthread_condattr_setpshared (pthread_condattr_t *, int); int pthread_create (pthread_t *, const pthread_attr_t *, void *(*)(void *), void *); int pthread_detach (pthread_t); int pthread_equal (pthread_t, pthread_t); void pthread_exit (void *) __attribute__ ((__noreturn__)); int pthread_getcpuclockid (pthread_t, clockid_t *); int pthread_getschedparam (pthread_t, int *, struct sched_param *); void *pthread_getspecific (pthread_key_t); int pthread_join (pthread_t, void **); int pthread_key_create (pthread_key_t *, void (*)(void *)); int pthread_key_delete (pthread_key_t); int pthread_mutex_destroy (pthread_mutex_t *); int pthread_mutex_getprioceiling (const pthread_mutex_t *, int *); int pthread_mutex_init (pthread_mutex_t *, const pthread_mutexattr_t *); int pthread_mutex_lock (pthread_mutex_t *); int pthread_mutex_setprioceiling (pthread_mutex_t *, int, int *); int pthread_mutex_trylock (pthread_mutex_t *); int pthread_mutex_unlock (pthread_mutex_t *); int pthread_mutexattr_destroy (pthread_mutexattr_t *); int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t *, int *); int pthread_mutexattr_getprotocol (const pthread_mutexattr_t *, int *); int pthread_mutexattr_getpshared (const pthread_mutexattr_t *, int *); int pthread_mutexattr_gettype (const pthread_mutexattr_t *, int *); int pthread_mutexattr_init (pthread_mutexattr_t *); int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *, int); int pthread_mutexattr_setprotocol (pthread_mutexattr_t *, int); int pthread_mutexattr_setpshared (pthread_mutexattr_t *, int); int pthread_mutexattr_settype (pthread_mutexattr_t *, int); int pthread_spin_destroy (pthread_spinlock_t *); int pthread_spin_init (pthread_spinlock_t *, int); int pthread_spin_lock (pthread_spinlock_t *); int pthread_spin_trylock (pthread_spinlock_t *); int pthread_spin_unlock (pthread_spinlock_t *); int pthread_rwlock_destroy (pthread_rwlock_t *rwlock); int pthread_rwlock_init (pthread_rwlock_t *rwlock, const pthread_rwlockattr_t *attr); int pthread_rwlock_rdlock (pthread_rwlock_t *rwlock); int pthread_rwlock_tryrdlock (pthread_rwlock_t *rwlock); int pthread_rwlock_wrlock (pthread_rwlock_t *rwlock); int pthread_rwlock_trywrlock (pthread_rwlock_t *rwlock); int pthread_rwlock_unlock (pthread_rwlock_t *rwlock); int pthread_rwlockattr_init (pthread_rwlockattr_t *rwlockattr); int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t *attr, int *pshared); int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *attr, int pshared); int pthread_rwlockattr_destroy (pthread_rwlockattr_t *rwlockattr); int pthread_once (pthread_once_t *, void (*)(void)); int pthread_getconcurrency (void); int pthread_setconcurrency (int); pthread_t pthread_self (void); int pthread_setcancelstate (int, int *); int pthread_setcanceltype (int, int *); int pthread_setschedparam (pthread_t, int, const struct sched_param *); int pthread_setschedprio (pthread_t, int); int pthread_setspecific (pthread_key_t, const void *); void pthread_testcancel (void); int pthread_getattr_np (pthread_t, pthread_attr_t *); int pthread_sigqueue (pthread_t *, int, const union sigval); int pthread_suspend (pthread_t); int pthread_continue (pthread_t); int pthread_yield (void); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 9 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 10 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/machine/setjmp.h" 1 3 4 # 336 "/usr/include/machine/setjmp.h" 3 4 typedef long jmp_buf[32]; # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 9 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 10 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 12 "/usr/include/sys/signal.h" 2 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 346 "/usr/include/machine/setjmp.h" 2 3 4 typedef long sigjmp_buf[32 +1+((sizeof (long) + sizeof (sigset_t) - 1) /sizeof (long))]; # 409 "/usr/include/machine/setjmp.h" 3 4 extern void _longjmp(jmp_buf, int); extern int _setjmp(jmp_buf); # 11 "/usr/include/setjmp.h" 2 3 4 void __attribute__((__cdecl__)) longjmp (jmp_buf __jmpb, int __retval) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) setjmp (jmp_buf __jmpb); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 18 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[20]; char nodename[20]; char release[20]; char version[20]; char machine[20]; }; int uname (struct utsname *); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 4 "/usr/include/machine/endian.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 14 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 9 "/usr/include/machine/_default_types.h" 2 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 15 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 16 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 14 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 1 "/usr/include/sys/_default_fcntl.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/_default_fcntl.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 9 "/usr/include/sys/_default_fcntl.h" 2 3 4 # 175 "/usr/include/sys/_default_fcntl.h" 3 4 struct eflock { short l_type; short l_whence; long l_start; long l_len; short l_pid; short l_xxx; long l_rpid; long l_rsys; }; # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 188 "/usr/include/sys/_default_fcntl.h" 2 3 4 # 1 "/usr/include/sys/stat.h" 1 3 4 # 9 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char * _s, size_t _maxsize, const char * _fmt, const struct tm * _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *, char *) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *, struct tm *) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *, struct tm *) ; char *__attribute__((__cdecl__)) strptime (const char *, const char *, struct tm *) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent * evp, timer_t * timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec * value, struct itimerspec * ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 10 "/usr/include/sys/stat.h" 2 3 4 # 21 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/cygwin/stat.h" 1 3 4 # 19 "/usr/include/cygwin/stat.h" 3 4 struct stat { dev_t st_dev; ino_t st_ino; mode_t st_mode; nlink_t st_nlink; uid_t st_uid; gid_t st_gid; dev_t st_rdev; off_t st_size; timestruc_t st_atim; timestruc_t st_mtim; timestruc_t st_ctim; blksize_t st_blksize; blkcnt_t st_blocks; timestruc_t st_birthtim; }; # 22 "/usr/include/sys/stat.h" 2 3 4 # 146 "/usr/include/sys/stat.h" 3 4 int __attribute__((__cdecl__)) chmod ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) fchmod (int __fd, mode_t __mode); int __attribute__((__cdecl__)) fstat ( int __fd, struct stat *__sbuf ); int __attribute__((__cdecl__)) mkdir ( const char *_path, mode_t __mode ); int __attribute__((__cdecl__)) mkfifo ( const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) stat ( const char * __path, struct stat * __sbuf ); mode_t __attribute__((__cdecl__)) umask ( mode_t __mask ); int __attribute__((__cdecl__)) lstat ( const char * __path, struct stat * __buf ); int __attribute__((__cdecl__)) mknod ( const char *__path, mode_t __mode, dev_t __dev ); int __attribute__((__cdecl__)) fchmodat (int, const char *, mode_t, int); int __attribute__((__cdecl__)) fstatat (int, const char * , struct stat *, int); int __attribute__((__cdecl__)) mkdirat (int, const char *, mode_t); int __attribute__((__cdecl__)) mkfifoat (int, const char *, mode_t); int __attribute__((__cdecl__)) mknodat (int, const char *, mode_t, dev_t); int __attribute__((__cdecl__)) utimensat (int, const char *, const struct timespec *, int); int __attribute__((__cdecl__)) futimens (int, const struct timespec *); # 189 "/usr/include/sys/_default_fcntl.h" 2 3 4 extern int open (const char *, int, ...); extern int openat (int, const char *, int, ...); extern int creat (const char *, mode_t); extern int fcntl (int, int, ...); extern int flock (int, int); # 1 "/usr/include/sys/time.h" 1 3 4 # 17 "/usr/include/sys/time.h" 3 4 struct timeval { time_t tv_sec; suseconds_t tv_usec; }; # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 1 "/usr/include/cygwin/sys_time.h" 1 3 4 # 13 "/usr/include/cygwin/sys_time.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 23 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/select.h" 2 3 4 int select (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, struct timeval *__timeout) ; int pselect (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, const struct timespec *__timeout, const sigset_t *__set) ; # 14 "/usr/include/cygwin/sys_time.h" 2 3 4 int futimes (int, const struct timeval *); int lutimes (const char *, const struct timeval *); # 62 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; int __attribute__((__cdecl__)) gettimeofday (struct timeval * __p, void * __tz) ; int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) adjtime (const struct timeval *, struct timeval *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval * __value, struct itimerval * __ovalue) ; # 201 "/usr/include/sys/_default_fcntl.h" 2 3 4 extern int futimesat (int, const char *, const struct timeval *); # 4 "/usr/include/sys/fcntl.h" 2 3 4 # 15 "/usr/include/fcntl.h" 2 3 4 # 62 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int, off_t, off_t, int); extern int posix_fallocate (int, off_t, off_t); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 10 "/usr/include/string.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 11 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 13 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 18 "/usr/include/string.h" 2 3 4 void * __attribute__((__cdecl__)) memchr (const void *, int, size_t); int __attribute__((__cdecl__)) memcmp (const void *, const void *, size_t); void * __attribute__((__cdecl__)) memcpy (void * , const void * , size_t); void * __attribute__((__cdecl__)) memmove (void *, const void *, size_t); void * __attribute__((__cdecl__)) memset (void *, int, size_t); char *__attribute__((__cdecl__)) strcat (char *, const char *); char *__attribute__((__cdecl__)) strchr (const char *, int); int __attribute__((__cdecl__)) strcmp (const char *, const char *); int __attribute__((__cdecl__)) strcoll (const char *, const char *); char *__attribute__((__cdecl__)) strcpy (char *, const char *); size_t __attribute__((__cdecl__)) strcspn (const char *, const char *); char *__attribute__((__cdecl__)) strerror (int); size_t __attribute__((__cdecl__)) strlen (const char *); char *__attribute__((__cdecl__)) strncat (char *, const char *, size_t); int __attribute__((__cdecl__)) strncmp (const char *, const char *, size_t); char *__attribute__((__cdecl__)) strncpy (char *, const char *, size_t); char *__attribute__((__cdecl__)) strpbrk (const char *, const char *); char *__attribute__((__cdecl__)) strrchr (const char *, int); size_t __attribute__((__cdecl__)) strspn (const char *, const char *); char *__attribute__((__cdecl__)) strstr (const char *, const char *); char *__attribute__((__cdecl__)) strtok (char *, const char *); size_t __attribute__((__cdecl__)) strxfrm (char *, const char *, size_t); char *__attribute__((__cdecl__)) strtok_r (char *, const char *, char **); int __attribute__((__cdecl__)) bcmp (const void *, const void *, size_t); void __attribute__((__cdecl__)) bcopy (const void *, void *, size_t); void __attribute__((__cdecl__)) bzero (void *, size_t); int __attribute__((__cdecl__)) ffs (int); char *__attribute__((__cdecl__)) index (const char *, int); void * __attribute__((__cdecl__)) memccpy (void * , const void * , int, size_t); void * __attribute__((__cdecl__)) mempcpy (void *, const void *, size_t); void * __attribute__((__cdecl__)) memmem (const void *, size_t, const void *, size_t); void * __attribute__((__cdecl__)) memrchr (const void *, int, size_t); void * __attribute__((__cdecl__)) rawmemchr (const void *, int); char *__attribute__((__cdecl__)) rindex (const char *, int); char *__attribute__((__cdecl__)) stpcpy (char *, const char *); char *__attribute__((__cdecl__)) stpncpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strcasecmp (const char *, const char *); char *__attribute__((__cdecl__)) strcasestr (const char *, const char *); char *__attribute__((__cdecl__)) strchrnul (const char *, int); char *__attribute__((__cdecl__)) strdup (const char *); char *__attribute__((__cdecl__)) _strdup_r (struct _reent *, const char *); char *__attribute__((__cdecl__)) strndup (const char *, size_t); char *__attribute__((__cdecl__)) _strndup_r (struct _reent *, const char *, size_t); # 87 "/usr/include/string.h" 3 4 int __attribute__((__cdecl__)) strerror_r (int, char *, size_t) __asm__ ("" "__xpg_strerror_r"); size_t __attribute__((__cdecl__)) strlcat (char *, const char *, size_t); size_t __attribute__((__cdecl__)) strlcpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); char * __attribute__((__cdecl__)) _strerror_r (struct _reent *, int, int, int *); # 140 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/string.h" 1 3 4 # 141 "/usr/include/string.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 8 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 9 "/usr/include/sys/times.h" 2 3 4 typedef unsigned long clock_t; struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t __attribute__((__cdecl__)) times (struct tms *); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/io.h" 1 3 4 # 21 "/usr/include/io.h" 3 4 extern long _get_osfhandle(int); extern int _setmode (int __fd, int __mode); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_IO_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 42 "/usr/include/pwd.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 9 "/usr/include/machine/_default_types.h" 2 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 43 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 44 "/usr/include/pwd.h" 2 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; char *pw_comment; char *pw_gecos; char *pw_dir; char *pw_shell; }; struct passwd *getpwuid (uid_t); struct passwd *getpwnam (const char *); int getpwnam_r (const char *, struct passwd *, char *, size_t , struct passwd **); int getpwuid_r (uid_t, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent (void); void setpwent (void); void endpwent (void); int setpassent (int); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/float.h" 1 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 13 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 14 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 14 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 15 "/usr/include/features.h" 2 3 4 # 15 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/limits.h" 2 3 4 # 16 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 19 "/usr/include/sys/param.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 66 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/inttypes.h" 1 3 4 # 14 "/usr/include/inttypes.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 15 "/usr/include/inttypes.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 17 "/usr/include/inttypes.h" 2 3 4 # 256 "/usr/include/inttypes.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 257 "/usr/include/inttypes.h" 2 3 4 typedef struct { intmax_t quot; intmax_t rem; } imaxdiv_t; intmax_t __attribute__((__cdecl__)) imaxabs (intmax_t); imaxdiv_t __attribute__((__cdecl__)) imaxdiv (intmax_t, intmax_t); intmax_t __attribute__((__cdecl__)) strtoimax (const char *, char **, int); uintmax_t __attribute__((__cdecl__)) strtoumax (const char *, char **, int); intmax_t __attribute__((__cdecl__)) wcstoimax (const wchar_t *, wchar_t **, int); uintmax_t __attribute__((__cdecl__)) wcstoumax (const wchar_t *, wchar_t **, int); # 67 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 15 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 14 "/usr/include/features.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 15 "/usr/include/features.h" 2 3 4 # 16 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 24 "/usr/include/cygwin/socket.h" 3 4 typedef int socklen_t; typedef uint16_t sa_family_t; struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 43 "/usr/include/cygwin/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char _ss_pad1[((sizeof (int64_t)) - sizeof (sa_family_t))]; int64_t __ss_align; char _ss_pad2[(128 - (sizeof (sa_family_t) + ((sizeof (int64_t)) - sizeof (sa_family_t)) + (sizeof (int64_t))))]; }; # 1 "/usr/include/asm/socket.h" 1 3 4 # 14 "/usr/include/asm/socket.h" 3 4 # 1 "/usr/include/cygwin/if.h" 1 3 4 # 18 "/usr/include/cygwin/if.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 21 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 19 "/usr/include/cygwin/if.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 20 "/usr/include/cygwin/if.h" 2 3 4 # 34 "/usr/include/cygwin/if.h" 3 4 struct if_nameindex { unsigned if_index; char *if_name; }; struct ifreq_frndlyname { int ifrf_len; char ifrf_friendlyname[260]; }; # 59 "/usr/include/cygwin/if.h" 3 4 struct ifreq { union { char ifrn_name[44]; } ifr_ifrn; union { struct sockaddr ifru_addr; struct sockaddr ifru_broadaddr; struct sockaddr ifru_dstaddr; struct sockaddr ifru_netmask; struct sockaddr ifru_hwaddr; int ifru_flags; int ifru_metric; int ifru_mtu; int ifru_ifindex; void *ifru_data; char __ifru_pad[28]; } ifr_ifru; }; # 101 "/usr/include/cygwin/if.h" 3 4 struct ifconf { int ifc_len; union { caddr_t ifcu_buf; struct ifreq *ifcu_req; } ifc_ifcu; }; extern unsigned if_nametoindex (const char *); extern char *if_indextoname (unsigned, char *); extern struct if_nameindex *if_nameindex (void); extern void if_freenameindex (struct if_nameindex *); # 15 "/usr/include/asm/socket.h" 2 3 4 # 52 "/usr/include/cygwin/socket.h" 2 3 4 # 1 "/usr/include/cygwin/sockios.h" 1 3 4 # 53 "/usr/include/cygwin/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 15 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/sys/uio.h" 2 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t readv (int filedes, const struct iovec *vector, int count); extern ssize_t writev (int filedes, const struct iovec *vector, int count); # 54 "/usr/include/cygwin/socket.h" 2 3 4 struct ucred { pid_t pid; uid_t uid; gid_t gid; }; struct linger { unsigned short l_onoff; unsigned short l_linger; }; struct msghdr { void * msg_name; socklen_t msg_namelen; struct iovec * msg_iov; int msg_iovlen; void * msg_control; socklen_t msg_controllen; int msg_flags; }; struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 17 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 17 "/usr/include/sys/time.h" 3 4 struct timeval { time_t tv_sec; suseconds_t tv_usec; }; # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 1 "/usr/include/cygwin/sys_time.h" 1 3 4 # 13 "/usr/include/cygwin/sys_time.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 23 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char * _s, size_t _maxsize, const char * _fmt, const struct tm * _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *, char *) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *, struct tm *) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *, struct tm *) ; char *__attribute__((__cdecl__)) strptime (const char *, const char *, struct tm *) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent * evp, timer_t * timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec * value, struct itimerspec * ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 25 "/usr/include/sys/select.h" 2 3 4 int select (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, struct timeval *__timeout) ; int pselect (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, const struct timespec *__timeout, const sigset_t *__set) ; # 14 "/usr/include/cygwin/sys_time.h" 2 3 4 int futimes (int, const struct timeval *); int lutimes (const char *, const struct timeval *); # 62 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; int __attribute__((__cdecl__)) gettimeofday (struct timeval * __p, void * __tz) ; int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) adjtime (const struct timeval *, struct timeval *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval * __value, struct itimerval * __ovalue) ; # 18 "/usr/include/sys/socket.h" 2 3 4 int accept (int, struct sockaddr *__peer, socklen_t *); int accept4 (int, struct sockaddr *__peer, socklen_t *, int flags); int bind (int, const struct sockaddr *__my_addr, socklen_t __addrlen); int connect (int, const struct sockaddr *, socklen_t); int getpeername (int, struct sockaddr *__peer, socklen_t *); int getsockname (int, struct sockaddr *__addr, socklen_t *); int listen (int, int __n); ssize_t recv (int, void *__buff, size_t __len, int __flags); ssize_t recvfrom (int, void *__buff, size_t __len, int __flags, struct sockaddr *__from, socklen_t *__fromlen); ssize_t recvmsg(int s, struct msghdr *msg, int flags); ssize_t send (int, const void *__buff, size_t __len, int __flags); ssize_t sendmsg(int s, const struct msghdr *msg, int flags); ssize_t sendto (int, const void *, size_t __len, int __flags, const struct sockaddr *__to, socklen_t __tolen); int setsockopt (int __s, int __level, int __optname, const void *optval, socklen_t __optlen); int getsockopt (int __s, int __level, int __optname, void *__optval, socklen_t *__optlen); int shutdown (int, int); int socket (int __family, int __type, int __protocol); int socketpair (int __domain, int __type, int __protocol, int *__socket_vec); struct servent *getservbyname (const char *__name, const char *__proto); # 68 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 23 "/usr/include/cygwin/in.h" 3 4 typedef uint16_t in_port_t; typedef uint32_t in_addr_t; enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 9 "/usr/include/machine/_default_types.h" 2 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 14 "/usr/include/search.h" 2 3 4 typedef struct entry { char *key; void *data; } ENTRY; typedef enum { FIND, ENTER } ACTION; typedef enum { preorder, postorder, endorder, leaf } VISIT; # 42 "/usr/include/search.h" 3 4 struct hsearch_data { struct internal_head *htable; size_t htablesize; }; struct qelem { struct qelem *q_forw; struct qelem *q_back; }; int hcreate (size_t); void hdestroy (void); ENTRY *hsearch (ENTRY, ACTION); int hcreate_r (size_t, struct hsearch_data *); void hdestroy_r (struct hsearch_data *); int hsearch_r (ENTRY, ACTION, ENTRY **, struct hsearch_data *); void *tdelete (const void * , void ** , int (*) (const void *, const void *)); void tdestroy (void *, void (*)(void *)); void *tfind (const void *, void **, int (*) (const void *, const void *)); void *tsearch (const void *, void **, int (*) (const void *, const void *)); void twalk (const void *, void (*) (const void *, VISIT, int)); void *lfind (const void *, const void *, size_t *, size_t, int (*) (const void *, const void *)); void *lsearch (const void *, void *, size_t *, size_t, int (*) (const void *, const void *)); void insque (void *, void *); void remque (void *); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 16 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/cygwin/core_dump.h" 1 3 4 # 16 "/usr/include/cygwin/core_dump.h" 3 4 # 1 "/usr/include/w32api/windows.h" 1 3 4 # 9 "/usr/include/w32api/windows.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 12 "/usr/include/w32api/_mingw.h" 3 4 # 1 "/usr/include/w32api/_mingw_mac.h" 1 3 4 # 13 "/usr/include/w32api/_mingw.h" 2 3 4 # 1 "/usr/include/w32api/_mingw_secapi.h" 1 3 4 # 14 "/usr/include/w32api/_mingw.h" 2 3 4 # 1 "/usr/include/w32api/_cygwin.h" 1 3 4 # 14 "/usr/include/w32api/_cygwin.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 15 "/usr/include/w32api/_cygwin.h" 2 3 4 # 18 "/usr/include/w32api/_mingw.h" 2 3 4 # 282 "/usr/include/w32api/_mingw.h" 3 4 # 1 "/usr/include/w32api/vadefs.h" 1 3 4 # 9 "/usr/include/w32api/vadefs.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 686 "/usr/include/w32api/_mingw.h" 3 4 # 1 "/usr/include/w32api/sdks/_mingw_directx.h" 1 3 4 # 687 "/usr/include/w32api/_mingw.h" 2 3 4 # 1 "/usr/include/w32api/sdks/_mingw_ddk.h" 1 3 4 # 688 "/usr/include/w32api/_mingw.h" 2 3 4 # 10 "/usr/include/w32api/vadefs.h" 2 3 4 #pragma pack(push,_CRT_PACKING) # 22 "/usr/include/w32api/vadefs.h" 3 4 typedef __builtin_va_list __gnuc_va_list; typedef __gnuc_va_list va_list; # 101 "/usr/include/w32api/vadefs.h" 3 4 #pragma pack(pop) # 283 "/usr/include/w32api/_mingw.h" 2 3 4 #pragma pack(push,_CRT_PACKING) # 463 "/usr/include/w32api/_mingw.h" 3 4 typedef int errno_t; typedef long __time32_t; __extension__ typedef long long __time64_t; # 656 "/usr/include/w32api/_mingw.h" 3 4 void __attribute__((__cdecl__)) __debugbreak(void); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __attribute__((__cdecl__)) __debugbreak(void) { __asm__ __volatile__("int {$}3":); } const char *__mingw_get_crt_info (void); #pragma pack(pop) # 10 "/usr/include/w32api/windows.h" 2 3 4 # 1 "/usr/include/w32api/sdkddkver.h" 1 3 4 # 11 "/usr/include/w32api/windows.h" 2 3 4 # 65 "/usr/include/w32api/windows.h" 3 4 # 1 "/usr/include/w32api/excpt.h" 1 3 4 # 9 "/usr/include/w32api/excpt.h" 3 4 # 1 "/usr/include/w32api/crtdefs.h" 1 3 4 # 10 "/usr/include/w32api/crtdefs.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 11 "/usr/include/w32api/crtdefs.h" 2 3 4 # 26 "/usr/include/w32api/crtdefs.h" 3 4 typedef size_t rsize_t; # 153 "/usr/include/w32api/crtdefs.h" 3 4 struct threadlocaleinfostruct; struct threadmbcinfostruct; typedef struct threadlocaleinfostruct *pthreadlocinfo; typedef struct threadmbcinfostruct *pthreadmbcinfo; struct __lc_time_data; typedef struct localeinfo_struct { pthreadlocinfo locinfo; pthreadmbcinfo mbcinfo; } _locale_tstruct,*_locale_t; typedef struct tagLC_ID { unsigned short wLanguage; unsigned short wCountry; unsigned short wCodePage; } LC_ID,*LPLC_ID; typedef struct threadlocaleinfostruct { int refcount; unsigned int lc_codepage; unsigned int lc_collate_cp; unsigned long lc_handle[6]; LC_ID lc_id[6]; struct { char *locale; wchar_t *wlocale; int *refcount; int *wrefcount; } lc_category[6]; int lc_clike; int mb_cur_max; int *lconv_intl_refcount; int *lconv_num_refcount; int *lconv_mon_refcount; struct lconv *lconv; int *ctype1_refcount; unsigned short *ctype1; const unsigned short *pctype; const unsigned char *pclmap; const unsigned char *pcumap; struct __lc_time_data *lc_time_curr; } threadlocinfo; # 10 "/usr/include/w32api/excpt.h" 2 3 4 #pragma pack(push,_CRT_PACKING) struct _EXCEPTION_POINTERS; # 43 "/usr/include/w32api/excpt.h" 3 4 struct _EXCEPTION_RECORD; struct _CONTEXT; # 54 "/usr/include/w32api/excpt.h" 3 4 unsigned long __attribute__((__cdecl__)) _exception_code(void); void *__attribute__((__cdecl__)) _exception_info(void); int __attribute__((__cdecl__)) _abnormal_termination(void); typedef void (__attribute__((__cdecl__)) * _PHNDLR)(int); struct _XCPT_ACTION { unsigned long XcptNum; int SigNum; _PHNDLR XcptAction; }; extern struct _XCPT_ACTION _XcptActTab[]; extern int _XcptActTabCount; extern int _XcptActTabSize; extern int _First_FPE_Indx; extern int _Num_FPE; int __attribute__((__cdecl__)) __CppXcptFilter(unsigned long _ExceptionNum,struct _EXCEPTION_POINTERS * _ExceptionPtr); int __attribute__((__cdecl__)) _XcptFilter(unsigned long _ExceptionNum,struct _EXCEPTION_POINTERS * _ExceptionPtr); typedef int (*PEXCEPTION_HANDLER)(struct _EXCEPTION_RECORD*, void*, struct _CONTEXT*, void*); # 128 "/usr/include/w32api/excpt.h" 3 4 #pragma pack(pop) # 66 "/usr/include/w32api/windows.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdarg.h" 1 3 4 # 67 "/usr/include/w32api/windows.h" 2 3 4 # 1 "/usr/include/w32api/windef.h" 1 3 4 # 1 "/usr/include/w32api/minwindef.h" 1 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 5 "/usr/include/w32api/minwindef.h" 2 3 4 # 1 "/usr/include/w32api/winapifamily.h" 1 3 4 # 6 "/usr/include/w32api/minwindef.h" 2 3 4 # 1 "/usr/include/w32api/specstrings.h" 1 3 4 # 1 "/usr/include/w32api/sal.h" 1 3 4 # 9 "/usr/include/w32api/specstrings.h" 2 3 4 # 7 "/usr/include/w32api/minwindef.h" 2 3 4 # 24 "/usr/include/w32api/minwindef.h" 3 4 typedef unsigned int ULONG; typedef ULONG *PULONG; typedef unsigned short USHORT; typedef USHORT *PUSHORT; typedef unsigned char UCHAR; typedef UCHAR *PUCHAR; typedef char *PSZ; # 110 "/usr/include/w32api/minwindef.h" 3 4 typedef int WINBOOL; typedef int BOOL; typedef WINBOOL *PBOOL; typedef WINBOOL *LPBOOL; typedef unsigned char BYTE; typedef unsigned short WORD; typedef unsigned int DWORD; typedef float FLOAT; typedef FLOAT *PFLOAT; typedef BYTE *PBYTE; typedef BYTE *LPBYTE; typedef int *PINT; typedef int *LPINT; typedef WORD *PWORD; typedef WORD *LPWORD; typedef int *LPLONG; typedef DWORD *PDWORD; typedef DWORD *LPDWORD; typedef void *LPVOID; typedef const void *LPCVOID; typedef int INT; typedef unsigned int UINT; typedef unsigned int *PUINT; # 1 "/usr/include/w32api/winnt.h" 1 3 4 # 9 "/usr/include/w32api/winnt.h" 3 4 # 1 "/usr/include/w32api/_mingw_unicode.h" 1 3 4 # 10 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 16 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/ctype.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 5 "/usr/include/ctype.h" 2 3 4 int __attribute__((__cdecl__)) isalnum (int __c); int __attribute__((__cdecl__)) isalpha (int __c); int __attribute__((__cdecl__)) iscntrl (int __c); int __attribute__((__cdecl__)) isdigit (int __c); int __attribute__((__cdecl__)) isgraph (int __c); int __attribute__((__cdecl__)) islower (int __c); int __attribute__((__cdecl__)) isprint (int __c); int __attribute__((__cdecl__)) ispunct (int __c); int __attribute__((__cdecl__)) isspace (int __c); int __attribute__((__cdecl__)) isupper (int __c); int __attribute__((__cdecl__)) isxdigit (int __c); int __attribute__((__cdecl__)) tolower (int __c); int __attribute__((__cdecl__)) toupper (int __c); int __attribute__((__cdecl__)) isblank (int __c); int __attribute__((__cdecl__)) isascii (int __c); int __attribute__((__cdecl__)) toascii (int __c); # 45 "/usr/include/ctype.h" 3 4 extern __attribute__((dllimport)) char *__ctype_ptr__; # 109 "/usr/include/ctype.h" 3 4 extern __attribute__((dllimport)) const char _ctype_[]; # 17 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/apiset.h" 1 3 4 # 9 "/usr/include/w32api/apiset.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 10 "/usr/include/w32api/apiset.h" 2 3 4 # 20 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/specstrings.h" 1 3 4 # 24 "/usr/include/w32api/winnt.h" 2 3 4 # 1 "/usr/include/w32api/psdk_inc/intrin-impl.h" 1 3 4 # 485 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 void __faststorefence(void); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __faststorefence(void) { __builtin_ia32_sfence(); } __extension__ void __stosq(unsigned long long *, unsigned long long, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosq(unsigned long long *Dest, unsigned long long Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "q" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } __extension__ unsigned char _interlockedbittestandset64(long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandset64( long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char _interlockedbittestandreset64(long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandreset64( long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char _interlockedbittestandcomplement64(long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandcomplement64( long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char InterlockedBitTestAndSet64(volatile long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndSet64(volatile long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char InterlockedBitTestAndReset64(volatile long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndReset64(volatile long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ unsigned char InterlockedBitTestAndComplement64(volatile long long *a, long long b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndComplement64(volatile long long *Base, long long Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "J" "r" (Offset) : "memory", "cc"); return old; } __extension__ long long _InterlockedAnd64(long long volatile *, long long); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedAnd64(volatile long long *Destination, long long Value) { return __sync_fetch_and_and(Destination, Value); } __extension__ long long _InterlockedOr64(long long volatile *, long long); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedOr64(volatile long long *Destination, long long Value) { return __sync_fetch_and_or(Destination, Value); } __extension__ long long _InterlockedXor64(long long volatile *, long long); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedXor64(volatile long long *Destination, long long Value) { return __sync_fetch_and_xor(Destination, Value); } __extension__ long long _InterlockedIncrement64(long long volatile *Addend); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedIncrement64(long long volatile *Addend) { return __sync_add_and_fetch(Addend, 1); } __extension__ long long _InterlockedDecrement64(long long volatile *Addend); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedDecrement64(long long volatile *Addend) { return __sync_sub_and_fetch(Addend, 1); } __extension__ long long _InterlockedExchange64(long long volatile *Target, long long Value); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedExchange64(long long volatile *Target, long long Value) { return __sync_lock_test_and_set(Target, Value); } __extension__ long long _InterlockedExchangeAdd64(long long volatile *Addend, long long Value); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedExchangeAdd64(long long volatile *Addend, long long Value) { return __sync_fetch_and_add(Addend, Value); } unsigned char __readgsbyte(unsigned int Offset); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char __readgsbyte(unsigned int Offset) { unsigned char ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned char *) (size_t) Offset))); return ret; } unsigned short __readgsword(unsigned int Offset); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned short __readgsword(unsigned int Offset) { unsigned short ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned short *) (size_t) Offset))); return ret; } unsigned int __readgsdword(unsigned int Offset); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned int __readgsdword(unsigned int Offset) { unsigned int ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned int *) (size_t) Offset))); return ret; } __extension__ unsigned long long __readgsqword(unsigned int Offset); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned long long __readgsqword(unsigned int Offset) { unsigned long long ret; __asm__ ("mov{%z[ret] %%" "gs" ":%[offset], %[ret] | %[ret], %%" "gs" ":%[offset]}" : [ret] "=r" (ret) : [offset] "m" ((*(unsigned long long *) (size_t) Offset))); return ret; } void __writegsbyte(unsigned int Offset,unsigned char Data); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsbyte(unsigned int Offset, unsigned char Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned char *) (size_t) Offset)) : [Data] "ri" (Data)); } void __writegsword(unsigned int Offset,unsigned short Data); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsword(unsigned int Offset, unsigned short Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned short *) (size_t) Offset)) : [Data] "ri" (Data)); } void __writegsdword(unsigned int Offset,unsigned int Data); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsdword(unsigned int Offset, unsigned int Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned int *) (size_t) Offset)) : [Data] "ri" (Data)); } __extension__ void __writegsqword(unsigned int Offset,unsigned long long Data); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __writegsqword(unsigned int Offset, unsigned long long Data) { __asm__ ("mov{%z[offset] %[Data], %%" "gs" ":%[offset] | %%" "gs" ":%[offset], %[Data]}" : [offset] "=m" ((*(unsigned long long *) (size_t) Offset)) : [Data] "ri" (Data)); } __extension__ unsigned char _BitScanForward64(unsigned int *Index, unsigned long long Mask); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanForward64(unsigned int *Index, unsigned long long Mask) { unsigned long long n; __asm__ ("bsf" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } __extension__ unsigned char _BitScanReverse64(unsigned int *Index, unsigned long long Mask); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanReverse64(unsigned int *Index, unsigned long long Mask) { unsigned long long n; __asm__ ("bsr" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } __extension__ unsigned char _bittest64(long long const *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittest64(const long long *Base, long long Offset) { unsigned char old; __asm__ ("bt{%z[Base] %[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=rm" (old) : [Offset] "J" "r" (Offset), [Base] "rm" (*Base) : "cc"); return old; } __extension__ unsigned char _bittestandset64(long long *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandset64(long long *Base, long long Offset) { unsigned char old; __asm__ ("bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "J" "r" (Offset) : "cc"); return old; } __extension__ unsigned char _bittestandreset64(long long *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandreset64(long long *Base, long long Offset) { unsigned char old; __asm__ ("btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "J" "r" (Offset) : "cc"); return old; } __extension__ unsigned char _bittestandcomplement64(long long *a, long long b); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandcomplement64(long long *Base, long long Offset) { unsigned char old; __asm__ ("btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "J" "r" (Offset) : "cc"); return old; } # 763 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 __extension__ void __movsq(unsigned long long *Dest, unsigned long long const *Source, size_t Count); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsq(unsigned long long *Destination, unsigned long long const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "q" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } # 838 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 void __int2c(void); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __int2c(void) { __asm__ __volatile__("int {$}" "0x2c" :); } void __stosb(unsigned char *, unsigned char, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosb(unsigned char *Dest, unsigned char Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "b" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } void __stosw(unsigned short *, unsigned short, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosw(unsigned short *Dest, unsigned short Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "w" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } void __stosd(unsigned int *, unsigned int, size_t); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __stosd(unsigned int *Dest, unsigned int Data, size_t Count) { __asm__ __volatile__ ("rep stos{%z[Data]|" "d" "}" : "+D" (Dest), "+c" (Count) : [Data] "a" (Data) : "memory"); } unsigned char _interlockedbittestandset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandset( int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char _interlockedbittestandreset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandreset( int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char _interlockedbittestandcomplement(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _interlockedbittestandcomplement( int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char InterlockedBitTestAndSet(volatile int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndSet(volatile int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char InterlockedBitTestAndReset(volatile int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndReset(volatile int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } unsigned char InterlockedBitTestAndComplement(volatile int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char InterlockedBitTestAndComplement(volatile int *Base, int Offset) { unsigned char old; __asm__ __volatile__ ("lock btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=qm" (old), [Base] "+m" (*Base) : [Offset] "I" "r" (Offset) : "memory", "cc"); return old; } int _InterlockedAnd(int volatile *, int); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedAnd(volatile int *Destination, int Value) { return __sync_fetch_and_and(Destination, Value); } int _InterlockedOr(int volatile *, int); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedOr(volatile int *Destination, int Value) { return __sync_fetch_and_or(Destination, Value); } int _InterlockedXor(int volatile *, int); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedXor(volatile int *Destination, int Value) { return __sync_fetch_and_xor(Destination, Value); } short _InterlockedIncrement16(short volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) short _InterlockedIncrement16(short volatile *Addend) { return __sync_add_and_fetch(Addend, 1); } short _InterlockedDecrement16(short volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) short _InterlockedDecrement16(short volatile *Addend) { return __sync_sub_and_fetch(Addend, 1); } short _InterlockedCompareExchange16(short volatile *Destination, short ExChange, short Comperand); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) short _InterlockedCompareExchange16(short volatile *Destination, short ExChange, short Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } int _InterlockedExchangeAdd(int volatile *Addend, int Value); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedExchangeAdd(int volatile *Addend, int Value) { return __sync_fetch_and_add(Addend, Value); } int _InterlockedCompareExchange(int volatile *Destination, int ExChange, int Comperand); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedCompareExchange(int volatile *Destination, int ExChange, int Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } int _InterlockedIncrement(int volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedIncrement(int volatile *Addend) { return __sync_add_and_fetch(Addend, 1); } int _InterlockedDecrement(int volatile *Addend); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedDecrement(int volatile *Addend) { return __sync_sub_and_fetch(Addend, 1); } int _InterlockedExchange(int volatile *Target, int Value); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) int _InterlockedExchange(int volatile *Target, int Value) { return __sync_lock_test_and_set(Target, Value); } __extension__ long long _InterlockedCompareExchange64(long long volatile *Destination, long long ExChange, long long Comperand); __extension__ extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) long long _InterlockedCompareExchange64(long long volatile *Destination, long long ExChange, long long Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } void *_InterlockedCompareExchangePointer(void * volatile *Destination, void *ExChange, void *Comperand); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void *_InterlockedCompareExchangePointer(void *volatile *Destination, void *ExChange, void *Comperand) { return __sync_val_compare_and_swap(Destination, Comperand, ExChange); } void *_InterlockedExchangePointer(void *volatile *Target,void *Value); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void *_InterlockedExchangePointer(void *volatile *Target,void *Value) { return __sync_lock_test_and_set(Target, Value); } unsigned char _BitScanForward(unsigned int *Index, unsigned int Mask); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanForward(unsigned int *Index, unsigned int Mask) { unsigned int n; __asm__ ("bsf" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } unsigned char _BitScanReverse(unsigned int *Index, unsigned int Mask); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _BitScanReverse(unsigned int *Index, unsigned int Mask) { unsigned int n; __asm__ ("bsr" "{%z[Mask] %[Mask],%[Index] | %[Index],%[Mask]}" : [Index] "=r" (n) : [Mask] "r" (Mask) : "cc"); *Index = n; return Mask!=0; } unsigned char _bittest(int const *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittest(const int *Base, int Offset) { unsigned char old; __asm__ ("bt{%z[Base] %[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=rm" (old) : [Offset] "I" "r" (Offset), [Base] "rm" (*Base) : "cc"); return old; } unsigned char _bittestandset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandset(int *Base, int Offset) { unsigned char old; __asm__ ("bts" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "I" "r" (Offset) : "cc"); return old; } unsigned char _bittestandreset(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandreset(int *Base, int Offset) { unsigned char old; __asm__ ("btr" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "I" "r" (Offset) : "cc"); return old; } unsigned char _bittestandcomplement(int *a, int b); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) unsigned char _bittestandcomplement(int *Base, int Offset) { unsigned char old; __asm__ ("btc" "%z[Base] {%[Offset],%[Base] | %[Base],%[Offset]} ; setc %[old]" : [old] "=r" (old), [Base] "+rm" (*Base) : [Offset] "I" "r" (Offset) : "cc"); return old; } # 1203 "/usr/include/w32api/psdk_inc/intrin-impl.h" 3 4 void __movsb(unsigned char *Destination, unsigned char const *Source, size_t Count); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsb(unsigned char *Destination, unsigned char const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "b" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } void __movsw(unsigned short *Dest, unsigned short const *Source, size_t Count); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsw(unsigned short *Destination, unsigned short const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "w" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } void __movsd(unsigned int *Dest, unsigned int const *Source, size_t Count); extern __inline__ __attribute__((__always_inline__,__gnu_inline__)) void __movsd(unsigned int *Destination, unsigned int const *Source, size_t Count) { __asm__ __volatile__ ( "rep movs" "d" : "=D" (Destination), "=S" (Source), "=c" (Count) : "0" (Destination), "1" (Source), "2" (Count) : "memory"); } # 27 "/usr/include/w32api/winnt.h" 2 3 4 # 134 "/usr/include/w32api/winnt.h" 3 4 # 1 "/usr/include/w32api/basetsd.h" 1 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 6 "/usr/include/w32api/basetsd.h" 2 3 4 __extension__ typedef unsigned long long POINTER_64_INT; # 29 "/usr/include/w32api/basetsd.h" 3 4 typedef signed char INT8,*PINT8; typedef signed short INT16,*PINT16; typedef signed int INT32,*PINT32; __extension__ typedef signed long long INT64,*PINT64; typedef unsigned char UINT8,*PUINT8; typedef unsigned short UINT16,*PUINT16; typedef unsigned int UINT32,*PUINT32; __extension__ typedef unsigned long long UINT64,*PUINT64; typedef signed int LONG32,*PLONG32; typedef unsigned int ULONG32,*PULONG32; typedef unsigned int DWORD32,*PDWORD32; __extension__ typedef long long INT_PTR,*PINT_PTR; __extension__ typedef unsigned long long UINT_PTR,*PUINT_PTR; __extension__ typedef long long LONG_PTR,*PLONG_PTR; __extension__ typedef unsigned long long ULONG_PTR,*PULONG_PTR; # 62 "/usr/include/w32api/basetsd.h" 3 4 __extension__ typedef long long SHANDLE_PTR; __extension__ typedef unsigned long long HANDLE_PTR; typedef unsigned int UHALF_PTR,*PUHALF_PTR; typedef int HALF_PTR,*PHALF_PTR; static __inline unsigned int HandleToULong (const void *h) { return ((unsigned int) (ULONG_PTR) h); } static __inline int HandleToLong (const void *h) { return ((int) (LONG_PTR) h); } static __inline void *ULongToHandle (const unsigned int h) { return ((void *) (UINT_PTR) h); } static __inline void *LongToHandle (const int h) { return ((void *) (INT_PTR) h); } static __inline unsigned int PtrToUlong (const void *p) { return ((unsigned int) (ULONG_PTR) p); } static __inline unsigned int PtrToUint (const void *p) { return ((unsigned int) (UINT_PTR) p); } static __inline unsigned short PtrToUshort (const void *p) { return ((unsigned short) (unsigned int) (ULONG_PTR) p); } static __inline int PtrToLong (const void *p) { return ((int) (LONG_PTR) p); } static __inline int PtrToInt (const void *p) { return ((int) (INT_PTR) p); } static __inline short PtrToShort (const void *p) { return ((short) (int) (LONG_PTR) p); } static __inline void *IntToPtr (const int i) { return ((void *) (INT_PTR)i); } static __inline void *UIntToPtr (const unsigned int ui) { return ((void *) (UINT_PTR)ui); } static __inline void *LongToPtr (const int l) { return ((void *) (LONG_PTR)l); } static __inline void *ULongToPtr (const unsigned int ul) { return ((void *) (ULONG_PTR)ul); } static __inline void *Ptr32ToPtr (const void * p) { return ((void *) (ULONG_PTR) (unsigned int) (ULONG_PTR) p); } static __inline void *Handle32ToHandle (const void * h) { return ((void *) (LONG_PTR) (int) (ULONG_PTR) h); } static __inline void * PtrToPtr32 (const void *p) { return ((void *) (ULONG_PTR) (unsigned int) (ULONG_PTR) p); } # 147 "/usr/include/w32api/basetsd.h" 3 4 __extension__ typedef ULONG_PTR SIZE_T,*PSIZE_T; __extension__ typedef LONG_PTR SSIZE_T,*PSSIZE_T; # 191 "/usr/include/w32api/basetsd.h" 3 4 __extension__ typedef ULONG_PTR DWORD_PTR,*PDWORD_PTR; __extension__ typedef long long LONG64,*PLONG64; __extension__ typedef unsigned long long ULONG64,*PULONG64; __extension__ typedef unsigned long long DWORD64,*PDWORD64; __extension__ typedef ULONG_PTR KAFFINITY; __extension__ typedef KAFFINITY *PKAFFINITY; # 135 "/usr/include/w32api/winnt.h" 2 3 4 # 236 "/usr/include/w32api/winnt.h" 3 4 typedef void *PVOID; typedef void *PVOID64; # 260 "/usr/include/w32api/winnt.h" 3 4 typedef char CHAR; typedef short SHORT; typedef int LONG; typedef int INT; typedef wchar_t WCHAR; typedef WCHAR *PWCHAR,*LPWCH,*PWCH; typedef const WCHAR *LPCWCH,*PCWCH; typedef WCHAR *NWPSTR,*LPWSTR,*PWSTR; typedef PWSTR *PZPWSTR; typedef const PWSTR *PCZPWSTR; typedef WCHAR *LPUWSTR,*PUWSTR; typedef const WCHAR *LPCWSTR,*PCWSTR; typedef PCWSTR *PZPCWSTR; typedef const WCHAR *LPCUWSTR,*PCUWSTR; typedef WCHAR *PZZWSTR; typedef const WCHAR *PCZZWSTR; typedef WCHAR *PUZZWSTR; typedef const WCHAR *PCUZZWSTR; typedef WCHAR *PNZWCH; typedef const WCHAR *PCNZWCH; typedef WCHAR *PUNZWCH; typedef const WCHAR *PCUNZWCH; # 309 "/usr/include/w32api/winnt.h" 3 4 typedef CHAR *PCHAR,*LPCH,*PCH; typedef const CHAR *LPCCH,*PCCH; typedef CHAR *NPSTR,*LPSTR,*PSTR; typedef PSTR *PZPSTR; typedef const PSTR *PCZPSTR; typedef const CHAR *LPCSTR,*PCSTR; typedef PCSTR *PZPCSTR; typedef CHAR *PZZSTR; typedef const CHAR *PCZZSTR; typedef CHAR *PNZCH; typedef const CHAR *PCNZCH; # 348 "/usr/include/w32api/winnt.h" 3 4 typedef char TCHAR, *PTCHAR; typedef unsigned char TBYTE, *PTBYTE; typedef LPSTR LPTCH,PTCH; typedef LPCCH LPCTCH,PCTCH; typedef LPSTR PTSTR,LPTSTR,PUTSTR,LPUTSTR; typedef LPCSTR PCTSTR,LPCTSTR,PCUTSTR,LPCUTSTR; typedef PZZSTR PZZTSTR, PUZZTSTR; typedef PCZZSTR PCZZTSTR, PCUZZTSTR; typedef PZPSTR PZPTSTR; typedef PNZCH PNZTCH, PUNZTCH; typedef PCNZCH PCNZTCH, PCUNZTCH; typedef SHORT *PSHORT; typedef LONG *PLONG; typedef struct _GROUP_AFFINITY { KAFFINITY Mask; WORD Group; WORD Reserved[3]; } GROUP_AFFINITY, *PGROUP_AFFINITY; typedef void *HANDLE; typedef HANDLE *PHANDLE; typedef BYTE FCHAR; typedef WORD FSHORT; typedef DWORD FLONG; typedef LONG HRESULT; # 420 "/usr/include/w32api/winnt.h" 3 4 typedef char CCHAR; typedef DWORD LCID; typedef PDWORD PLCID; typedef WORD LANGID; typedef enum { UNSPECIFIED_COMPARTMENT_ID = 0, DEFAULT_COMPARTMENT_ID } COMPARTMENT_ID,*PCOMPARTMENT_ID; # 449 "/usr/include/w32api/winnt.h" 3 4 typedef struct _FLOAT128 { __extension__ long long LowPart; __extension__ long long HighPart; } FLOAT128; typedef FLOAT128 *PFLOAT128; __extension__ typedef long long LONGLONG; __extension__ typedef unsigned long long ULONGLONG; typedef LONGLONG *PLONGLONG; typedef ULONGLONG *PULONGLONG; typedef LONGLONG USN; typedef union _LARGE_INTEGER { __extension__ struct { DWORD LowPart; LONG HighPart; } ; struct { DWORD LowPart; LONG HighPart; } u; LONGLONG QuadPart; } LARGE_INTEGER; typedef LARGE_INTEGER *PLARGE_INTEGER; typedef union _ULARGE_INTEGER { __extension__ struct { DWORD LowPart; DWORD HighPart; } ; struct { DWORD LowPart; DWORD HighPart; } u; ULONGLONG QuadPart; } ULARGE_INTEGER; typedef ULARGE_INTEGER *PULARGE_INTEGER; typedef struct _LUID { DWORD LowPart; LONG HighPart; } LUID,*PLUID; typedef ULONGLONG DWORDLONG; typedef DWORDLONG *PDWORDLONG; # 533 "/usr/include/w32api/winnt.h" 3 4 unsigned char __attribute__((__cdecl__)) _rotl8(unsigned char Value,unsigned char Shift); unsigned short __attribute__((__cdecl__)) _rotl16(unsigned short Value,unsigned char Shift); unsigned char __attribute__((__cdecl__)) _rotr8(unsigned char Value,unsigned char Shift); unsigned short __attribute__((__cdecl__)) _rotr16(unsigned short Value,unsigned char Shift); unsigned int __attribute__((__cdecl__)) _rotl(unsigned int Value,int Shift); unsigned int __attribute__((__cdecl__)) _rotr(unsigned int Value,int Shift); __extension__ unsigned long long __attribute__((__cdecl__)) _rotl64(unsigned long long Value,int Shift); __extension__ unsigned long long __attribute__((__cdecl__)) _rotr64(unsigned long long Value,int Shift); # 572 "/usr/include/w32api/winnt.h" 3 4 typedef BYTE BOOLEAN; typedef BOOLEAN *PBOOLEAN; typedef struct _LIST_ENTRY { struct _LIST_ENTRY *Flink; struct _LIST_ENTRY *Blink; } LIST_ENTRY,*PLIST_ENTRY,* PRLIST_ENTRY; typedef struct _SINGLE_LIST_ENTRY { struct _SINGLE_LIST_ENTRY *Next; } SINGLE_LIST_ENTRY,*PSINGLE_LIST_ENTRY; typedef struct LIST_ENTRY32 { DWORD Flink; DWORD Blink; } LIST_ENTRY32; typedef LIST_ENTRY32 *PLIST_ENTRY32; typedef struct LIST_ENTRY64 { ULONGLONG Flink; ULONGLONG Blink; } LIST_ENTRY64; typedef LIST_ENTRY64 *PLIST_ENTRY64; # 1 "/usr/include/w32api/guiddef.h" 1 3 4 # 9 "/usr/include/w32api/guiddef.h" 3 4 # 1 "/usr/include/w32api/_mingw.h" 1 3 4 # 10 "/usr/include/w32api/guiddef.h" 2 3 4 # 19 "/usr/include/w32api/guiddef.h" 3 4 typedef struct _GUID { unsigned int Data1; unsigned short Data2; unsigned short Data3; unsigned char Data4[8]; } GUID; # 71 "/usr/include/w32api/guiddef.h" 3 4 typedef GUID *LPGUID; typedef const GUID *LPCGUID; typedef GUID IID; typedef IID *LPIID; typedef GUID CLSID; typedef CLSID *LPCLSID; typedef GUID FMTID; typedef FMTID *LPFMTID; # 148 "/usr/include/w32api/guiddef.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 11 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 13 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 13 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 18 "/usr/include/string.h" 2 3 4 void * __attribute__((__cdecl__)) memchr (const void *, int, size_t); int __attribute__((__cdecl__)) memcmp (const void *, const void *, size_t); void * __attribute__((__cdecl__)) memcpy (void * , const void * , size_t); void * __attribute__((__cdecl__)) memmove (void *, const void *, size_t); void * __attribute__((__cdecl__)) memset (void *, int, size_t); char *__attribute__((__cdecl__)) strcat (char *, const char *); char *__attribute__((__cdecl__)) strchr (const char *, int); int __attribute__((__cdecl__)) strcmp (const char *, const char *); int __attribute__((__cdecl__)) strcoll (const char *, const char *); char *__attribute__((__cdecl__)) strcpy (char *, const char *); size_t __attribute__((__cdecl__)) strcspn (const char *, const char *); char *__attribute__((__cdecl__)) strerror (int); size_t __attribute__((__cdecl__)) strlen (const char *); char *__attribute__((__cdecl__)) strncat (char *, const char *, size_t); int __attribute__((__cdecl__)) strncmp (const char *, const char *, size_t); char *__attribute__((__cdecl__)) strncpy (char *, const char *, size_t); char *__attribute__((__cdecl__)) strpbrk (const char *, const char *); char *__attribute__((__cdecl__)) strrchr (const char *, int); size_t __attribute__((__cdecl__)) strspn (const char *, const char *); char *__attribute__((__cdecl__)) strstr (const char *, const char *); char *__attribute__((__cdecl__)) strtok (char *, const char *); size_t __attribute__((__cdecl__)) strxfrm (char *, const char *, size_t); char *__attribute__((__cdecl__)) strtok_r (char *, const char *, char **); int __attribute__((__cdecl__)) bcmp (const void *, const void *, size_t); void __attribute__((__cdecl__)) bcopy (const void *, void *, size_t); void __attribute__((__cdecl__)) bzero (void *, size_t); int __attribute__((__cdecl__)) ffs (int); char *__attribute__((__cdecl__)) index (const char *, int); void * __attribute__((__cdecl__)) memccpy (void * , const void * , int, size_t); void * __attribute__((__cdecl__)) mempcpy (void *, const void *, size_t); void * __attribute__((__cdecl__)) memmem (const void *, size_t, const void *, size_t); void * __attribute__((__cdecl__)) memrchr (const void *, int, size_t); void * __attribute__((__cdecl__)) rawmemchr (const void *, int); char *__attribute__((__cdecl__)) rindex (const char *, int); char *__attribute__((__cdecl__)) stpcpy (char *, const char *); char *__attribute__((__cdecl__)) stpncpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strcasecmp (const char *, const char *); char *__attribute__((__cdecl__)) strcasestr (const char *, const char *); char *__attribute__((__cdecl__)) strchrnul (const char *, int); char *__attribute__((__cdecl__)) strdup (const char *); char *__attribute__((__cdecl__)) _strdup_r (struct _reent *, const char *); char *__attribute__((__cdecl__)) strndup (const char *, size_t); char *__attribute__((__cdecl__)) _strndup_r (struct _reent *, const char *, size_t); # 87 "/usr/include/string.h" 3 4 int __attribute__((__cdecl__)) strerror_r (int, char *, size_t) __asm__ ("" "__xpg_strerror_r"); size_t __attribute__((__cdecl__)) strlcat (char *, const char *, size_t); size_t __attribute__((__cdecl__)) strlcpy (char *, const char *, size_t); int __attribute__((__cdecl__)) strncasecmp (const char *, const char *, size_t); size_t __attribute__((__cdecl__)) strnlen (const char *, size_t); char *__attribute__((__cdecl__)) strsep (char **, const char *); char *__attribute__((__cdecl__)) strlwr (char *); char *__attribute__((__cdecl__)) strupr (char *); char *__attribute__((__cdecl__)) strsignal (int __signo); int __attribute__((__cdecl__)) strtosigno (const char *__name); char * __attribute__((__cdecl__)) _strerror_r (struct _reent *, int, int, int *); Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 14 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 10 "/usr/include/sys/time.h" 2 3 4 struct timeval { time_t tv_sec; suseconds_t tv_usec; }; # 55 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 1 "/usr/include/cygwin/sys_time.h" 1 3 4 # 13 "/usr/include/cygwin/sys_time.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 17 "/usr/include/sys/select.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 18 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 24 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 10 "/usr/include/time.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 11 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 12 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/machine/time.h" 1 3 4 # 19 "/usr/include/time.h" 2 3 4 # 29 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; const char *tm_zone; }; clock_t __attribute__((__cdecl__)) clock (void); double __attribute__((__cdecl__)) difftime (time_t _time2, time_t _time1); time_t __attribute__((__cdecl__)) mktime (struct tm *_timeptr); time_t __attribute__((__cdecl__)) time (time_t *_timer); char *__attribute__((__cdecl__)) asctime (const struct tm *_tblock); char *__attribute__((__cdecl__)) ctime (const time_t *_time); struct tm *__attribute__((__cdecl__)) gmtime (const time_t *_timer); struct tm *__attribute__((__cdecl__)) localtime (const time_t *_timer); size_t __attribute__((__cdecl__)) strftime (char * _s, size_t _maxsize, const char * _fmt, const struct tm * _t) ; char *__attribute__((__cdecl__)) asctime_r (const struct tm *, char *) ; char *__attribute__((__cdecl__)) ctime_r (const time_t *, char *); struct tm *__attribute__((__cdecl__)) gmtime_r (const time_t *, struct tm *) ; struct tm *__attribute__((__cdecl__)) localtime_r (const time_t *, struct tm *) ; char *__attribute__((__cdecl__)) strptime (const char *, const char *, struct tm *) ; void __attribute__((__cdecl__)) tzset (void); void __attribute__((__cdecl__)) _tzset_r (struct _reent *); typedef struct __tzrule_struct { char ch; int m; int n; int d; int s; time_t change; long offset; } __tzrule_type; typedef struct __tzinfo_struct { int __tznorth; int __tzyear; __tzrule_type __tzrule[2]; } __tzinfo_type; __tzinfo_type *__attribute__((__cdecl__)) __gettzinfo (void); # 129 "/usr/include/time.h" 3 4 extern __attribute__((dllimport)) long _timezone; extern __attribute__((dllimport)) int _daylight; extern __attribute__((dllimport)) char *_tzname[2]; # 146 "/usr/include/time.h" 3 4 # 1 "/usr/include/cygwin/time.h" 1 3 4 # 19 "/usr/include/cygwin/time.h" 3 4 int __attribute__((__cdecl__)) clock_setres (clockid_t, struct timespec *); time_t __attribute__((__cdecl__)) timelocal (struct tm *); time_t __attribute__((__cdecl__)) timegm (struct tm *); extern int daylight __asm__ ( "_daylight"); extern long timezone __asm__ ( "_timezone"); # 147 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 108 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/cygwin/signal.h" 1 3 4 # 23 "/usr/include/cygwin/signal.h" 3 4 struct _uc_fpxreg { __uint16_t significand[4]; __uint16_t exponent; __uint16_t padding[3]; }; struct _uc_xmmreg { __uint32_t element[4]; }; struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _uc_fpxreg st[8]; struct _uc_xmmreg xmm[16]; __uint32_t padding[24]; }; struct ucontext { __uint64_t p1home; __uint64_t p2home; __uint64_t p3home; __uint64_t p4home; __uint64_t p5home; __uint64_t p6home; __uint32_t cr2; __uint32_t mxcsr; __uint16_t cs; __uint16_t ds; __uint16_t es; __uint16_t fs; __uint16_t gs; __uint16_t ss; __uint32_t eflags; __uint64_t dr0; __uint64_t dr1; __uint64_t dr2; __uint64_t dr3; __uint64_t dr6; __uint64_t dr7; __uint64_t rax; __uint64_t rcx; __uint64_t rdx; __uint64_t rbx; __uint64_t rsp; __uint64_t rbp; __uint64_t rsi; __uint64_t rdi; __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rip; struct _fpstate fpregs; __uint64_t vcx; __uint64_t dbc; __uint64_t btr; __uint64_t bfr; __uint64_t etr; __uint64_t efr; __uint8_t _internal; __uint64_t oldmask; }; # 154 "/usr/include/cygwin/signal.h" 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; void (*sigev_notify_function) (sigval_t); pthread_attr_t *sigev_notify_attributes; } sigevent_t; #pragma pack(push,4) struct _sigcommune { __uint32_t _si_code; void *_si_read_handle; void *_si_write_handle; void *_si_process_handle; __extension__ union { int _si_fd; void *_si_pipe_fhandler; char *_si_str; }; }; # 197 "/usr/include/cygwin/signal.h" 3 4 typedef struct { int si_signo; int si_code; pid_t si_pid; uid_t si_uid; int si_errno; __extension__ union { __uint32_t __pad[32]; struct _sigcommune _si_commune; __extension__ struct { __extension__ union { sigval_t si_sigval; sigval_t si_value; }; __extension__ struct { timer_t si_tid; unsigned int si_overrun; }; }; __extension__ struct { int si_status; clock_t si_utime; clock_t si_stime; }; void *si_addr; # 241 "/usr/include/cygwin/signal.h" 3 4 }; } siginfo_t; #pragma pack(pop) enum { SI_USER = 0, SI_ASYNCIO = 2, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_KERNEL, ILL_ILLOPC, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK, FPE_INTDIV, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB, SEGV_MAPERR, SEGV_ACCERR, BUS_ADRALN, BUS_ADRERR, BUS_OBJERR, CLD_EXITED, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD }; typedef __uint64_t sigset_t; typedef void (*_sig_func_ptr)(int); struct sigaction { __extension__ union { _sig_func_ptr sa_handler; void (*sa_sigaction) ( int, siginfo_t *, void * ); }; sigset_t sa_mask; int sa_flags; }; # 386 "/usr/include/cygwin/signal.h" 3 4 void psiginfo (const siginfo_t *, const char *); int sigwait (const sigset_t *, int *); int sigwaitinfo (const sigset_t *, siginfo_t *); int sighold (int); int sigignore (int); int sigrelse (int); _sig_func_ptr sigset (int, _sig_func_ptr); int sigqueue(pid_t, int, const union sigval); int siginterrupt (int, int); extern const char __attribute__((dllimport)) *sys_sigabbrev[]; extern const char __attribute__((dllimport)) *sys_siglist[]; # 109 "/usr/include/sys/signal.h" 2 3 4 # 135 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) sigprocmask (int how, const sigset_t *set, sigset_t *oset); int __attribute__((__cdecl__)) pthread_sigmask (int how, const sigset_t *set, sigset_t *oset); # 152 "/usr/include/sys/signal.h" 3 4 int __attribute__((__cdecl__)) kill (pid_t, int); int __attribute__((__cdecl__)) killpg (pid_t, int); int __attribute__((__cdecl__)) sigaction (int, const struct sigaction *, struct sigaction *); int __attribute__((__cdecl__)) sigaddset (sigset_t *, const int); int __attribute__((__cdecl__)) sigdelset (sigset_t *, const int); int __attribute__((__cdecl__)) sigismember (const sigset_t *, int); int __attribute__((__cdecl__)) sigfillset (sigset_t *); int __attribute__((__cdecl__)) sigemptyset (sigset_t *); int __attribute__((__cdecl__)) sigpending (sigset_t *); int __attribute__((__cdecl__)) sigsuspend (const sigset_t *); int __attribute__((__cdecl__)) sigpause (int); int __attribute__((__cdecl__)) pthread_kill (pthread_t thread, int sig); int __attribute__((__cdecl__)) sigwaitinfo (const sigset_t *set, siginfo_t *info); int __attribute__((__cdecl__)) sigtimedwait (const sigset_t *set, siginfo_t *info, const struct timespec *timeout) ; int __attribute__((__cdecl__)) sigwait (const sigset_t *set, int *sig); int __attribute__((__cdecl__)) sigqueue (pid_t pid, int signo, const union sigval value); # 6 "/usr/include/signal.h" 2 3 4 typedef int sig_atomic_t; typedef _sig_func_ptr sig_t; typedef _sig_func_ptr sighandler_t; struct _reent; _sig_func_ptr __attribute__((__cdecl__)) _signal_r (struct _reent *, int, _sig_func_ptr); int __attribute__((__cdecl__)) _raise_r (struct _reent *, int); _sig_func_ptr __attribute__((__cdecl__)) signal (int, _sig_func_ptr); int __attribute__((__cdecl__)) raise (int); void __attribute__((__cdecl__)) psignal (int, const char *); # 152 "/usr/include/time.h" 2 3 4 int __attribute__((__cdecl__)) clock_settime (clockid_t clock_id, const struct timespec *tp); int __attribute__((__cdecl__)) clock_gettime (clockid_t clock_id, struct timespec *tp); int __attribute__((__cdecl__)) clock_getres (clockid_t clock_id, struct timespec *res); int __attribute__((__cdecl__)) timer_create (clockid_t clock_id, struct sigevent * evp, timer_t * timerid) ; int __attribute__((__cdecl__)) timer_delete (timer_t timerid); int __attribute__((__cdecl__)) timer_settime (timer_t timerid, int flags, const struct itimerspec * value, struct itimerspec * ovalue) ; int __attribute__((__cdecl__)) timer_gettime (timer_t timerid, struct itimerspec *value); int __attribute__((__cdecl__)) timer_getoverrun (timer_t timerid); int __attribute__((__cdecl__)) nanosleep (const struct timespec *rqtp, struct timespec *rmtp); # 198 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_nanosleep (clockid_t clock_id, int flags, const struct timespec *rqtp, struct timespec *rmtp) ; # 273 "/usr/include/time.h" 3 4 int __attribute__((__cdecl__)) clock_getcpuclockid (pid_t pid, clockid_t *clock_id); int __attribute__((__cdecl__)) clock_setenable_attr (clockid_t clock_id, int attr); int __attribute__((__cdecl__)) clock_getenable_attr (clockid_t clock_id, int *attr); # 25 "/usr/include/sys/select.h" 2 3 4 int select (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, struct timeval *__timeout) ; int pselect (int __n, _types_fd_set *__readfds, _types_fd_set *__writefds, _types_fd_set *__exceptfds, const struct timespec *__timeout, const sigset_t *__set) ; # 14 "/usr/include/cygwin/sys_time.h" 2 3 4 int futimes (int, const struct timeval *); int lutimes (const char *, const struct timeval *); # 62 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; int __attribute__((__cdecl__)) gettimeofday (struct timeval * __p, void * __tz) ; int __attribute__((__cdecl__)) settimeofday (const struct timeval *, const struct timezone *); int __attribute__((__cdecl__)) adjtime (const struct timeval *, struct timeval *); int __attribute__((__cdecl__)) utimes (const char *__path, const struct timeval *__tvp); int __attribute__((__cdecl__)) getitimer (int __which, struct itimerval *__value); int __attribute__((__cdecl__)) setitimer (int __which, const struct itimerval * __value, struct itimerval * __ovalue) ; # 15 "/usr/include/sys/resource.h" 2 3 4 # 41 "/usr/include/sys/resource.h" 3 4 typedef unsigned long rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; struct rusage { struct timeval ru_utime; struct timeval ru_stime; long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; int getrlimit (int __resource, struct rlimit *__rlp); int setrlimit (int __resource, const struct rlimit *__rlp); int getrusage (int __who, struct rusage *__rusage); int getpriority (int which, id_t who); int setpriority (int which, id_t who, int value); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 9 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 12 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 25 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 13 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 15 "/usr/include/sys/unistd.h" 2 3 4 extern char **environ; void __attribute__((__cdecl__)) _exit (int __status ) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) access (const char *__path, int __amode ); unsigned __attribute__((__cdecl__)) alarm (unsigned __secs ); int __attribute__((__cdecl__)) chdir (const char *__path ); int __attribute__((__cdecl__)) chmod (const char *__path, mode_t __mode ); int __attribute__((__cdecl__)) chown (const char *__path, uid_t __owner, gid_t __group ); int __attribute__((__cdecl__)) chroot (const char *__path ); int __attribute__((__cdecl__)) close (int __fildes ); size_t __attribute__((__cdecl__)) confstr (int __name, char *__buf, size_t __len); char * __attribute__((__cdecl__)) ctermid (char *__s ); char * __attribute__((__cdecl__)) cuserid (char *__s ); int __attribute__((__cdecl__)) daemon (int nochdir, int noclose); int __attribute__((__cdecl__)) dup (int __fildes ); int __attribute__((__cdecl__)) dup2 (int __fildes, int __fildes2 ); int __attribute__((__cdecl__)) dup3 (int __fildes, int __fildes2, int flags); int __attribute__((__cdecl__)) eaccess (const char *__path, int __mode); void __attribute__((__cdecl__)) endusershell (void); int __attribute__((__cdecl__)) euidaccess (const char *__path, int __mode); int __attribute__((__cdecl__)) execl (const char *__path, const char *, ... ); int __attribute__((__cdecl__)) execle (const char *__path, const char *, ... ); int __attribute__((__cdecl__)) execlp (const char *__file, const char *, ... ); int __attribute__((__cdecl__)) execlpe (const char *__file, const char *, ... ); int __attribute__((__cdecl__)) execv (const char *__path, char * const __argv[] ); int __attribute__((__cdecl__)) execve (const char *__path, char * const __argv[], char * const __envp[] ); int __attribute__((__cdecl__)) execvp (const char *__file, char * const __argv[] ); int __attribute__((__cdecl__)) execvpe (const char *__file, char * const __argv[], char * const __envp[] ); int __attribute__((__cdecl__)) faccessat (int __dirfd, const char *__path, int __mode, int __flags); int __attribute__((__cdecl__)) fchdir (int __fildes); int __attribute__((__cdecl__)) fchmod (int __fildes, mode_t __mode ); int __attribute__((__cdecl__)) fchown (int __fildes, uid_t __owner, gid_t __group ); int __attribute__((__cdecl__)) fchownat (int __dirfd, const char *__path, uid_t __owner, gid_t __group, int __flags); int __attribute__((__cdecl__)) fexecve (int __fd, char * const __argv[], char * const __envp[] ); pid_t __attribute__((__cdecl__)) fork (void ); long __attribute__((__cdecl__)) fpathconf (int __fd, int __name ); int __attribute__((__cdecl__)) fsync (int __fd); int __attribute__((__cdecl__)) fdatasync (int __fd); char * __attribute__((__cdecl__)) get_current_dir_name (void); char * __attribute__((__cdecl__)) getcwd (char *__buf, size_t __size ); int __attribute__((__cdecl__)) getdomainname (char *__name, size_t __len); gid_t __attribute__((__cdecl__)) getegid (void ); uid_t __attribute__((__cdecl__)) geteuid (void ); gid_t __attribute__((__cdecl__)) getgid (void ); int __attribute__((__cdecl__)) getgroups (int __gidsetsize, gid_t __grouplist[] ); long __attribute__((__cdecl__)) gethostid (void); char * __attribute__((__cdecl__)) getlogin (void ); int __attribute__((__cdecl__)) getlogin_r (char *name, size_t namesize); char * __attribute__((__cdecl__)) getpass (const char *__prompt); int __attribute__((__cdecl__)) getpagesize (void); int __attribute__((__cdecl__)) getpeereid (int, uid_t *, gid_t *); pid_t __attribute__((__cdecl__)) getpgid (pid_t); pid_t __attribute__((__cdecl__)) getpgrp (void ); pid_t __attribute__((__cdecl__)) getpid (void ); pid_t __attribute__((__cdecl__)) getppid (void ); pid_t __attribute__((__cdecl__)) getsid (pid_t); uid_t __attribute__((__cdecl__)) getuid (void ); char * __attribute__((__cdecl__)) getusershell (void); char * __attribute__((__cdecl__)) getwd (char *__buf ); int __attribute__((__cdecl__)) iruserok (unsigned long raddr, int superuser, const char *ruser, const char *luser); int __attribute__((__cdecl__)) isatty (int __fildes ); int __attribute__((__cdecl__)) lchown (const char *__path, uid_t __owner, gid_t __group ); int __attribute__((__cdecl__)) link (const char *__path1, const char *__path2 ); int __attribute__((__cdecl__)) linkat (int __dirfd1, const char *__path1, int __dirfd2, const char *__path2, int __flags ); int __attribute__((__cdecl__)) nice (int __nice_value ); off_t __attribute__((__cdecl__)) lseek (int __fildes, off_t __offset, int __whence ); int __attribute__((__cdecl__)) lockf (int __fd, int __cmd, off_t __len); long __attribute__((__cdecl__)) pathconf (const char *__path, int __name ); int __attribute__((__cdecl__)) pause (void ); int __attribute__((__cdecl__)) pthread_atfork (void (*)(void), void (*)(void), void (*)(void)); int __attribute__((__cdecl__)) pipe (int __fildes[2] ); int __attribute__((__cdecl__)) pipe2 (int __fildes[2], int flags); ssize_t __attribute__((__cdecl__)) pread (int __fd, void *__buf, size_t __nbytes, off_t __offset); ssize_t __attribute__((__cdecl__)) pwrite (int __fd, const void *__buf, size_t __nbytes, off_t __offset); _ssize_t __attribute__((__cdecl__)) read (int __fd, void *__buf, size_t __nbyte ); int __attribute__((__cdecl__)) rresvport (int *__alport); int __attribute__((__cdecl__)) revoke (char *__path); int __attribute__((__cdecl__)) rmdir (const char *__path ); int __attribute__((__cdecl__)) ruserok (const char *rhost, int superuser, const char *ruser, const char *luser); void * __attribute__((__cdecl__)) sbrk (ptrdiff_t __incr); int __attribute__((__cdecl__)) setegid (gid_t __gid ); int __attribute__((__cdecl__)) seteuid (uid_t __uid ); int __attribute__((__cdecl__)) setgid (gid_t __gid ); int __attribute__((__cdecl__)) setgroups (int ngroups, const gid_t *grouplist ); int __attribute__((__cdecl__)) setpgid (pid_t __pid, pid_t __pgid ); int __attribute__((__cdecl__)) setpgrp (void ); int __attribute__((__cdecl__)) setregid (gid_t __rgid, gid_t __egid); int __attribute__((__cdecl__)) setreuid (uid_t __ruid, uid_t __euid); pid_t __attribute__((__cdecl__)) setsid (void ); int __attribute__((__cdecl__)) setuid (uid_t __uid ); void __attribute__((__cdecl__)) setusershell (void); unsigned __attribute__((__cdecl__)) sleep (unsigned int __seconds ); void __attribute__((__cdecl__)) swab (const void *, void *, ssize_t); long __attribute__((__cdecl__)) sysconf (int __name ); pid_t __attribute__((__cdecl__)) tcgetpgrp (int __fildes ); int __attribute__((__cdecl__)) tcsetpgrp (int __fildes, pid_t __pgrp_id ); char * __attribute__((__cdecl__)) ttyname (int __fildes ); int __attribute__((__cdecl__)) ttyname_r (int, char *, size_t); int __attribute__((__cdecl__)) unlink (const char *__path ); int __attribute__((__cdecl__)) usleep (useconds_t __useconds); int __attribute__((__cdecl__)) vhangup (void ); _ssize_t __attribute__((__cdecl__)) write (int __fd, const void *__buf, size_t __nbyte ); # 1 "/usr/include/getopt.h" 1 3 4 # 45 "/usr/include/getopt.h" 3 4 extern int __attribute__((dllimport)) opterr; extern int __attribute__((dllimport)) optind; extern int __attribute__((dllimport)) optopt; extern int __attribute__((dllimport)) optreset; extern char __attribute__((dllimport)) *optarg; int getopt (int, char * const *, const char *); # 199 "/usr/include/sys/unistd.h" 2 3 4 # 208 "/usr/include/sys/unistd.h" 3 4 pid_t __attribute__((__cdecl__)) vfork (void ); # 232 "/usr/include/sys/unistd.h" 3 4 int __attribute__((__cdecl__)) ftruncate (int __fd, off_t __length); int __attribute__((__cdecl__)) truncate (const char *, off_t __length); int __attribute__((__cdecl__)) getdtablesize (void); int __attribute__((__cdecl__)) setdtablesize (int); useconds_t __attribute__((__cdecl__)) ualarm (useconds_t __useconds, useconds_t __interval); int __attribute__((__cdecl__)) gethostname (char *__name, size_t __len); char * __attribute__((__cdecl__)) mktemp (char *); void __attribute__((__cdecl__)) sync (void); ssize_t __attribute__((__cdecl__)) readlink (const char * __path, char * __buf, size_t __buflen) ; ssize_t __attribute__((__cdecl__)) readlinkat (int __dirfd1, const char * __path, char * __buf, size_t __buflen) ; int __attribute__((__cdecl__)) symlink (const char *__name1, const char *__name2); int __attribute__((__cdecl__)) symlinkat (const char *, int, const char *); int __attribute__((__cdecl__)) unlinkat (int, const char *, int); # 5 "/usr/include/unistd.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 14 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/cygwin/in.h" 1 3 4 # 21 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 19 "/usr/include/cygwin/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 20 "/usr/include/cygwin/socket.h" 2 3 4 typedef int socklen_t; typedef uint16_t sa_family_t; struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 43 "/usr/include/cygwin/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char _ss_pad1[((sizeof (int64_t)) - sizeof (sa_family_t))]; int64_t __ss_align; char _ss_pad2[(128 - (sizeof (sa_family_t) + ((sizeof (int64_t)) - sizeof (sa_family_t)) + (sizeof (int64_t))))]; }; # 1 "/usr/include/asm/socket.h" 1 3 4 # 14 "/usr/include/asm/socket.h" 3 4 # 1 "/usr/include/cygwin/if.h" 1 3 4 # 18 "/usr/include/cygwin/if.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 21 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 19 "/usr/include/cygwin/if.h" 2 3 4 # 1 "/usr/include/cygwin/socket.h" 1 3 4 # 20 "/usr/include/cygwin/if.h" 2 3 4 # 34 "/usr/include/cygwin/if.h" 3 4 struct if_nameindex { unsigned if_index; char *if_name; }; struct ifreq_frndlyname { int ifrf_len; char ifrf_friendlyname[260]; }; # 59 "/usr/include/cygwin/if.h" 3 4 struct ifreq { union { char ifrn_name[44]; } ifr_ifrn; union { struct sockaddr ifru_addr; struct sockaddr ifru_broadaddr; struct sockaddr ifru_dstaddr; struct sockaddr ifru_netmask; struct sockaddr ifru_hwaddr; int ifru_flags; int ifru_metric; int ifru_mtu; int ifru_ifindex; void *ifru_data; char __ifru_pad[28]; } ifr_ifru; }; # 101 "/usr/include/cygwin/if.h" 3 4 struct ifconf { int ifc_len; union { caddr_t ifcu_buf; struct ifreq *ifcu_req; } ifc_ifcu; }; extern unsigned if_nametoindex (const char *); extern char *if_indextoname (unsigned, char *); extern struct if_nameindex *if_nameindex (void); extern void if_freenameindex (struct if_nameindex *); # 15 "/usr/include/asm/socket.h" 2 3 4 # 52 "/usr/include/cygwin/socket.h" 2 3 4 # 1 "/usr/include/cygwin/sockios.h" 1 3 4 # 53 "/usr/include/cygwin/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 15 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 16 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 54 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 20 "/usr/include/sys/uio.h" 2 3 4 struct iovec { void *iov_base; size_t iov_len; }; extern ssize_t readv (int filedes, const struct iovec *vector, int count); extern ssize_t writev (int filedes, const struct iovec *vector, int count); # 54 "/usr/include/cygwin/socket.h" 2 3 4 struct ucred { pid_t pid; uid_t uid; gid_t gid; }; struct linger { unsigned short l_onoff; unsigned short l_linger; }; struct msghdr { void * msg_name; socklen_t msg_namelen; struct iovec * msg_iov; int msg_iovlen; void * msg_control; socklen_t msg_controllen; int msg_flags; }; struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 22 "/usr/include/cygwin/in.h" 2 3 4 typedef uint16_t in_port_t; typedef uint32_t in_addr_t; enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_RAW = 255, IPPROTO_MAX }; # 76 "/usr/include/cygwin/in.h" 3 4 enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; struct in_addr { in_addr_t s_addr; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct in_pktinfo { struct in_addr ipi_addr; uint32_t ipi_ifindex; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char __pad[16 - sizeof(short int) - sizeof(unsigned short int) - sizeof(struct in_addr)]; }; # 256 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/asm/byteorder.h" 1 3 4 # 26 "/usr/include/asm/byteorder.h" 3 4 extern uint32_t ntohl(uint32_t); extern uint16_t ntohs(uint16_t); extern uint32_t htonl(uint32_t); extern uint16_t htons(uint16_t); extern __inline__ __attribute__ ((__always_inline__)) uint32_t __ntohl(uint32_t); extern __inline__ __attribute__ ((__always_inline__)) uint16_t __ntohs(uint16_t); extern __inline__ __attribute__ ((__always_inline__)) uint32_t __ntohl(uint32_t x) { __asm__("bswap %0" : "=r" (x) : "0" (x)); return x; } extern __inline__ __attribute__ ((__always_inline__)) uint16_t __ntohs(uint16_t x) { __asm__("xchgb %b0,%h0" : "=Q" (x) : "0" (x)); return x; } # 257 "/usr/include/cygwin/in.h" 2 3 4 # 267 "/usr/include/cygwin/in.h" 3 4 # 1 "/usr/include/cygwin/in6.h" 1 3 4 # 75 "/usr/include/cygwin/in6.h" 3 4 struct in6_addr { union { uint8_t __s6_addr[16]; uint16_t __s6_addr16[8]; uint32_t __s6_addr32[4]; } __u6; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; uint32_t ipv6mr_interface; }; struct ipv6_rt_hdr { uint8_t nexthdr; uint8_t hdrlen; uint8_t type; uint8_t segments_left; }; struct in6_pktinfo { struct in6_addr ipi6_addr; uint32_t ipi6_ifindex; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 268 "/usr/include/cygwin/in.h" 2 3 4 # 15 "/usr/include/netinet/in.h" 2 3 4 extern int bindresvport (int, struct sockaddr_in *); extern int bindresvport_sa (int, struct sockaddr *); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: gcc -c -o /tmp/petsc-DZOa4u/config.headers/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from PETSc.utilities.cacheDetails(/home/semih/petsc/config/PETSc/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from PETSc.utilities.cacheDetails(config/PETSc/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c: In function ‘getconf_LEVEL1_DCACHE_SIZE’: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c:4:56: error: ‘_SC_LEVEL1_DCACHE_SIZE’ undeclared (first use in this function) long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } ^ /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c:4:56: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe Executing: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe Executing: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe Executing: /tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails/conftest.exe Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST checkMemcmp from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:109) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:109) Check for 8-bit clean memcmp All intermediate test results are stored in /tmp/petsc-DZOa4u/config.functions Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.functions/conftest.exe Executing: /tmp/petsc-DZOa4u/config.functions/conftest.exe ================================================================================ TEST checkSysinfo from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:133) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:133) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:26: fatal error: linux/kernel.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 16 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 1 3 4 # 52 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 9 "/usr/include/machine/_default_types.h" 2 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 53 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 55 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include-fixed/sys/cdefs.h" 2 3 4 # 17 "/usr/include/sys/sysinfo.h" 2 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char __f[10]; }; extern int sysinfo (struct sysinfo *); extern int get_nprocs_conf (void); extern int get_nprocs (void); extern long get_phys_pages (void); extern long get_avphys_pages (void); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-DZOa4u/config.functions/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.functions/conftest.c:17:1: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:156) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:156) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vprintf’ [enabled by default] char vprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_VPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.functions/conftest.c:8:8: warning: ‘Argp’ is used uninitialized in this function [-Wuninitialized] vprintf( "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:163) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:163) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vfprintf’ [enabled by default] char vfprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_VFPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.functions/conftest.c:8:9: warning: ‘Argp’ is used uninitialized in this function [-Wuninitialized] vfprintf(stdout, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:170) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:170) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_vsnprintf' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_vsnprintf' collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vsnprintf’ [enabled by default] char vsnprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.functions/conftest.c:8:10: warning: ‘Argp’ is used uninitialized in this function [-Wuninitialized] vsnprintf(str,5, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl ================================================================================ TEST checkNanosleep from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:214) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:214) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:190) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:190) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:200) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:200) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:206) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:206) Checks whether the variable argument list functionality is working Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/semih/petsc/config/BuildSystem/config/functions.py:88) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:88) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time sysctlbyname stricmp] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] char snprintf(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] char bzero(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:36:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] char fork(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] char strcasecmp(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:82: undefined reference to `_sleep' /tmp/petsc-DZOa4u/config.functions/conftest.c:82:(.text+0x18): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_sleep' /tmp/petsc-DZOa4u/config.functions/conftest.c:112: undefined reference to `_getcwd' /tmp/petsc-DZOa4u/config.functions/conftest.c:112:(.text+0x31): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_getcwd' /tmp/petsc-DZOa4u/config.functions/conftest.c:130: undefined reference to `_lseek' /tmp/petsc-DZOa4u/config.functions/conftest.c:130:(.text+0x40): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_lseek' /tmp/petsc-DZOa4u/config.functions/conftest.c:142: undefined reference to `_access' /tmp/petsc-DZOa4u/config.functions/conftest.c:142:(.text+0x4a): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_access' /tmp/petsc-DZOa4u/config.functions/conftest.c:190: undefined reference to `_snprintf' /tmp/petsc-DZOa4u/config.functions/conftest.c:190:(.text+0x72): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_snprintf' /tmp/petsc-DZOa4u/config.functions/conftest.c:220: undefined reference to `sbreak' /tmp/petsc-DZOa4u/config.functions/conftest.c:220:(.text+0x8b): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `sbreak' /tmp/petsc-DZOa4u/config.functions/conftest.c:262: undefined reference to `_set_output_format' /tmp/petsc-DZOa4u/config.functions/conftest.c:262:(.text+0xae): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_set_output_format' /tmp/petsc-DZOa4u/config.functions/conftest.c:268: undefined reference to `PXFGETARG' /tmp/petsc-DZOa4u/config.functions/conftest.c:268:(.text+0xb3): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `PXFGETARG' /tmp/petsc-DZOa4u/config.functions/conftest.c:340: undefined reference to `sysctlbyname' /tmp/petsc-DZOa4u/config.functions/conftest.c:340:(.text+0xef): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `sysctlbyname' /tmp/petsc-DZOa4u/config.functions/conftest.c:346: undefined reference to `stricmp' /tmp/petsc-DZOa4u/config.functions/conftest.c:346:(.text+0xf4): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ‘bzero’ [enabled by default] char bzero(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:27:6: warning: conflicting types for built-in function ‘fork’ [enabled by default] char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘strcasecmp’ [enabled by default] char strcasecmp(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ‘memmove’ [enabled by default] char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_sleep' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ [enabled by default] char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_getcwd' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [_lseek] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_lseek' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_access' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_snprintf' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `sbreak' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_set_output_format' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `sysctlbyname' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `sysctlbyname' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `stricmp' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/semih/petsc/config/PETSc/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/semih/petsc/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST configureFeatureTestMacros from PETSc.utilities.featureTestMacros(/home/semih/petsc/config/PETSc/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from PETSc.utilities.featureTestMacros(config/PETSc/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c:7:1: error: unknown type name ‘cpu_set_t’ cpu_set_t mset; ^ /tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function ‘CPU_ZERO’ [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST check_siginfo_t from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-DZOa4u/config.types Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:11: warning: unused variable ‘a’ [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ __int64 a;; ^ /tmp/petsc-DZOa4u/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.types /tmp/petsc-DZOa4u/config.types/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.types/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.types/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.types/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.types/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.types/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 21 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 61 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 13 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 44 "/usr/include/sys/lock.h" 3 4 void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 19 "/usr/include/machine/types.h" 3 4 typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 93 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; typedef long time_t; struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; typedef char * caddr_t; # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 244 "/usr/include/sys/types.h" 3 4 typedef long fd_mask; typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; # 275 "/usr/include/sys/types.h" 3 4 typedef unsigned long clockid_t; typedef unsigned long timer_t; typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 20 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 14 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 15 "/usr/include/stdint.h" 2 3 4 typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 91 "/usr/include/stdint.h" 3 4 typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 15 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 16 "/usr/include/endian.h" 2 3 4 # 32 "/usr/include/endian.h" 3 4 # 1 "/usr/include/byteswap.h" 1 3 4 # 18 "/usr/include/byteswap.h" 3 4 static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 # 22 "/usr/include/cygwin/types.h" 2 3 4 typedef struct timespec timespec_t; typedef struct timespec timestruc_t; typedef _off_t off_t; typedef __loff_t loff_t; typedef __int16_t __dev16_t; typedef __uint32_t dev_t; typedef __int32_t blksize_t; typedef __int32_t __blkcnt32_t; typedef __int64_t blkcnt_t; typedef unsigned long fsblkcnt_t; typedef unsigned long fsfilcnt_t; typedef unsigned short __uid16_t; typedef __uint32_t uid_t; typedef unsigned short __gid16_t; typedef __uint32_t gid_t; typedef __uint64_t ino_t; typedef __uint32_t id_t; # 112 "/usr/include/cygwin/types.h" 3 4 struct flock { short l_type; short l_whence; off_t l_start; off_t l_len; pid_t l_pid; }; typedef long long key_t; typedef unsigned long vm_offset_t; typedef unsigned long vm_size_t; typedef void *vm_object_t; typedef unsigned char u_int8_t; typedef __uint16_t u_int16_t; typedef __uint32_t u_int32_t; typedef __uint64_t u_int64_t; typedef __int32_t register_t; typedef char *addr_t; typedef unsigned mode_t; typedef struct __pthread_t {char __dummy;} *pthread_t; typedef struct __pthread_mutex_t {char __dummy;} *pthread_mutex_t; typedef struct __pthread_key_t {char __dummy;} *pthread_key_t; typedef struct __pthread_attr_t {char __dummy;} *pthread_attr_t; typedef struct __pthread_mutexattr_t {char __dummy;} *pthread_mutexattr_t; typedef struct __pthread_condattr_t {char __dummy;} *pthread_condattr_t; typedef struct __pthread_cond_t {char __dummy;} *pthread_cond_t; typedef struct { pthread_mutex_t mutex; int state; } pthread_once_t; typedef struct __pthread_spinlock_t {char __dummy;} *pthread_spinlock_t; typedef struct __pthread_rwlock_t {char __dummy;} *pthread_rwlock_t; typedef struct __pthread_rwlockattr_t {char __dummy;} *pthread_rwlockattr_t; # 219 "/usr/include/cygwin/types.h" 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 14 "/usr/include/sys/sysmacros.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 15 "/usr/include/sys/sysmacros.h" 2 3 4 extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t); extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int, int); extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_major(dev_t dev) { return (int)(((dev) >> 16) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) int gnu_dev_minor(dev_t dev) { return (int)((dev) & 0xffff); } extern __inline__ __attribute__ ((__always_inline__)) dev_t gnu_dev_makedev(int maj, int min) { return (((maj) << 16) | ((min) & 0xffff)); } # 220 "/usr/include/cygwin/types.h" 2 3 4 # 482 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-DZOa4u/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkConst from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:158) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:158) Checks for working const, and if not found defines it to empty string Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:30:9: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-DZOa4u/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:214) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:214) If the machine is big endian, defines WORDS_BIGENDIAN Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:11:3: error: unknown type name ‘not’ not big endian ^ /tmp/petsc-DZOa4u/config.types/conftest.c:11:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘endian’ not big endian ^ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:267) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:267) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:318) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:318) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: gcc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/home/semih/petsc/config/BuildSystem/config/types.py:364) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:364) ================================================================================ TEST configureMemAlign from PETSc.utilities.memAlign(/home/semih/petsc/config/PETSc/utilities/memAlign.py:30) TESTING: configureMemAlign from PETSc.utilities.memAlign(config/PETSc/utilities/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST configureCHUD from PETSc.utilities.CHUD(/home/semih/petsc/config/PETSc/utilities/CHUD.py:25) TESTING: configureCHUD from PETSc.utilities.CHUD(config/PETSc/utilities/CHUD.py:25) Determines if the Apple CHUD hardware monitoring utilities are available Executing: uname -s stdout: CYGWIN_NT-6.1 ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lsocket /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lsocket /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lnsl collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_sin’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_floor’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:8:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_log10’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:11:43: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_pow’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:14:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:41: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_erf() { double x = 0,y; y = erf(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:44: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double x = 0,y; y = tgamma(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o:conftest.c:(.rdata$.refptr._fe_dfl_env[.refptr._fe_dfl_env]+0x0): undefined reference to `_fe_dfl_env' collect2: error: ld returned 1 exit status Popping language C Warning: with FE_DFL_ENV not found ================================================================================ TEST checkCompression from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:293) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_compress': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `compress' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x49): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `compress' /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_uncompress': /tmp/petsc-DZOa4u/config.libraries/conftest.c:8: undefined reference to `uncompress' /tmp/petsc-DZOa4u/config.libraries/conftest.c:8:(.text+0x9f): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `uncompress' collect2: error: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lz -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['zlib.lib'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_compress’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:119: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /tmp/petsc-DZOa4u/config.libraries/conftest.c: In function ‘_check_uncompress’: /tmp/petsc-DZOa4u/config.libraries/conftest.c:8:121: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o zlib.lib -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: zlib.lib: No such file or directory Popping language C Warning: No compression library found ================================================================================ TEST checkRealtime from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:314) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:314) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:330) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:330) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -ldl -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: gcc -E -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 19 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); extern void dlfork (int); # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/semih/petsc/config/PETSc/utilities/missing.py:39) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:39) Checks for limits All intermediate test results are stored in /tmp/petsc-DZOa4u/PETSc.utilities.missing Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/semih/petsc/config/PETSc/utilities/missing.py:49) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:49) Checks if u_short is undefined Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/semih/petsc/config/PETSc/utilities/missing.py:55) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:55) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/semih/petsc/config/PETSc/utilities/missing.py:75) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:75) Check for missing signals, and define MISSING_ if necessary Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/semih/petsc/config/PETSc/utilities/missing.py:92) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:92) Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/home/semih/petsc/config/PETSc/utilities/missing.py:117) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:117) Executing: gcc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/PETSc.utilities.missing/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language Cxx ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/semih/petsc/config/PETSc/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for functions [get_command_argument] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument(); static void _check_get_command_argument() { get_command_argument(); } int main() { _check_get_command_argument();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_get_command_argument': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `get_command_argument' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `get_command_argument' collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg(); static void _check_getarg() { getarg(); } int main() { _check_getarg();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_getarg': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `getarg' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `getarg' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ipxfargc_] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `ipxfargc_' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `ipxfargc_' collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `f90_unix_MP_iargc' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `PXFGETARG' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `iargc_' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `iargc_' collect2: error: ld returned 1 exit status Checking for functions [GETARG@16] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.c:13:12: error: stray ‘@’ in program char GETARG@16(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:13:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant char GETARG@16(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:24:7: error: stray ‘@’ in program GETARG@16(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:24:1: error: ‘GETARG’ undeclared (first use in this function) GETARG@16(); ^ /tmp/petsc-DZOa4u/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-DZOa4u/config.functions/conftest.c:24:8: error: expected ‘;’ before numeric constant GETARG@16(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: gcc -c -o /tmp/petsc-DZOa4u/config.functions/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-DZOa4u/config.functions/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.functions/conftest.o -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -Wl,-rpath,/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.functions/conftest.o: In function `main': /tmp/petsc-DZOa4u/config.functions/conftest.c:24: undefined reference to `_gfortran_iargc' /tmp/petsc-DZOa4u/config.functions/conftest.c:24:(.text+0xe): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_gfortran_iargc' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configureCPURelax from config.atomics(/home/semih/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-DZOa4u/config.atomics Executing: gcc -c -o /tmp/petsc-DZOa4u/config.atomics/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/home/semih/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: gcc -c -o /tmp/petsc-DZOa4u/config.atomics/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.atomics/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: gcc -c -o /tmp/petsc-DZOa4u/config.atomics/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST configureMkdir from config.programs(/home/semih/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/semih/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/autoreconf...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/autoreconf...not found Checking for program /cygdrive/c/MSMPI/Bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/autoreconf...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/autoreconf...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/autoreconf...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/autoreconf...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/autoreconf...not found Checking for program /cygdrive/c/Windows/system32/autoreconf...not found Checking for program /cygdrive/c/Windows/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/Wbem/autoreconf...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/autoreconf...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/autoreconf...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/autoreconf...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/autoreconf...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/autoreconf...not found Checking for program /home/semih/autoreconf...not found Checking for program /home/semih/petsc/bin/win32fe/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/home/semih/petsc/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-DZOa4u/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-DZOa4u/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-DZOa4u/config.programs/diff1" "/tmp/petsc-DZOa4u/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/semih/ps...not found Checking for program /home/semih/petsc/bin/win32fe/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMake from config.packages.make(/home/semih/petsc/config/BuildSystem/config/packages/make.py:60) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:60) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/gmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/gmake...not found Checking for program /cygdrive/c/MSMPI/Bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/gmake...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/gmake...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/gmake...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/gmake...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/gmake...not found Checking for program /cygdrive/c/Windows/system32/gmake...not found Checking for program /cygdrive/c/Windows/gmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/gmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/gmake...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/gmake...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/gmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/gmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/gmake...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/gmake...not found Checking for program /home/semih/gmake...not found Checking for program /home/semih/petsc/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/home/semih/petsc/config/BuildSystem/config/packages/make.py:78) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:78) Check for GNU make Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Executing: /usr/bin/strings /usr/bin/make stdout: ET$`H ffff. WVSH D$ H 0[^_ ffffff. T$ L D$(H L$ H L$ H D$(H T$ H T$(H \$ H \$(H t$ H T$ H \$ H tE<[t,~O<\ UAWAVAUATWVSH L$:H L$(H L$"H D$0D |$8H t$(H L$PD D$HD T$@E1 |$ H L$(D L$"H D$0H t$(H |$ H L$HD D$@M T$8H D$`H t$`I U$A9 [^_A\A]A^A_] WVSH [^_ [^_ UWVSH [^_] l$ A [^_] [^_] WVSH D$0% D$hH T$`H H;Cp 3tlH UAWAVAUATWVSH @ H9G H D$ H eH[^_A\A]A^A_] D;%@ t$@H l$@M AWAVAUATUWVSH ([^_]A\A]A^A_ \u#A c+D9 <@u,H ffff. WVSH [^_ WVSH [^_ L$HE1 @* H ffff. WVSH @[^_ ffff. ffff. ffff. ffff. ffff. fffff. WVSH [^_ [^_ fffff. fff. AWAVAUATUWVSH H[^_]A\A]A^A_ T$0I D$0M D$ H T$ L t$0f T$(I UWVSH L$0H T$0H H;0t [^_] T$@H D$@H H;8t*H [^_] [^_] fff. UWVSH toH9 L$ L [^_] [^_] ffffff. UWVSH L$0L [^_] UWVSH L$ L [^_] [^_] fffff. ffffff. AWAVAUATUWVSH L$(H L$(H T$ M 8[^_]A\A]A^A_ D$,A9 D$,A UWVSH [^_] L$ L [^_] [^_] UAWAVAUATWVSH [^_A\A]A^A_] {u`A t$0A T$ L D$(M UWVSH 8[^_] L$,t 8[^_] 8[^_] @$E1 ffffff. AWAVAUATUWVSH D$(H D$(H C$@t+ C$u{L 8[^_]A\A]A^A_ UWVSH ([^_] ([^_] fffff. ffff. ffff. WVSH |$ I 0[^_ t$ I |$ I |$ I |$ I t$ I <.u1f L$(H T$ H ATUWVSH L$(H T$ H [^_]A\ [^_]A\ AUATUWVSH T$8H9 T$0H l$ M CpH;Gpv [^_]A\A] [^_]A\A] ffff. AWAVAUATUWVSH 8[^_]A\A]A^A_ 8[^_]A\A]A^A_ D$(H fffff. L$@H L$@H UAWAVAUATWVSH t$0H |$(I D$ H [^_A\A]A^A_] AWAVAUATUWVSH H[^_]A\A]A^A_ ATUWVSH H;3t [^_]A\ ffff. L$HH D$8D D$0D D$HM WVSH |$ H P[^_ P[^_ T$ H u%LcD$(H ffffff. 8H*tR @*< \$ H ffff. AWAVAUATUWVSH D$(H T$ Hc H;l$(v 8[^_]A\A]A^A_ fffff. fffff. ffff. ffff. fffff. UWVSH |$$H t$(H D$$H 8[^_] AVAUATUWVSH t$(L l$0L d$,H l$8H D$0H D$8L D$(H D$,H @[^_]A\A]A^ T$$H L$(H D$$H AWAVAUATUWVSH l$4H |$+D |$8A D$4D ugL9 H[^_]A\A]A^A_ AVAUATUWVSH |$$H t$(H D$$D 0[^_]A\A]A^ AWAVAUATUWVSH d$$H D$$H D$$H 8[^_]A\A]A^A_ WVSH t$(H t$0H P[^_ ([^I tMH L$(H T$0H UWVSH ([^_] L$(H T$$H UAVAUATWVSH l$ L L9 h[^_]A\A]A^A_ D$8A D$@L D$HH T$0H T$0L D$HH D$0L T$HI D$0L T$HI L$@L T$0H UWVSH L$"H D$ $ D$!( [^_] t$ L t8E ATUWVSH \u I u-H9 \t%E [^_]A\ tVH9 ffffff. AWAVAUATUWVSH D$(I D$(H 8[^_]A\A]A^A_ fffff. fffff. t I) UWVSH ([^_] ffffff. ffffff. WVSH [^_ T$HH T$HL D$PL L$XH UWVSH ([^_] ATUWVSH 0[^_]A\ D$ L ATUWVSH [^_]A\ t*E1 9D$ u H9D$( D$PL L$XH T$PH D$PL L$XH T$PH ffffff. ffffff. WVSH |$ H 0[^_ D$PL L$XH T$PH UAWAVAUATWVSH [^_A\A]A^A_] t&A8 l$ L )t*A ,t)H l$ L )tKH fff. AWAVAUATUWVSH D$ A D$ E1 \u A T$(A 8[^_]A\A]A^A_ AVAUATUWVSH i(E1 [^_]A\A]A^ [^_]A\A]A^ tJH9 u)E1 :\u A AWAVAUATUWVSH l$ A X[^_]A\A]A^A_ ffff. UWVSH tG~yA ?t0A [^_] $uAA t1E1 UAWAVAUATWVSH \u A t^HcE t$ L [^_A\A]A^A_] AWAVAUATUWVSH D$@L l$XE1 D$XH l$(L t$ H h[^_]A\A]A^A_ D$XH9 D$XH T$@L @ L9 T$XL D$(H D$@H F(t? L$HH t$X1 D$XH UWVSH t^ u"H D$XH D$hL D$XA E&f% |$XH \uUH L$xE1 |$XD d$xL t|H9 d$xL d$xL ffffff. AUATUWVSH L$XH D$Pt L$PH |$XA D$@H D$8H D$0H L$PH x[^_]A\A] D$Pt x[^_]A\A] UWVSH |$DH D$HA T$HA X[^_] X[^_] X[^_] D$XH \$PH \$HH \$@H D$hH T$pH L$@H T$ H D$hH UWVS T$`L D$hH [^_]A\ D$hH T$`H [^_]A\ [^_]A\ t$0D D$0A L$(H T$ L L$(H T$ L D$ L D$ L UAWAVAUATWVSH [^_A\A]A^A_] t$ M ffffff. ATUWVSH [^_]A\ [^_]A\ tZL9 uWH D$/xL d$/A x}E1 AWAVAUATUWVSH X[^_]A\A]A^A_ L$(H L$0M T$8H D$LA D$(){}$`^~! /bin/sh cyggcj-14.dll _Jv_RegisterClasses attempt to use unsupported feature: '%s' touch: Archive '%s' does not exist touch: '%s' is not a valid archive touch: touch: Member '%s' does not exist in '%s' touch: Bad return code from ar_member_touch on '%s' ! ARFILENAMES/ *** [%s] Archive member '%s' may be bogus; not deleted *** Archive member '%s' may be bogus; not deleted *** [%s] Deleting file '%s' *** Deleting file '%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from '%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a GNUMAKEFLAGS $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. unterminated variable reference warning: undefined variable '%.*s' Recursive variable '%s' references itself (eventually) %s: Field '%s' not cached: %s name hname vpath stem Recipe was specified for file '%s' at %s:%lu, Recipe for file '%s' was found by implicit rule search, but '%s' is now considered the same file as '%s'. Recipe for '%s' will be ignored in favor of the one for '%s'. can't rename single-colon '%s' to double-colon '%s' can't rename double-colon '%s' to single-colon '%s' *** Deleting intermediate file '%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Builtin rule # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: '%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. # Needs to be updated (-q is set). # Failed to be updated. # Files # files hash-table stats: insufficient number of arguments (%d) to function '%s' unimplemented on this platform: function '%s' open: %s: %s write: %s: %s Invalid file operation: %s Internal error: func_error: '%s' warning: undefined variable '%.*s' undefined default environment file environment override command line override automatic recursive simple %s: '%s' non-numeric first argument to 'wordlist' function non-numeric second argument to 'wordlist' function invalid first argument to 'wordlist' function: '%d' non-numeric first argument to 'word' function first argument to 'word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function '%s': missing '%c' Empty function name Invalid function name: %s Function name too long: %s Invalid minimum argument count (%d) for function %s Invalid maximum argument count (%d) for function %s abspath addprefix addsuffix basename notdir subst suffix filter filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option '%s' is ambiguous %s: option '--%s' doesn't allow an argument %s: option '%c%s' doesn't allow an argument %s: option '%s' requires an argument %s: unrecognized option '--%s' %s: unrecognized option '%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option '-W %s' is ambiguous %s: option '-W %s' doesn't allow an argument Avoiding implicit rule recursion. Stem too long: '%.*s'. Trying pattern rule with stem '%.*s'. Rejecting impossible rule prerequisite '%s'. Rejecting impossible implicit prerequisite '%s'. Trying rule prerequisite '%s'. Trying implicit prerequisite '%s'. Found prerequisite '%s' as VPATH '%s' Looking for a rule with intermediate file '%s'. Looking for an implicit rule for '%s'. Looking for archive-member implicit rule for '%s'. *** (core dumped) (ignored) %s:%lu %s: recipe for target '%s' failed %s[%s] Error %d%s %s[%s] %s%s%s INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). %s (line %d) Bad shell context (!unixy && !batch_mode_shell) /netrel/src/make-4.0-2/job.c %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) fork *** Waiting for unfinished jobs.... (remote) Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s Cleaning up temp batch file %s failed (%d) .DELETE_ON_ERROR Removing child %p PID %s%s from chain. cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) Putting child %p (%s) PID %s%s on the chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target '%s' does not exist %s: update target '%s' due to: %s break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while bash rksh dash Empty symbol name for load: %s $(.LOADED) Loading symbol %s from %s Failed to open global symbol table: %s plugin_is_GPL_compatible Loaded object %s is not declared to be GPL compatible Failed to load symbol %s from %s: %s .LOADED dlclose %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 1988-2013 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. empty string invalid as file name MAKECMDGOALS # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! MFLAGS MAKEFLAGS the '%s%s' option requires a non-empty string argument the '-%c' option requires a positive integer argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to unknown debug level specification '%s' none line target recurse unknown output-sync type '%s' internal error: multiple --sync-mutex options /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver output-sync check-symlink load .FEATURES MAKE_RESTARTS SHELL GNUMAKEFLAGS MAKELEVEL internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string '%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add '+' to parent make rule. MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES CURDIR .DEFAULT .DEFAULT_GOAL Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) -*-eval-flags-*- SUFFIXES creating jobs pipe init jobserver pipe Updating makefiles.... Makefile '%s' might loop; not remaking it. Failed to remake makefile '%s'. Included makefile '%s' was not found. Makefile '%s' was not found chdir Re-executing[%u]: MAKELEVEL= %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%s%u unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. Couldn't change back to original directory. quiet stop new-file assume-new assume-old max-load dry-run recon makefile always-make environment-overrides help ignore-errors keep-going check-symlink-times just-print print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version print-directory directory file include-dir jobs load-average old-file output-sync what-if basic debug jobserver-fds trace no-print-directory warn-undefined-variables eval sync-mutex Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -O[TYPE], --output-sync[=TYPE] Synchronize output of parallel jobs by TYPE. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. virtual memory exhausted lseek() read() fwrite() %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory '%s' %s: Leaving directory '%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory '%s' %s[%u]: Leaving directory '%s' fcntl() %s: %s tmpfile %s: %s[%u]: %s:%lu: write error: %s write error %s%s: %s %s:%lu: *** %s: *** %s[%u]: *** . Stop. ifdef ifndef ifeq ifneq else endif extraneous text after '%s' directive extraneous '%s' only one 'else' per conditional warning: NUL character seen; rest of line ignored export override private undefine define prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS ARFLAGS CFLAGS fort77 -O 1 FFLAGS SCCSGETFLAGS .SECONDEXPANSION .ONESHELL target '%s' doesn't match the target pattern target file '%s' has both : and :: entries target '%s' given more than once in the same rule warning: overriding recipe for target '%s' warning: ignoring old recipe for target '%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted Skipping UTF-8 BOM in makefile '%s' Skipping UTF-8 BOM in makefile buffer empty variable name extraneous text after 'define' directive missing 'endef', unterminated 'define' endef extraneous text after 'endef' directive invalid syntax in conditional unexport vpath include -include sinclude %s: %s load -load %s: failed to load recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no '%%' missing 'endif' .DEFAULT_GOAL Reading makefile '%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) GNUmakefile makefile Makefile /usr/include /usr/gnu/include /usr/local/include stat: lstat: readlink: *** %sNo rule to make target '%s'%s %sNo rule to make target '%s', needed by '%s'%s $(.LIBPATTERNS) .LIBPATTERNS element '%s' is not a pattern %s/%s %.2g Warning: File '%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Found an implicit rule for '%s'. No implicit rule found for '%s'. Using default commands for '%s'. Circular %s <- %s dependency dropped. Pruning file '%s'. Considering target file '%s'. Recently tried and failed to update file '%s'. File '%s' was considered already. Still updating file '%s'. Finished updating file '%s'. File '%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file '%s' has a high resolution time stamp Using default recipe for '%s'. Finished prerequisites of target file '%s'. The prerequisites of '%s' are being made. Giving up on target file '%s'. Target '%s' not remade because of errors. Prerequisite '%s' is order-only for target '%s'. Prerequisite '%s' of target '%s' does not exist. Prerequisite '%s' is newer than target '%s'. Prerequisite '%s' is older than target '%s'. Target '%s' is double-colon and has no prerequisites. No recipe for '%s' and no prerequisites actually changed. Making '%s' due to always-make flag. No need to remake target '%s' ; using VPATH name '%s' Must remake target '%s'. Ignoring VPATH name '%s'. Recipe of '%s' is being run. Failed to remake target file '%s'. Successfully remade target file '%s'. Target file '%s' needs to be remade under -q. Nothing to be done for '%s'. '%s' is up to date. /lib /usr/lib (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u %s No strcache buffers %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: automatic default environment makefile environment under -e command line 'override' directive private (from '%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES MAKELEVEL %s%s%s MAKE_VERSION MAKE_HOST SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values # No pattern-specific variable values. %s : # %u pattern-specific variable values x86_64-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths # No 'vpath' search paths. vpath %s %s%c # %u 'vpath' search paths. # No general ('VPATH' variable) search path. # General ('VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% Y@POSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit HOME next != NULL /netrel/src/make-4.0-2/glob/glob.c glob GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) GCC: (GNU) 4.8.1 20130531 (Fedora Cygwin 4.8.1-1) __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0 _exit _impure_ptr abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dlclose dlerror dll_dllcrt0 dlopen dlsym dup2 environ execvp exit fclose fcntl fdopen fflush fgets fileno fopen fork fprintf fputc fputs fread free fstat ftruncate fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime lseek lstat malloc memcmp memcpy memmove memset mkstemp open opendir perror pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf stat stpcpy strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tmpfile tolower unlink vsnprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_setlocale libintl_textdomain GetModuleHandleA GetProcAddress cygwin1.dll cygintl-8.dll KERNEL32.dll make.exe.dbg Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/home/semih/petsc/config/BuildSystem/config/packages/make.py:122) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:122) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:747) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:747) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Executing: uname -s stdout: CYGWIN_NT-6.1 Executing: uname -s stdout: CYGWIN_NT-6.1 Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.1 Looking for MPI in directory starting with mpich Found a copy of MPI in mpich-3.1 Pushing language C All intermediate test results are stored in /tmp/petsc-DZOa4u/config.packages.MPI Popping language C Pushing language Cxx Popping language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1 Do not need to rebuild MPI Deleting "CC" Deleting "CXX" ================================================================================ TEST printEnvVariables from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1515) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1515) **** printenv **** LIB=C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Windows Kits\8.0\lib\win8\um\x64;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB;C:\Program Files (x86)\Windows Kits\8.0\lib\win8\um\x86; VS100COMNTOOLS=c:\Program Files (x86)\Microsoft Visual Studio 10.0\Common7\Tools\ INTEL_64_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\compiler\lib\intel64 COMPUTERNAME=SEMIH-PC INTEL_32_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\compiler\lib\ia32 !C:=C:\cygwin64\bin INFOPATH=/usr/local/info:/usr/share/info:/usr/info SHELL=/bin/bash WindowsSdkDir_35=C:\Program Files (x86)\Microsoft SDKs\Windows\v7.0A\Bin\ CommonProgramFiles(x86)=C:\Program Files (x86)\Common Files USERDOMAIN=semih-PC FrameworkVersion64=v4.0.30319 FrameworkDir=C:\Windows\Microsoft.NET\Framework64 PROFILEREAD=true COMSPEC=C:\Windows\system32\cmd.exe CUDA_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\ MSMPI_LIB64=C:\MSMPI\Lib\amd64\ ICPP_COMPILER12=C:\Program Files (x86)\Intel\ComposerXE-2011\ WindowsSdkDir_old=C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0A\ VTUNE_AMPLIFIER_XE_2011_DIR=C:\Program Files (x86)\Intel\VTune Amplifier XE 2011\ INSPECTOR_XE_2011_DIR=C:\Program Files (x86)\Intel\Inspector XE 2011\ HOMEDRIVE=C: SYSTEMDRIVE=C: HOSTNAME=semih-PC CUDA_BIN_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\\bin PROCESSOR_LEVEL=6 FrameworkDIR32=C:\Windows\Microsoft.NET\Framework\ OS=Windows_NT MPICH2_32_LIB=C:\Program Files (x86)\MPICH2\lib FSHARPINSTALLDIR=C:\Program Files (x86)\Microsoft SDKs\F#\3.0\Framework\v4.0\ Platform=X64 CommandPromptType=Native USER=semih MPICH2_64_LIB=C:\Program Files\MPICH2\lib PS1=\[\e]0;\w\a\]\n\[\e[32m\]\u@\h \[\e[33m\]\w\[\e[0m\]\n\$ TEMP=/tmp SHLVL=1 CUDA_LIB_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\\lib\x64 DevEnvDir=C:\Program Files (x86)\Microsoft Visual Studio 11.0\Common7\IDE\ HOMEPATH=\Users\semih WindowsSdkDir=C:\Program Files (x86)\Windows Kits\8.0\ FrameworkVersion=v4.0.30319 MPICH2_64_INC=C:\Program Files\MPICH2\include LOGONSERVER=\\SEMIH-PC BOOST_32_LIB=C:\Program Files (x86)\boost_1_47_0\lib32 PRINTER=PDFCreator SESSIONNAME=Console INCLUDE=C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Windows Kits\8.0\include\shared;C:\Program Files (x86)\Windows Kits\8.0\include\um;C:\Program Files (x86)\Windows Kits\8.0\include\winrt;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\INCLUDE;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\INCLUDE;C:\Program Files (x86)\Windows Kits\8.0\include\shared;C:\Program Files (x86)\Windows Kits\8.0\include\um;C:\Program Files (x86)\Windows Kits\8.0\include\winrt; _=./configure CUDA_PATH_V4_0=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\ APPDATA=C:\Users\semih\AppData\Roaming BOOST_INC=C:\Program Files (x86)\boost_1_47_0 TMP=/tmp PSModulePath=C:\Windows\system32\WindowsPowerShell\v1.0\Modules\ VS110COMNTOOLS=C:\Program Files (x86)\Microsoft Visual Studio 11.0\Common7\Tools\ INTEL_LICENSE_FILE=C:\Program Files (x86)\Common Files\Intel\Licenses ADINAHOME89=C:\ADINA89 COMMONPROGRAMFILES=C:\Program Files\Common Files LIBPATH=C:\Windows\Microsoft.NET\Framework64\v4.0.30319;C:\Windows\Microsoft.NET\Framework64\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB\amd64;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB\amd64;C:\Program Files (x86)\Windows Kits\8.0\References\CommonConfiguration\Neutral;C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0\ExtensionSDKs\Microsoft.VCLibs\11.0\References\CommonConfiguration\neutral;C:\Windows\Microsoft.NET\Framework\v4.0.30319;C:\Windows\Microsoft.NET\Framework\v3.5;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\LIB;C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ATLMFC\LIB;C:\Program Files (x86)\Windows Kits\8.0\References\CommonConfiguration\Neutral;C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0\ExtensionSDKs\Microsoft.VCLibs\11.0\References\CommonConfiguration\neutral; HOME=/home/semih INTEL_INC=C:\Program Files (x86)\Intel\ComposerXE-2011\compiler\include LANG=en_US.UTF-8 ProgramData=C:\ProgramData PROCESSOR_ARCHITECTURE=AMD64 ALLUSERSPROFILE=C:\ProgramData VisualStudioVersion=11.0 ProgramFiles(x86)=C:\Program Files (x86) ProgramW6432=C:\Program Files USERNAME=semih FrameworkDIR64=C:\Windows\Microsoft.NET\Framework64 PROMPT=$P$G FrameworkVersion32=v4.0.30319 TBB30_INSTALL_DIR=C:\Program Files (x86)\Intel\ComposerXE-2011\tbb MPICH2_32_BIN=C:\Program Files (x86)\MPICH2\bin PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC;.tcl CommonProgramW6432=C:\Program Files\Common Files WINDIR=C:\Windows Framework35Version=v3.5 NUMBER_OF_PROCESSORS=8 MPICH2_32_INC=C:\Program Files (x86)\MPICH2\include MSMPI_INC=C:\MSMPI\Inc\ PUBLIC=C:\Users\Public USERPROFILE=C:\Users\semih IFORT_COMPILER12=C:\Program Files (x86)\Intel\ComposerXE-2011\ CUDA_INC_PATH=C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v4.0\\include ORIGINAL_PATH=/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/MSMPI/Bin:/cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Windows Live/Shared:/cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64:/cygdrive/c/Program Files/MATLAB/R2014a/bin:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit:/cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 30 Stepping 5, GenuineIntel PROGRAMFILES=C:\Program Files PROCESSOR_REVISION=1e05 PATH=/usr/local/bin:/usr/bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64:/cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow:/cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools:/cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319:/cygdrive/c/Windows/Microsoft.NET/Framework/v3.5:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages:/cygdrive/c/Program Files (x86)/HTML Help Workshop:/cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools:/cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin:/cygdrive/c/MSMPI/Bin:/cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live:/cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler:/cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin:/cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl:/cygdrive/c/Windows/system32:/cygdrive/c/Windows:/cygdrive/c/Windows/System32/Wbem:/cygdrive/c/Windows/System32/WindowsPowerShell/v1.0:/cygdrive/c/Program Files (x86)/Windows Live/Shared:/cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64:/cygdrive/c/Program Files/MATLAB/R2014a/bin:/cygdrive/c/Program Files/TortoiseSVN/bin:/cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit:/cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn MSMPI_BIN=C:\Program Files\Microsoft HPC Pack 2008 R2\Bin\ TERM=cygwin TZ=Europe/Bucharest MKL_32_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\mkl\lib\ia32 VSINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 11.0\ MPICH2_64_BIN=C:\Program Files\MPICH2\bin !::=::\ LOCALAPPDATA=C:\Users\semih\AppData\Local ExtensionSdkDir=C:\Program Files (x86)\Microsoft SDKs\Windows\v8.0\ExtensionSDKs SYSTEMROOT=C:\Windows MKL_INC=C:\Program Files (x86)\Intel\ComposerXE-2011\mkl\include EXECIGNORE=*.dll MKL_64_LIB=C:\Program Files (x86)\Intel\ComposerXE-2011\mkl\lib\intel64 FP_NO_HOST_CHECK=NO OLDPWD=/home/semih PWD=/home/semih/petsc BOOST_64_LIB=C:\Program Files (x86)\boost_1_47_0\lib64 MSMPI_LIB32=C:\MSMPI\Lib\i386\ VCINSTALLDIR=C:\Program Files (x86)\Microsoft Visual Studio 11.0\VC\ ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1522) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1522) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1487) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1487) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1506) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1506) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:398) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:398) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:408) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:408) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:524) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:524) Locate a functional C compiler Checking for program /home/semih/petsc/arch-mswin-c-debug/bin/mpicc...found Defined make macro "CC" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc" Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:559) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:559) Locate a functional C preprocessor Checking for program /home/semih/petsc/arch-mswin-c-debug/bin/mpicc...found Defined make macro "CPP" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E" Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define STDC_HEADERS 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 #define _STDLIB_H_ # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 355 "/usr/include/machine/ieeefp.h" 3 4 #define __IEEE_LITTLE_ENDIAN # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 13 "/usr/include/_ansi.h" 3 4 #define _ANSIDECL_H_ # 1 "/usr/include/newlib.h" 1 3 4 #define __NEWLIB_H__ 1 #define _NEWLIB_VERSION "2.1.0" #define _WANT_IO_C99_FORMATS 1 #define _WANT_IO_LONG_LONG 1 #define _WANT_IO_LONG_DOUBLE 1 #define _WANT_IO_POS_ARGS 1 #define _MB_CAPABLE 1 #define _MB_LEN_MAX 8 # 54 "/usr/include/newlib.h" 3 4 #define _ATEXIT_DYNAMIC_ALLOC 1 #define _HAVE_LONG_DOUBLE 1 #define _HAVE_CC_INHIBIT_LOOP_TO_LIBCALL 1 #define _FVWRITE_IN_STREAMIO 1 #define _FSEEK_OPTIMIZATION 1 #define _WIDE_ORIENT 1 #define _UNBUF_STREAM_OPT 1 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 #define __SYS_CONFIG_H__ # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 22 "/usr/include/sys/features.h" 3 4 #define _SYS_FEATURES_H # 31 "/usr/include/sys/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) #define __GNUC_PREREQ__(ma,mi) __GNUC_PREREQ(ma, mi) # 109 "/usr/include/sys/features.h" 3 4 #define _POSIX_VERSION 200112L #define _POSIX2_VERSION 200112L #define _XOPEN_VERSION 600 #define _POSIX_ADVISORY_INFO 200112L #define _POSIX_CHOWN_RESTRICTED 1 #define _POSIX_CLOCK_SELECTION 200112L #define _POSIX_CPUTIME 200112L #define _POSIX_FSYNC 200112L #define _POSIX_IPV6 200112L #define _POSIX_JOB_CONTROL 1 #define _POSIX_MAPPED_FILES 200112L #define _POSIX_MEMLOCK_RANGE 200112L #define _POSIX_MEMORY_PROTECTION 200112L #define _POSIX_MESSAGE_PASSING 200112L #define _POSIX_MONOTONIC_CLOCK 200112L #define _POSIX_NO_TRUNC 1 #define _POSIX_PRIORITY_SCHEDULING 200112L #define _POSIX_RAW_SOCKETS 200112L #define _POSIX_READER_WRITER_LOCKS 200112L #define _POSIX_REALTIME_SIGNALS 200112L #define _POSIX_REGEXP 1 #define _POSIX_SAVED_IDS 1 #define _POSIX_SEMAPHORES 200112L #define _POSIX_SHARED_MEMORY_OBJECTS 200112L #define _POSIX_SHELL 1 #define _POSIX_SPIN_LOCKS 200112L #define _POSIX_SYNCHRONIZED_IO 200112L #define _POSIX_THREAD_ATTR_STACKADDR 200112L #define _POSIX_THREAD_ATTR_STACKSIZE 200112L #define _POSIX_THREAD_CPUTIME 200112L #define _POSIX_THREAD_PRIORITY_SCHEDULING 200112L #define _POSIX_THREAD_PROCESS_SHARED 200112L #define _POSIX_THREAD_SAFE_FUNCTIONS 200112L #define _POSIX_THREADS 200112L #define _POSIX_TIMERS 1 #define _POSIX_VDISABLE '\0' #define _POSIX2_C_BIND 200112L #define _POSIX2_C_DEV 200112L #define _POSIX2_CHAR_TERM 200112L # 173 "/usr/include/sys/features.h" 3 4 #define _POSIX2_SW_DEV 200112L #define _POSIX2_UPE 200112L #define _POSIX_V6_ILP32_OFF32 -1 #define _POSIX_V6_ILP32_OFFBIG -1 #define _POSIX_V6_LP64_OFF64 1 #define _POSIX_V6_LPBIG_OFFBIG 1 #define _XBS5_ILP32_OFF32 _POSIX_V6_ILP32_OFF32 #define _XBS5_ILP32_OFFBIG _POSIX_V6_ILP32_OFFBIG #define _XBS5_LP64_OFF64 _POSIX_V6_LP64_OFF64 #define _XBS5_LPBIG_OFFBIG _POSIX_V6_LPBIG_OFFBIG #define _XOPEN_CRYPT 1 #define _XOPEN_ENH_I18N 1 #define _XOPEN_SHM 1 # 203 "/usr/include/sys/features.h" 3 4 #define __STDC_ISO_10646__ 200305L # 6 "/usr/include/sys/config.h" 2 3 4 # 212 "/usr/include/sys/config.h" 3 4 #define _POINTER_INT long #undef __RAND_MAX #define __RAND_MAX 0x7fffffff # 1 "/usr/include/cygwin/config.h" 1 3 4 # 20 "/usr/include/cygwin/config.h" 3 4 #define _CYGWIN_CONFIG_H #define __DYNAMIC_REENT__ # 60 "/usr/include/cygwin/config.h" 3 4 #define __SYMBOL_PREFIX #define _SYMSTR(x) __SYMBOL_PREFIX #x #define __FILENAME_MAX__ 4096 #define _READ_WRITE_RETURN_TYPE _ssize_t #define _READ_WRITE_BUFSIZE_TYPE size_t #define __LARGE64_FILES 1 #define __USE_INTERNAL_STAT64 1 #define __LINUX_ERRNO_EXTENSIONS__ 1 #define _MB_EXTENDED_CHARSETS_ALL 1 #define __HAVE_LOCALE_INFO__ 1 #define __HAVE_LOCALE_INFO_EXTENDED__ 1 #define _WANT_C99_TIME_FORMATS 1 #define _GLIBC_EXTENSION 1 #define _STDIO_BSD_SEMANTICS 1 #define __TM_GMTOFF tm_gmtoff #define __TM_ZONE tm_zone #define __EXPORT #define __IMPORT __declspec(dllimport) #define DEFAULT_LOCALE "C.UTF-8" # 227 "/usr/include/sys/config.h" 2 3 4 #define __USE_XOPEN2K 1 # 278 "/usr/include/sys/config.h" 3 4 #define _MB_EXTENDED_CHARSETS_ISO 1 #define _MB_EXTENDED_CHARSETS_WINDOWS 1 # 17 "/usr/include/_ansi.h" 2 3 4 #define _HAVE_STDC # 44 "/usr/include/_ansi.h" 3 4 #define _BEGIN_STD_C #define _END_STD_C #define _NOTHROW #define _PTR void * #define _AND , #define _NOARGS void #define _CONST const #define _VOLATILE volatile #define _SIGNED signed #define _DOTS , ... #define _VOID void #define _EXFUN_NOTHROW(name,proto) __cdecl name proto _NOTHROW #define _EXFUN(name,proto) __cdecl name proto #define _EXPARM(name,proto) (* __cdecl name) proto #define _EXFNPTR(name,proto) (__cdecl * name) proto #define _DEFUN(name,arglist,args) name(args) #define _DEFUN_VOID(name) name(_NOARGS) #define _CAST_VOID (void) #define _LONG_DOUBLE long double #define _LONG_LONG_TYPE long long #define _PARAMS(paramlist) paramlist # 105 "/usr/include/_ansi.h" 3 4 #define _ATTRIBUTE(attrs) __attribute__ (attrs) # 127 "/usr/include/_ansi.h" 3 4 #define _ELIDABLE_INLINE extern __inline__ _ATTRIBUTE ((__always_inline__)) #define _NOINLINE __attribute__ ((__noinline__)) #define _NOINLINE_STATIC _NOINLINE static # 12 "/usr/include/stdlib.h" 2 3 4 #define __need_size_t #define __need_wchar_t #define __need_NULL # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 184 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_size_t # 263 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define __wchar_t__ #define __WCHAR_T__ #define _WCHAR_T #define _T_WCHAR_ #define _T_WCHAR #define __WCHAR_T #define _WCHAR_T_ #define _BSD_WCHAR_T_ #define _WCHAR_T_DEFINED_ #define _WCHAR_T_DEFINED #define _WCHAR_T_H #define ___int_wchar_t_h #define __INT_WCHAR_T_H #define _GCC_WCHAR_T #define _WCHAR_T_DECLARED # 290 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef _BSD_WCHAR_T_ # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 343 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL # 17 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 11 "/usr/include/sys/reent.h" 3 4 #define _SYS_REENT_H_ # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 39 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define _STDDEF_H #define _STDDEF_H_ #define _ANSI_STDDEF_H # 136 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define _PTRDIFF_T #define _T_PTRDIFF_ #define _T_PTRDIFF #define __PTRDIFF_T #define _PTRDIFF_T_ #define _BSD_PTRDIFF_T_ #define ___int_ptrdiff_t_h #define _GCC_PTRDIFF_T typedef long int ptrdiff_t; # 158 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 234 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_size_t # 343 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 10 "/usr/include/sys/_types.h" 3 4 #define _SYS__TYPES_H # 1 "/usr/include/machine/_types.h" 1 3 4 #define _MACHINE__TYPES_H # 1 "/usr/include/machine/_default_types.h" 1 3 4 #define _MACHINE__DEFAULT_TYPES_H # 15 "/usr/include/machine/_default_types.h" 3 4 #define __EXP(x) __ ##x ##__ # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; #define ___int8_t_defined 1 typedef short int __int16_t; typedef short unsigned int __uint16_t; #define ___int16_t_defined 1 # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; #define ___int32_t_defined 1 # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; #define ___int64_t_defined 1 # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; #define ___int_least8_t_defined 1 # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; #define ___int_least16_t_defined 1 # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; #define ___int_least32_t_defined 1 # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; #define ___int_least64_t_defined 1 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 214 "/usr/include/machine/_default_types.h" 3 4 #undef __EXP # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 12 "/usr/include/sys/lock.h" 3 4 #define _SYS_LOCK_H_ typedef void *_LOCK_T; #define _LOCK_RECURSIVE_T _LOCK_T #define _LOCK_T_RECURSIVE_INITIALIZER ((_LOCK_T)18) #define _LOCK_T_INITIALIZER ((_LOCK_T)19) #define __LOCK_INIT(CLASS,NAME) CLASS _LOCK_T NAME = _LOCK_T_INITIALIZER; #define __LOCK_INIT_RECURSIVE(CLASS,NAME) CLASS _LOCK_T NAME = _LOCK_T_RECURSIVE_INITIALIZER; #define __lock_init(__lock) __cygwin_lock_init(&__lock) #define __lock_init_recursive(__lock) __cygwin_lock_init_recursive(&__lock) #define __lock_close(__lock) __cygwin_lock_fini(&__lock) #define __lock_close_recursive(__lock) __cygwin_lock_fini(&__lock) #define __lock_acquire(__lock) __cygwin_lock_lock(&__lock) #define __lock_acquire_recursive(__lock) __cygwin_lock_lock(&__lock) #define __lock_try_acquire(lock) __cygwin_lock_trylock(&__lock) #define __lock_try_acquire_recursive(lock) __cygwin_lock_trylock(&__lock) #define __lock_release(__lock) __cygwin_lock_unlock(&__lock) #define __lock_release_recursive(__lock) __cygwin_lock_unlock(&__lock) void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 54 "/usr/include/sys/_types.h" 3 4 #define unsigned signed typedef long signed int _ssize_t; #undef unsigned # 66 "/usr/include/sys/_types.h" 3 4 #define __need_wint_t # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 158 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 234 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_size_t # 343 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_wchar_t #define _WINT_T typedef unsigned int wint_t; #undef __need_wint_t # 397 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 #define _NULL 0 #define __Long int typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; #define _ATEXIT_SIZE 32 struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; #define _ATEXIT_INIT {_NULL, 0, {_NULL}, {{_NULL}, {_NULL}, 0, 0}} #define _REENT_INIT_ATEXIT _NULL, _ATEXIT_INIT, # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 176 "/usr/include/sys/reent.h" 3 4 #define _REENT_SMALL_CHECK_INIT(ptr) struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 310 "/usr/include/sys/reent.h" 3 4 #define _RAND48_SEED_0 (0x330e) #define _RAND48_SEED_1 (0xabcd) #define _RAND48_SEED_2 (0x1234) #define _RAND48_MULT_0 (0xe66d) #define _RAND48_MULT_1 (0xdeec) #define _RAND48_MULT_2 (0x0005) #define _RAND48_ADD (0x000b) struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; #define _REENT_EMERGENCY_SIZE 25 #define _REENT_ASCTIME_SIZE 26 #define _REENT_SIGNAL_SIZE 24 # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { #define _N_LISTS 30 unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; #define _REENT_INIT(var) { 0, &(var).__sf[0], &(var).__sf[1], &(var).__sf[2], 0, "", 0, "C", 0, _NULL, _NULL, 0, _NULL, _NULL, 0, _NULL, { { 0, _NULL, "", {0, 0, 0, 0, 0, 0, 0, 0, 0}, 0, 1, { {_RAND48_SEED_0, _RAND48_SEED_1, _RAND48_SEED_2}, {_RAND48_MULT_0, _RAND48_MULT_1, _RAND48_MULT_2}, _RAND48_ADD }, {0, {0}}, {0, {0}}, {0, {0}}, "", "", 0, {0, {0}}, {0, {0}}, {0, {0}}, {0, {0}}, {0, {0}} } }, _REENT_INIT_ATEXIT _NULL, {_NULL, 0, _NULL} } # 697 "/usr/include/sys/reent.h" 3 4 #define _REENT_INIT_PTR(var) { memset((var), 0, sizeof(*(var))); (var)->_stdin = &(var)->__sf[0]; (var)->_stdout = &(var)->__sf[1]; (var)->_stderr = &(var)->__sf[2]; (var)->_current_locale = "C"; (var)->_new._reent._rand_next = 1; (var)->_new._reent._r48._seed[0] = _RAND48_SEED_0; (var)->_new._reent._r48._seed[1] = _RAND48_SEED_1; (var)->_new._reent._r48._seed[2] = _RAND48_SEED_2; (var)->_new._reent._r48._mult[0] = _RAND48_MULT_0; (var)->_new._reent._r48._mult[1] = _RAND48_MULT_1; (var)->_new._reent._r48._mult[2] = _RAND48_MULT_2; (var)->_new._reent._r48._add = _RAND48_ADD; } # 713 "/usr/include/sys/reent.h" 3 4 #define _REENT_CHECK_RAND48(ptr) #define _REENT_CHECK_MP(ptr) #define _REENT_CHECK_TM(ptr) #define _REENT_CHECK_ASCTIME_BUF(ptr) #define _REENT_CHECK_EMERGENCY(ptr) #define _REENT_CHECK_MISC(ptr) #define _REENT_CHECK_SIGNAL_BUF(ptr) #define _REENT_SIGNGAM(ptr) ((ptr)->_new._reent._gamma_signgam) #define _REENT_RAND_NEXT(ptr) ((ptr)->_new._reent._rand_next) #define _REENT_RAND48_SEED(ptr) ((ptr)->_new._reent._r48._seed) #define _REENT_RAND48_MULT(ptr) ((ptr)->_new._reent._r48._mult) #define _REENT_RAND48_ADD(ptr) ((ptr)->_new._reent._r48._add) #define _REENT_MP_RESULT(ptr) ((ptr)->_result) #define _REENT_MP_RESULT_K(ptr) ((ptr)->_result_k) #define _REENT_MP_P5S(ptr) ((ptr)->_p5s) #define _REENT_MP_FREELIST(ptr) ((ptr)->_freelist) #define _REENT_ASCTIME_BUF(ptr) ((ptr)->_new._reent._asctime_buf) #define _REENT_TM(ptr) (&(ptr)->_new._reent._localtime_buf) #define _REENT_EMERGENCY(ptr) ((ptr)->_emergency) #define _REENT_STRTOK_LAST(ptr) ((ptr)->_new._reent._strtok_last) #define _REENT_MBLEN_STATE(ptr) ((ptr)->_new._reent._mblen_state) #define _REENT_MBTOWC_STATE(ptr) ((ptr)->_new._reent._mbtowc_state) #define _REENT_WCTOMB_STATE(ptr) ((ptr)->_new._reent._wctomb_state) #define _REENT_MBRLEN_STATE(ptr) ((ptr)->_new._reent._mbrlen_state) #define _REENT_MBRTOWC_STATE(ptr) ((ptr)->_new._reent._mbrtowc_state) #define _REENT_MBSRTOWCS_STATE(ptr) ((ptr)->_new._reent._mbsrtowcs_state) #define _REENT_WCRTOMB_STATE(ptr) ((ptr)->_new._reent._wcrtomb_state) #define _REENT_WCSRTOMBS_STATE(ptr) ((ptr)->_new._reent._wcsrtombs_state) #define _REENT_L64A_BUF(ptr) ((ptr)->_new._reent._l64a_buf) #define _REENT_SIGNAL_BUF(ptr) ((ptr)->_new._reent._signal_buf) #define _REENT_GETDATE_ERR_P(ptr) (&((ptr)->_new._reent._getdate_err)) #define _Kmax (sizeof (size_t) << 3) #define __ATTRIBUTE_IMPURE_PTR__ extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); #define _REENT (__getreent()) #define _GLOBAL_REENT _global_impure_ptr #define _GLOBAL_ATEXIT (_GLOBAL_REENT->_atexit) # 19 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/machine/stdlib.h" 1 3 4 # 12 "/usr/include/machine/stdlib.h" 3 4 #define _MACHSTDLIB_H_ char *mkdtemp (char *); # 20 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 #define _NEWLIB_ALLOCA_H #undef alloca #define alloca(size) __builtin_alloca(size) # 22 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/cygwin/stdlib.h" 1 3 4 # 12 "/usr/include/cygwin/stdlib.h" 3 4 #define _CYGWIN_STDLIB_H # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 12 "/usr/include/cygwin/wait.h" 3 4 #define _CYGWIN_WAIT_H #define WAIT_ANY (pid_t)-1 #define WAIT_MYPGRP (pid_t)0 #define WNOHANG 1 #define WUNTRACED 2 #define WCONTINUED 8 #define __W_CONTINUED 0xffff #define __wait_status_to_int(w) (w) # 34 "/usr/include/cygwin/wait.h" 3 4 #define WIFEXITED(w) ((__wait_status_to_int(w) & 0xff) == 0) #define WIFSIGNALED(w) ((__wait_status_to_int(w) & 0x7f) > 0 && ((__wait_status_to_int(w) & 0x7f) < 0x7f)) #define WIFSTOPPED(w) ((__wait_status_to_int(w) & 0xff) == 0x7f) #define WIFCONTINUED(w) ((__wait_status_to_int(w) & 0xffff) == __W_CONTINUED) #define WEXITSTATUS(w) ((__wait_status_to_int(w) >> 8) & 0xff) #define WTERMSIG(w) (__wait_status_to_int(w) & 0x7f) #define WSTOPSIG WEXITSTATUS #define WCOREDUMP(w) (WIFSIGNALED(w) && (__wait_status_to_int(w) & 0x80)) # 15 "/usr/include/cygwin/stdlib.h" 2 3 4 __uint32_t arc4random(void); void arc4random_addrandom(unsigned char *, int); void arc4random_buf(void *, size_t); void arc4random_stir(void); __uint32_t arc4random_uniform(__uint32_t); const char *getprogname (void); void setprogname (const char *); Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:593) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:593) Locate a functional CUDA compiler Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/MSMPI/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/nvcc...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA Executing: nvcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 32512 stderr: nvcc fatal : nvcc cannot find a supported cl version. Only MSVC 8.0 and MSVC 9.0 are supported Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/nvcc...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/nvcc...not found Checking for program /cygdrive/c/MSMPI/Bin/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/nvcc...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/nvcc...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/nvcc...found Defined make macro "CUDAC" to "nvcc" Pushing language CUDA Executing: nvcc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cu Possible ERROR while running compiler: exit code 32512 stderr: nvcc fatal : nvcc cannot find a supported cl version. Only MSVC 8.0 and MSVC 9.0 are supported Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language CUDA Error testing CUDA compiler: Cannot compile CUDA with nvcc. Deleting "CUDAC" ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:631) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:631) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:743) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:743) Locate a functional Cxx compiler Checking for program /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx...found Defined make macro "CXX" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicxx" Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:781) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:781) Locate a functional Cxx preprocessor Checking for program /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx...found Defined make macro "CXXCPP" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -E" Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -E -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" # 1 "/home/semih/petsc//" # 1 "" # 1 "" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-DZOa4u/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-DZOa4u/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" 2 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 1 3 # 39 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 # 40 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 1 3 # 184 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 426 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 3 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/os_defines.h" 1 3 # 427 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 2 3 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/cpu_defines.h" 1 3 # 430 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/x86_64-pc-cygwin/bits/c++config.h" 2 3 # 42 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 2 3 # 72 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 10 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 11 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 15 "/usr/include/_ansi.h" 3 4 # 1 "/usr/include/newlib.h" 1 3 4 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 25 "/usr/include/sys/features.h" 3 4 extern "C" { # 227 "/usr/include/sys/features.h" 3 4 } # 6 "/usr/include/sys/config.h" 2 3 4 # 226 "/usr/include/sys/config.h" 3 4 # 1 "/usr/include/cygwin/config.h" 1 3 4 # 18 "/usr/include/cygwin/config.h" 3 4 extern "C" { # 100 "/usr/include/cygwin/config.h" 3 4 } # 227 "/usr/include/sys/config.h" 2 3 4 # 17 "/usr/include/_ansi.h" 2 3 4 # 12 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 212 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long unsigned int size_t; # 17 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/reent.h" 1 3 4 # 9 "/usr/include/sys/reent.h" 3 4 extern "C" { # 1 "/usr/include/_ansi.h" 1 3 4 # 14 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 147 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 15 "/usr/include/sys/reent.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 12 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 1 "/usr/include/machine/_default_types.h" 1 3 4 # 23 "/usr/include/machine/_default_types.h" 3 4 extern "C" { typedef signed char __int8_t; typedef unsigned char __uint8_t; # 41 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int16_t; typedef short unsigned int __uint16_t; # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; # 200 "/usr/include/machine/_default_types.h" 3 4 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 217 "/usr/include/machine/_default_types.h" 3 4 } # 8 "/usr/include/machine/_types.h" 2 3 4 # 13 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 14 "/usr/include/sys/lock.h" 3 4 typedef void *_LOCK_T; # 41 "/usr/include/sys/lock.h" 3 4 extern "C" { void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); } # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 55 "/usr/include/sys/_types.h" 3 4 typedef long signed int _ssize_t; # 67 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 353 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef unsigned int wint_t; # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 16 "/usr/include/sys/reent.h" 2 3 4 # 25 "/usr/include/sys/reent.h" 3 4 typedef unsigned int __ULong; # 38 "/usr/include/sys/reent.h" 3 4 struct _reent; struct _Bigint { struct _Bigint *_next; int _k, _maxwds, _sign, _wds; __ULong _x[1]; }; struct __tm { int __tm_sec; int __tm_min; int __tm_hour; int __tm_mday; int __tm_mon; int __tm_year; int __tm_wday; int __tm_yday; int __tm_isdst; }; struct _on_exit_args { void * _fnargs[32]; void * _dso_handle[32]; __ULong _fntypes; __ULong _is_cxa; }; # 91 "/usr/include/sys/reent.h" 3 4 struct _atexit { struct _atexit *_next; int _ind; void (*_fns[32])(void); struct _on_exit_args _on_exit_args; }; # 115 "/usr/include/sys/reent.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; # 179 "/usr/include/sys/reent.h" 3 4 struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; _off_t _offset; struct _reent *_data; _flock_t _lock; _mbstate_t _mbstate; int _flags2; }; # 237 "/usr/include/sys/reent.h" 3 4 struct __sFILE64 { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; struct _reent *_data; void * _cookie; _ssize_t (__attribute__((__cdecl__)) * _read) (struct _reent *, void *, char *, size_t) ; _ssize_t (__attribute__((__cdecl__)) * _write) (struct _reent *, void *, const char *, size_t) ; _fpos_t (__attribute__((__cdecl__)) * _seek) (struct _reent *, void *, _fpos_t, int); int (__attribute__((__cdecl__)) * _close) (struct _reent *, void *); struct __sbuf _ub; unsigned char *_up; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; int _flags2; _off64_t _offset; _fpos64_t (__attribute__((__cdecl__)) * _seek64) (struct _reent *, void *, _fpos64_t, int); _flock_t _lock; _mbstate_t _mbstate; }; typedef struct __sFILE64 __FILE; struct _glue { struct _glue *_next; int _niobs; __FILE *_iobs; }; # 317 "/usr/include/sys/reent.h" 3 4 struct _rand48 { unsigned short _seed[3]; unsigned short _mult[3]; unsigned short _add; }; # 569 "/usr/include/sys/reent.h" 3 4 struct _reent { int _errno; __FILE *_stdin, *_stdout, *_stderr; int _inc; char _emergency[25]; int _current_category; const char *_current_locale; int __sdidinit; void (__attribute__((__cdecl__)) * __cleanup) (struct _reent *); struct _Bigint *_result; int _result_k; struct _Bigint *_p5s; struct _Bigint **_freelist; int _cvtlen; char *_cvtbuf; union { struct { unsigned int _unused_rand; char * _strtok_last; char _asctime_buf[26]; struct __tm _localtime_buf; int _gamma_signgam; __extension__ unsigned long long _rand_next; struct _rand48 _r48; _mbstate_t _mblen_state; _mbstate_t _mbtowc_state; _mbstate_t _wctomb_state; char _l64a_buf[8]; char _signal_buf[24]; int _getdate_err; _mbstate_t _mbrlen_state; _mbstate_t _mbrtowc_state; _mbstate_t _mbsrtowcs_state; _mbstate_t _wcrtomb_state; _mbstate_t _wcsrtombs_state; int _h_errno; } _reent; struct { unsigned char * _nextf[30]; unsigned int _nmalloc[30]; } _unused; } _new; struct _atexit *_atexit; struct _atexit _atexit0; void (**(_sig_func))(int); struct _glue __sglue; __FILE __sf[3]; }; # 762 "/usr/include/sys/reent.h" 3 4 extern struct _reent *_impure_ptr ; extern struct _reent *const _global_impure_ptr ; void _reclaim_reent (struct _reent *); struct _reent * __attribute__((__cdecl__)) __getreent (void); # 788 "/usr/include/sys/reent.h" 3 4 } # 19 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/machine/stdlib.h" 1 3 4 # 14 "/usr/include/machine/stdlib.h" 3 4 extern "C" { char *mkdtemp (char *); } # 20 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 22 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/cygwin/stdlib.h" 1 3 4 # 14 "/usr/include/cygwin/stdlib.h" 3 4 # 1 "/usr/include/cygwin/wait.h" 1 3 4 # 15 "/usr/include/cygwin/stdlib.h" 2 3 4 extern "C" { __uint32_t arc4random(void); void arc4random_addrandom(unsigned char *, int); void arc4random_buf(void *, size_t); void arc4random_stir(void); __uint32_t arc4random_uniform(__uint32_t); const char *getprogname (void); void setprogname (const char *); char *canonicalize_file_name (const char *); int unsetenv (const char *); char *initstate (unsigned seed, char *state, size_t size); long random (void); char *setstate (const char *state); void srandom (unsigned); char *ptsname (int); int ptsname_r(int, char *, size_t); int getpt (void); int grantpt (int); int unlockpt (int); int posix_openpt (int); int posix_memalign (void **, size_t, size_t); extern void * memalign (size_t, size_t); extern void * valloc (size_t); # 89 "/usr/include/cygwin/stdlib.h" 3 4 } # 26 "/usr/include/stdlib.h" 2 3 4 extern "C" { typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long int quot; long long int rem; } lldiv_t; typedef int (*__compar_fn_t) (const void *, const void *); int __attribute__((__cdecl__)) __locale_mb_cur_max (void); void __attribute__((__cdecl__)) abort (void) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) abs (int); int __attribute__((__cdecl__)) atexit (void (*__func)(void)); double __attribute__((__cdecl__)) atof (const char *__nptr); float __attribute__((__cdecl__)) atoff (const char *__nptr); int __attribute__((__cdecl__)) atoi (const char *__nptr); int __attribute__((__cdecl__)) _atoi_r (struct _reent *, const char *__nptr); long __attribute__((__cdecl__)) atol (const char *__nptr); long __attribute__((__cdecl__)) _atol_r (struct _reent *, const char *__nptr); void * __attribute__((__cdecl__)) bsearch (const void * __key, const void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar) ; void * __attribute__((__cdecl__)) calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)); div_t __attribute__((__cdecl__)) div (int __numer, int __denom); void __attribute__((__cdecl__)) exit (int __status) __attribute__ ((__noreturn__)); void __attribute__((__cdecl__)) free (void *) __attribute__ ((__nothrow__)); char * __attribute__((__cdecl__)) getenv (const char *__string); char * __attribute__((__cdecl__)) _getenv_r (struct _reent *, const char *__string); char * __attribute__((__cdecl__)) _findenv (const char *, int *); char * __attribute__((__cdecl__)) _findenv_r (struct _reent *, const char *, int *); extern char *suboptarg; int __attribute__((__cdecl__)) getsubopt (char **, char * const *, char **); long __attribute__((__cdecl__)) labs (long); ldiv_t __attribute__((__cdecl__)) ldiv (long __numer, long __denom); void * __attribute__((__cdecl__)) malloc (size_t __size) __attribute__ ((__nothrow__)); int __attribute__((__cdecl__)) mblen (const char *, size_t); int __attribute__((__cdecl__)) _mblen_r (struct _reent *, const char *, size_t, _mbstate_t *); int __attribute__((__cdecl__)) mbtowc (wchar_t *__restrict, const char *__restrict, size_t); int __attribute__((__cdecl__)) _mbtowc_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); int __attribute__((__cdecl__)) wctomb (char *, wchar_t); int __attribute__((__cdecl__)) _wctomb_r (struct _reent *, char *, wchar_t, _mbstate_t *); size_t __attribute__((__cdecl__)) mbstowcs (wchar_t *__restrict, const char *__restrict, size_t); size_t __attribute__((__cdecl__)) _mbstowcs_r (struct _reent *, wchar_t *__restrict, const char *__restrict, size_t, _mbstate_t *); size_t __attribute__((__cdecl__)) wcstombs (char *__restrict, const wchar_t *__restrict, size_t); size_t __attribute__((__cdecl__)) _wcstombs_r (struct _reent *, char *__restrict, const wchar_t *__restrict, size_t, _mbstate_t *); char * __attribute__((__cdecl__)) mkdtemp (char *); int __attribute__((__cdecl__)) mkostemp (char *, int); int __attribute__((__cdecl__)) mkostemps (char *, int, int); int __attribute__((__cdecl__)) mkstemp (char *); int __attribute__((__cdecl__)) mkstemps (char *, int); char * __attribute__((__cdecl__)) mktemp (char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); char * __attribute__((__cdecl__)) _mkdtemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkostemp_r (struct _reent *, char *, int); int __attribute__((__cdecl__)) _mkostemps_r (struct _reent *, char *, int, int); int __attribute__((__cdecl__)) _mkstemp_r (struct _reent *, char *); int __attribute__((__cdecl__)) _mkstemps_r (struct _reent *, char *, int); char * __attribute__((__cdecl__)) _mktemp_r (struct _reent *, char *) __attribute__ ((__warning__ ("the use of `mktemp' is dangerous; use `mkstemp' instead"))); void __attribute__((__cdecl__)) qsort (void * __base, size_t __nmemb, size_t __size, __compar_fn_t _compar); int __attribute__((__cdecl__)) rand (void); void * __attribute__((__cdecl__)) realloc (void * __r, size_t __size) __attribute__ ((__nothrow__)); void * __attribute__((__cdecl__)) reallocf (void * __r, size_t __size); char * __attribute__((__cdecl__)) realpath (const char *__restrict path, char *__restrict resolved_path); void __attribute__((__cdecl__)) srand (unsigned __seed); double __attribute__((__cdecl__)) strtod (const char *__restrict __n, char **__restrict __end_PTR); double __attribute__((__cdecl__)) _strtod_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR); float __attribute__((__cdecl__)) strtof (const char *__restrict __n, char **__restrict __end_PTR); long __attribute__((__cdecl__)) strtol (const char *__restrict __n, char **__restrict __end_PTR, int __base); long __attribute__((__cdecl__)) _strtol_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) strtoul (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long __attribute__((__cdecl__)) _strtoul_r (struct _reent *,const char *__restrict __n, char **__restrict __end_PTR, int __base); int __attribute__((__cdecl__)) system (const char *__string); long __attribute__((__cdecl__)) a64l (const char *__input); char * __attribute__((__cdecl__)) l64a (long __input); char * __attribute__((__cdecl__)) _l64a_r (struct _reent *,long __input); int __attribute__((__cdecl__)) on_exit (void (*__func)(int, void *),void * __arg); void __attribute__((__cdecl__)) _Exit (int __status) __attribute__ ((__noreturn__)); int __attribute__((__cdecl__)) putenv (char *__string); int __attribute__((__cdecl__)) _putenv_r (struct _reent *, char *__string); void * __attribute__((__cdecl__)) _reallocf_r (struct _reent *, void *, size_t); int __attribute__((__cdecl__)) setenv (const char *__string, const char *__value, int __overwrite); int __attribute__((__cdecl__)) _setenv_r (struct _reent *, const char *__string, const char *__value, int __overwrite); char * __attribute__((__cdecl__)) gcvt (double,int,char *); char * __attribute__((__cdecl__)) gcvtf (float,int,char *); char * __attribute__((__cdecl__)) fcvt (double,int,int *,int *); char * __attribute__((__cdecl__)) fcvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) ecvt (double,int,int *,int *); char * __attribute__((__cdecl__)) ecvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) fcvtbuf (double, int, int*, int*, char *); char * __attribute__((__cdecl__)) ecvtf (float,int,int *,int *); char * __attribute__((__cdecl__)) dtoa (double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) rand_r (unsigned *__seed); double __attribute__((__cdecl__)) drand48 (void); double __attribute__((__cdecl__)) _drand48_r (struct _reent *); double __attribute__((__cdecl__)) erand48 (unsigned short [3]); double __attribute__((__cdecl__)) _erand48_r (struct _reent *, unsigned short [3]); long __attribute__((__cdecl__)) jrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _jrand48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) lcong48 (unsigned short [7]); void __attribute__((__cdecl__)) _lcong48_r (struct _reent *, unsigned short [7]); long __attribute__((__cdecl__)) lrand48 (void); long __attribute__((__cdecl__)) _lrand48_r (struct _reent *); long __attribute__((__cdecl__)) mrand48 (void); long __attribute__((__cdecl__)) _mrand48_r (struct _reent *); long __attribute__((__cdecl__)) nrand48 (unsigned short [3]); long __attribute__((__cdecl__)) _nrand48_r (struct _reent *, unsigned short [3]); unsigned short * __attribute__((__cdecl__)) seed48 (unsigned short [3]); unsigned short * __attribute__((__cdecl__)) _seed48_r (struct _reent *, unsigned short [3]); void __attribute__((__cdecl__)) srand48 (long); void __attribute__((__cdecl__)) _srand48_r (struct _reent *, long); long long __attribute__((__cdecl__)) atoll (const char *__nptr); long long __attribute__((__cdecl__)) _atoll_r (struct _reent *, const char *__nptr); long long __attribute__((__cdecl__)) llabs (long long); lldiv_t __attribute__((__cdecl__)) lldiv (long long __numer, long long __denom); long long __attribute__((__cdecl__)) strtoll (const char *__restrict __n, char **__restrict __end_PTR, int __base); long long __attribute__((__cdecl__)) _strtoll_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) strtoull (const char *__restrict __n, char **__restrict __end_PTR, int __base); unsigned long long __attribute__((__cdecl__)) _strtoull_r (struct _reent *, const char *__restrict __n, char **__restrict __end_PTR, int __base); # 221 "/usr/include/stdlib.h" 3 4 char * __attribute__((__cdecl__)) _dtoa_r (struct _reent *, double, int, int, int *, int*, char**); int __attribute__((__cdecl__)) _system_r (struct _reent *, const char *); void __attribute__((__cdecl__)) __eprintf (const char *, const char *, unsigned int, const char *); extern long double strtold (const char *__restrict, char **__restrict); } # 73 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 2 3 # 114 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/cstdlib" 3 namespace std { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 3 "/tmp/petsc-DZOa4u/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:898) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:898) Locate a functional Fortran compiler ================================================================================ TEST checkPIC from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:980) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:980) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Skip checking PIC options on user request ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1013) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1013) ================================================================================ TEST checkArchiver from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1112) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1112) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a /tmp/petsc-DZOa4u/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- c Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils) 2.24.51.20140703 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a /tmp/petsc-DZOa4u/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-DZOa4u/config.setCompilers/libconf1.a Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/tmp/petsc-DZOa4u/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1223) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1223) Check that the linker can produce shared libraries Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.setCompilers/libconftest.a /tmp/petsc-DZOa4u/config.setCompilers/conftest.o ; /usr/bin/ranlib /tmp/petsc-DZOa4u/config.setCompilers/libconftest.a Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/tmp/petsc-DZOa4u/config.setCompilers -lconftest Using shared linker /usr/bin/ar with flags [] and library extension a Executing: uname -s stdout: CYGWIN_NT-6.1 ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1301) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1301) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: CYGWIN_NT-6.1 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -Wl,-rpath,/home/semih/petsc /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/semih/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: CYGWIN_NT-6.1 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe -Wl,-rpath,/home/semih/petsc /tmp/petsc-DZOa4u/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/semih/petsc Popping language Cxx ================================================================================ TEST checkLibC from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1336) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1336) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1385) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1385) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define STDC_HEADERS 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 12 "/usr/include/dlfcn.h" 3 4 #define _DLFCN_H extern void *dlopen (const char *, int); extern void *dlsym (void *, const char *); extern int dlclose (void *); extern char *dlerror (void); #define FORK_RELOAD 1 #define FORK_NO_RELOAD 0 extern void dlfork (int); #define RTLD_DEFAULT NULL #define RTLD_LOCAL 0 #define RTLD_LAZY 1 #define RTLD_NOW 2 #define RTLD_GLOBAL 4 #define RTLD_NODELETE 8 #define RTLD_NOLOAD 16 #define RTLD_DEEPBIND 32 # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe /tmp/petsc-DZOa4u/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: CYGWIN_NT-6.1 Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Executing: /usr/bin/ar -o /tmp/petsc-DZOa4u/config.setCompilers/libconftest.so /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /usr/bin/ar: creating /tmp/petsc-DZOa4u/config.setCompilers/libconftest.so Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:11:3: warning: implicit declaration of function ‘printf’ [-Wimplicit-function-declaration] printf("Could not load symbol\n"); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Invalid return from foo()\n"); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ [enabled by default] printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-DZOa4u/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/bin/ar with flags [] and library extension so ================================================================================ TEST output from config.setCompilers(/home/semih/petsc/config/BuildSystem/config/setCompilers.py:1431) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1431) Output module data as defines and substitutions Substituting "CC" with "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/home/semih/petsc/arch-mswin-c-debug/bin/mpicxx" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ float * restrict x;; ^ /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:18: error: ‘x’ undeclared (first use in this function) /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.compilers/conftest.c:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Defined "C_RESTRICT" to " __restrict__" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Defined "C_STATIC_INLINE" to "static inline" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -v /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl stdout: mpicc for MPICH version 3.1 Possible ERROR while running linker: stdout: mpicc for MPICH version 3.1stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.8.3 (GCC) COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g3' '-O0' '-o' '/tmp/petsc-DZOa4u/config.compilers/conftest.exe' '-v' '-I' '/home/semih/petsc/arch-mswin-c-debug/include' '-L/home/semih/petsc/arch-mswin-c-debug/lib' '-L/home/semih/petsc/arch-mswin-c-debug/lib' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe --build-id -m i386pep --wrap _Znwm --wrap _Znam --wrap _ZdlPv --wrap _ZdaPv --wrap _ZnwmRKSt9nothrow_t --wrap _ZnamRKSt9nothrow_t --wrap _ZdlPvRKSt9nothrow_t --wrap _ZdaPvRKSt9nothrow_t -Bdynamic --dll-search-prefix=cyg --tsaware -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../.. /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -lgcc -lcygwin -ladvapi32 -lshell32 -luser32 -lkernel32 -lgcc_s -lgcc /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o Pushing language C Trying C compiler flag -MMD -MP Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -MMD -MP /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -MMD -MP /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.compilers/conftest.cc:5:18: error: expected initializer before ‘x’ float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.compilers/conftest.cc:5:23: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } Defined "CXX_RESTRICT" to " __restrict__" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Defined "HAVE_CXX_NAMESPACE" to "1" Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } Defined "CXX_STATIC_INLINE" to "static inline" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.compilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe -v /tmp/petsc-DZOa4u/config.compilers/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl stdout: mpicxx for MPICH version 3.1 Possible ERROR while running linker: stdout: mpicxx for MPICH version 3.1stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.8.3-3.x86_64/src/gcc-4.8.3 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.8.3 (GCC) COMPILER_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/:/lib/../lib/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/:/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-g' '-O0' '-o' '/tmp/petsc-DZOa4u/config.compilers/conftest.exe' '-v' '-L/home/semih/petsc/arch-mswin-c-debug/lib' '-L/home/semih/petsc/arch-mswin-c-debug/lib' '-L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3' '-L/usr/x86_64-pc-cygwin/lib' '-L/usr/x86_64-pc-cygwin/lib' '-I' '/home/semih/petsc/arch-mswin-c-debug/include' '-L/home/semih/petsc/arch-mswin-c-debug/lib' '-L/home/semih/petsc/arch-mswin-c-debug/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/collect2.exe --build-id -m i386pep --wrap _Znwm --wrap _Znam --wrap _ZdlPv --wrap _ZdaPv --wrap _ZnwmRKSt9nothrow_t --wrap _ZnamRKSt9nothrow_t --wrap _ZdlPvRKSt9nothrow_t --wrap _ZdaPvRKSt9nothrow_t -Bdynamic --dll-search-prefix=cyg --tsaware -o /tmp/petsc-DZOa4u/config.compilers/conftest.exe /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/crt0.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtbegin.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../.. /tmp/petsc-DZOa4u/config.compilers/conftest.o -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl -lmpichcxx -lpmpich -lmpich -lopa -lmpl -lpthread -lstdc++ -lgcc_s -lgcc -lcygwin -ladvapi32 -lshell32 -luser32 -lkernel32 -lgcc_s -lgcc /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../lib/default-manifest.o /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/crtend.o Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -lmpichcxx -lstdc++ -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -lmpichcxx -lstdc++ -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Executing: /tmp/petsc-DZOa4u/config.setCompilers/conftest.exe Popping language C Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/random:35:0, from /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/random:35:0, from /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:4: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/c++/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:11: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: error: ‘constexpr’ does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:5:32: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:11: error: ‘random_device’ is not a member of ‘std’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:10:30: error: expected ‘;’ before ‘rd’ std::random_device rd; ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:11: error: ‘mt19937’ is not a member of ‘std’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:11:24: error: expected ‘;’ before ‘mt’ std::mt19937 mt(rd()); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:11: error: ‘normal_distribution’ is not a member of ‘std’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before ‘double’ std::normal_distribution dist(0,1); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:12:36: error: expected ‘;’ before ‘double’ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:33: error: ‘mt’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:35: error: ‘dist’ was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/semih/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc --version stdout: gcc (GCC) 4.8.3 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc gcc (GCC) 4.8.3 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -show stdout: gcc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICC_SHOW" to "gcc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread" Trying C compiler flag -Wall Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -show stdout: gcc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICC_SHOW" to "gcc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread" Trying C compiler flag -g3 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g3 Trying C compiler flag -O0 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O0 Popping language C Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx --version stdout: g++ (GCC) 4.8.3 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx g++ (GCC) 4.8.3 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -show stdout: g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -lmpichcxx -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICXX_SHOW" to "g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -lmpichcxx -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread" Trying Cxx compiler flag -Wall Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -show stdout: g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -lmpichcxx -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread Defined make macro "MPICXX_SHOW" to "g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -lmpichcxx -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread" Trying Cxx compiler flag -g Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Trying Cxx compiler flag -O0 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O0 Popping language Cxx Checking for library in Download MPI: [] Contents: ['bin', 'conf', 'doc', 'externalpackages', 'include', 'lib', 'man', 'obj', 'share'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Checking for headers Download MPI: ['/home/semih/petsc/arch-mswin-c-debug/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/home/semih/petsc/arch-mswin-c-debug/include'] Checking include with compiler flags var CPPFLAGS ['/home/semih/petsc/arch-mswin-c-debug/include'] Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define STDC_HEADERS 1 #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" 1 #define MPI_INCLUDED # 17 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPICH_ATTR_WEAK_ALIAS(fname) #undef MPICH_DEFINE_ATTR_TYPE_TYPES # 34 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPICH_ATTR_POINTER_WITH_TYPE_TAG(buffer_idx,type_idx) #define MPICH_ATTR_TYPE_TAG(type) #define MPICH_ATTR_TYPE_TAG_LAYOUT_COMPATIBLE(type) #define MPICH_ATTR_TYPE_TAG_MUST_BE_NULL() # 62 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPICH_ATTR_TYPE_TAG_STDINT(type) # 72 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPICH_ATTR_TYPE_TAG_C99(type) #define MPICH_ATTR_TYPE_TAG_CXX(type) #define MPI_COMM_NULL ((MPI_Comm)0x04000000) #define MPI_OP_NULL ((MPI_Op)0x18000000) #define MPI_GROUP_NULL ((MPI_Group)0x08000000) #define MPI_DATATYPE_NULL ((MPI_Datatype)0x0c000000) #define MPI_REQUEST_NULL ((MPI_Request)0x2c000000) #define MPI_ERRHANDLER_NULL ((MPI_Errhandler)0x14000000) #define MPI_MESSAGE_NULL ((MPI_Message)MPI_REQUEST_NULL) #define MPI_MESSAGE_NO_PROC ((MPI_Message)0x6c000000) #define MPI_IDENT 0 #define MPI_CONGRUENT 1 #define MPI_SIMILAR 2 #define MPI_UNEQUAL 3 typedef int MPI_Datatype; #define MPI_CHAR ((MPI_Datatype)0x4c000101) #define MPI_SIGNED_CHAR ((MPI_Datatype)0x4c000118) #define MPI_UNSIGNED_CHAR ((MPI_Datatype)0x4c000102) #define MPI_BYTE ((MPI_Datatype)0x4c00010d) #define MPI_WCHAR ((MPI_Datatype)0x4c00020e) #define MPI_SHORT ((MPI_Datatype)0x4c000203) #define MPI_UNSIGNED_SHORT ((MPI_Datatype)0x4c000204) #define MPI_INT ((MPI_Datatype)0x4c000405) #define MPI_UNSIGNED ((MPI_Datatype)0x4c000406) #define MPI_LONG ((MPI_Datatype)0x4c000807) #define MPI_UNSIGNED_LONG ((MPI_Datatype)0x4c000808) #define MPI_FLOAT ((MPI_Datatype)0x4c00040a) #define MPI_DOUBLE ((MPI_Datatype)0x4c00080b) #define MPI_LONG_DOUBLE ((MPI_Datatype)0x4c00100c) #define MPI_LONG_LONG_INT ((MPI_Datatype)0x4c000809) #define MPI_UNSIGNED_LONG_LONG ((MPI_Datatype)0x4c000819) #define MPI_LONG_LONG MPI_LONG_LONG_INT # 138 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_PACKED ((MPI_Datatype)0x4c00010f) #define MPI_LB ((MPI_Datatype)0x4c000010) #define MPI_UB ((MPI_Datatype)0x4c000011) # 150 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_FLOAT_INT ((MPI_Datatype)0x8c000000) #define MPI_DOUBLE_INT ((MPI_Datatype)0x8c000001) #define MPI_LONG_INT ((MPI_Datatype)0x8c000002) #define MPI_SHORT_INT ((MPI_Datatype)0x8c000003) #define MPI_2INT ((MPI_Datatype)0x4c000816) #define MPI_LONG_DOUBLE_INT ((MPI_Datatype)0x8c000004) # 192 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_COMPLEX ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_DOUBLE_COMPLEX ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_LOGICAL ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_REAL ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_DOUBLE_PRECISION ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_INTEGER ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_2INTEGER ((MPI_Datatype)MPI_DATATYPE_NULL) # 210 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_2REAL ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_2DOUBLE_PRECISION ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_CHARACTER ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_REAL4 ((MPI_Datatype)0x4c000427) #define MPI_REAL8 ((MPI_Datatype)0x4c000829) #define MPI_REAL16 ((MPI_Datatype)0x4c00102b) #define MPI_COMPLEX8 ((MPI_Datatype)0x4c000828) #define MPI_COMPLEX16 ((MPI_Datatype)0x4c00102a) #define MPI_COMPLEX32 ((MPI_Datatype)0x4c00202c) #define MPI_INTEGER1 ((MPI_Datatype)0x4c00012d) #define MPI_INTEGER2 ((MPI_Datatype)0x4c00022f) #define MPI_INTEGER4 ((MPI_Datatype)0x4c000430) #define MPI_INTEGER8 ((MPI_Datatype)0x4c000831) #define MPI_INTEGER16 ((MPI_Datatype)MPI_DATATYPE_NULL) #define MPI_INT8_T ((MPI_Datatype)0x4c000137) #define MPI_INT16_T ((MPI_Datatype)0x4c000238) #define MPI_INT32_T ((MPI_Datatype)0x4c000439) #define MPI_INT64_T ((MPI_Datatype)0x4c00083a) #define MPI_UINT8_T ((MPI_Datatype)0x4c00013b) #define MPI_UINT16_T ((MPI_Datatype)0x4c00023c) #define MPI_UINT32_T ((MPI_Datatype)0x4c00043d) #define MPI_UINT64_T ((MPI_Datatype)0x4c00083e) # 249 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_C_BOOL ((MPI_Datatype)0x4c00013f) #define MPI_C_FLOAT_COMPLEX ((MPI_Datatype)0x4c000840) #define MPI_C_COMPLEX MPI_C_FLOAT_COMPLEX #define MPI_C_DOUBLE_COMPLEX ((MPI_Datatype)0x4c001041) #define MPI_C_LONG_DOUBLE_COMPLEX ((MPI_Datatype)0x4c002042) # 265 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_AINT ((MPI_Datatype)0x4c000843) #define MPI_OFFSET ((MPI_Datatype)0x4c000844) #define MPI_COUNT ((MPI_Datatype)0x4c000845) #define MPI_CXX_BOOL ((MPI_Datatype)0x4c000133) #define MPI_CXX_FLOAT_COMPLEX ((MPI_Datatype)0x4c000834) #define MPI_CXX_DOUBLE_COMPLEX ((MPI_Datatype)0x4c001035) #define MPI_CXX_LONG_DOUBLE_COMPLEX ((MPI_Datatype)0x4c002036) #define MPI_TYPECLASS_REAL 1 #define MPI_TYPECLASS_INTEGER 2 #define MPI_TYPECLASS_COMPLEX 3 typedef int MPI_Comm; #define MPI_COMM_WORLD ((MPI_Comm)0x44000000) #define MPI_COMM_SELF ((MPI_Comm)0x44000001) typedef int MPI_Group; #define MPI_GROUP_EMPTY ((MPI_Group)0x48000000) typedef int MPI_Win; #define MPI_WIN_NULL ((MPI_Win)0x20000000) #define MPI_FILE_DEFINED typedef struct ADIOI_FileD *MPI_File; #define MPI_FILE_NULL ((MPI_File)0) typedef int MPI_Op; #define MPI_MAX (MPI_Op)(0x58000001) #define MPI_MIN (MPI_Op)(0x58000002) #define MPI_SUM (MPI_Op)(0x58000003) #define MPI_PROD (MPI_Op)(0x58000004) #define MPI_LAND (MPI_Op)(0x58000005) #define MPI_BAND (MPI_Op)(0x58000006) #define MPI_LOR (MPI_Op)(0x58000007) #define MPI_BOR (MPI_Op)(0x58000008) #define MPI_LXOR (MPI_Op)(0x58000009) #define MPI_BXOR (MPI_Op)(0x5800000a) #define MPI_MINLOC (MPI_Op)(0x5800000b) #define MPI_MAXLOC (MPI_Op)(0x5800000c) #define MPI_REPLACE (MPI_Op)(0x5800000d) #define MPI_NO_OP (MPI_Op)(0x5800000e) # 332 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_TAG_UB 0x64400001 #define MPI_HOST 0x64400003 #define MPI_IO 0x64400005 #define MPI_WTIME_IS_GLOBAL 0x64400007 #define MPI_UNIVERSE_SIZE 0x64400009 #define MPI_LASTUSEDCODE 0x6440000b #define MPI_APPNUM 0x6440000d #define MPI_WIN_BASE 0x66000001 #define MPI_WIN_SIZE 0x66000003 #define MPI_WIN_DISP_UNIT 0x66000005 #define MPI_WIN_CREATE_FLAVOR 0x66000007 #define MPI_WIN_MODEL 0x66000009 #define MPI_MAX_PROCESSOR_NAME 128 #define MPI_MAX_LIBRARY_VERSION_STRING 8192 #define MPI_MAX_ERROR_STRING 512 #define MPI_MAX_PORT_NAME 256 #define MPI_MAX_OBJECT_NAME 128 #define MPI_UNDEFINED (-32766) #define MPI_KEYVAL_INVALID 0x24000000 typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; #define MPI_BSEND_OVERHEAD 96 typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; #define MPI_BOTTOM (void *)0 extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; #define MPI_PROC_NULL (-1) #define MPI_ANY_SOURCE (-2) #define MPI_ROOT (-3) #define MPI_ANY_TAG (-1) #define MPI_LOCK_EXCLUSIVE 234 #define MPI_LOCK_SHARED 235 typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; #define MPI_ERRORS_ARE_FATAL ((MPI_Errhandler)0x54000000) #define MPI_ERRORS_RETURN ((MPI_Errhandler)0x54000001) #define MPIR_ERRORS_THROW_EXCEPTIONS ((MPI_Errhandler)0x54000002) typedef int MPI_Errhandler; #define MPI_NULL_COPY_FN ((MPI_Copy_function *)0) #define MPI_NULL_DELETE_FN ((MPI_Delete_function *)0) #define MPI_DUP_FN MPIR_Dup_fn #define MPI_COMM_NULL_COPY_FN ((MPI_Comm_copy_attr_function*)0) #define MPI_COMM_NULL_DELETE_FN ((MPI_Comm_delete_attr_function*)0) #define MPI_COMM_DUP_FN ((MPI_Comm_copy_attr_function *)MPI_DUP_FN) #define MPI_WIN_NULL_COPY_FN ((MPI_Win_copy_attr_function*)0) #define MPI_WIN_NULL_DELETE_FN ((MPI_Win_delete_attr_function*)0) #define MPI_WIN_DUP_FN ((MPI_Win_copy_attr_function*)MPI_DUP_FN) #define MPI_TYPE_NULL_COPY_FN ((MPI_Type_copy_attr_function*)0) #define MPI_TYPE_NULL_DELETE_FN ((MPI_Type_delete_attr_function*)0) #define MPI_TYPE_DUP_FN ((MPI_Type_copy_attr_function*)MPI_DUP_FN) typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); #define MPI_VERSION 3 #define MPI_SUBVERSION 0 #define MPICH_NAME 3 #define MPICH 1 #define MPICH_HAS_C2F 1 # 487 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPICH_VERSION "3.1" #define MPICH_NUMVERSION 30100300 #define MPICH_RELEASE_TYPE_ALPHA 0 #define MPICH_RELEASE_TYPE_BETA 1 #define MPICH_RELEASE_TYPE_RC 2 #define MPICH_RELEASE_TYPE_PATCH 3 #define MPICH_CALC_VERSION(MAJOR,MINOR,REVISION,TYPE,PATCH) (((MAJOR) * 10000000) + ((MINOR) * 100000) + ((REVISION) * 1000) + ((TYPE) * 100) + (PATCH)) enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; #define MPI_INFO_NULL ((MPI_Info)0x1c000000) #define MPI_INFO_ENV ((MPI_Info)0x5c000001) #define MPI_MAX_INFO_KEY 255 #define MPI_MAX_INFO_VAL 1024 #define MPI_ORDER_C 56 #define MPI_ORDER_FORTRAN 57 #define MPI_DISTRIBUTE_BLOCK 121 #define MPI_DISTRIBUTE_CYCLIC 122 #define MPI_DISTRIBUTE_NONE 123 #define MPI_DISTRIBUTE_DFLT_DARG -49767 #define MPI_IN_PLACE (void *) -1 #define MPI_MODE_NOCHECK 1024 #define MPI_MODE_NOSTORE 2048 #define MPI_MODE_NOPUT 4096 #define MPI_MODE_NOPRECEDE 8192 #define MPI_MODE_NOSUCCEED 16384 #define MPI_COMM_TYPE_SHARED 1 typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; # 560 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" #define MPI_AINT_FMT_DEC_SPEC "%ld" #define MPI_AINT_FMT_HEX_SPEC "%lx" #define HAVE_MPI_OFFSET typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; #define MPI_T_ENUM_NULL ((MPI_T_enum)NULL) #define MPI_T_CVAR_HANDLE_NULL ((MPI_T_cvar_handle)NULL) #define MPI_T_PVAR_HANDLE_NULL ((MPI_T_pvar_handle)NULL) #define MPI_T_PVAR_SESSION_NULL ((MPI_T_pvar_session)NULL) typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; #define MPI_Comm_c2f(comm) (MPI_Fint)(comm) #define MPI_Comm_f2c(comm) (MPI_Comm)(comm) #define MPI_Type_c2f(datatype) (MPI_Fint)(datatype) #define MPI_Type_f2c(datatype) (MPI_Datatype)(datatype) #define MPI_Group_c2f(group) (MPI_Fint)(group) #define MPI_Group_f2c(group) (MPI_Group)(group) #define MPI_Info_c2f(info) (MPI_Fint)(info) #define MPI_Info_f2c(info) (MPI_Info)(info) #define MPI_Request_f2c(request) (MPI_Request)(request) #define MPI_Request_c2f(request) (MPI_Fint)(request) #define MPI_Op_c2f(op) (MPI_Fint)(op) #define MPI_Op_f2c(op) (MPI_Op)(op) #define MPI_Errhandler_c2f(errhandler) (MPI_Fint)(errhandler) #define MPI_Errhandler_f2c(errhandler) (MPI_Errhandler)(errhandler) #define MPI_Win_c2f(win) (MPI_Fint)(win) #define MPI_Win_f2c(win) (MPI_Win)(win) #define MPI_Message_c2f(msg) ((MPI_Fint)(msg)) #define MPI_Message_f2c(msg) ((MPI_Message)(msg)) #define PMPI_Comm_c2f(comm) (MPI_Fint)(comm) #define PMPI_Comm_f2c(comm) (MPI_Comm)(comm) #define PMPI_Type_c2f(datatype) (MPI_Fint)(datatype) #define PMPI_Type_f2c(datatype) (MPI_Datatype)(datatype) #define PMPI_Group_c2f(group) (MPI_Fint)(group) #define PMPI_Group_f2c(group) (MPI_Group)(group) #define PMPI_Info_c2f(info) (MPI_Fint)(info) #define PMPI_Info_f2c(info) (MPI_Info)(info) #define PMPI_Request_f2c(request) (MPI_Request)(request) #define PMPI_Request_c2f(request) (MPI_Fint)(request) #define PMPI_Op_c2f(op) (MPI_Fint)(op) #define PMPI_Op_f2c(op) (MPI_Op)(op) #define PMPI_Errhandler_c2f(errhandler) (MPI_Fint)(errhandler) #define PMPI_Errhandler_f2c(errhandler) (MPI_Errhandler)(errhandler) #define PMPI_Win_c2f(win) (MPI_Fint)(win) #define PMPI_Win_f2c(win) (MPI_Win)(win) #define PMPI_Message_c2f(msg) ((MPI_Fint)(msg)) #define PMPI_Message_f2c(msg) ((MPI_Message)(msg)) #define MPI_STATUS_IGNORE (MPI_Status *)1 #define MPI_STATUSES_IGNORE (MPI_Status *)1 #define MPI_ERRCODES_IGNORE (int *)0 #define MPIU_DLL_SPEC extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; #define MPI_ARGV_NULL (char **)0 #define MPI_ARGVS_NULL (char ***)0 #define MPI_THREAD_SINGLE 0 #define MPI_THREAD_FUNNELED 1 #define MPI_THREAD_SERIALIZED 2 #define MPI_THREAD_MULTIPLE 3 typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); #define MPI_SUCCESS 0 #define MPI_ERR_BUFFER 1 #define MPI_ERR_COUNT 2 #define MPI_ERR_TYPE 3 #define MPI_ERR_TAG 4 #define MPI_ERR_COMM 5 #define MPI_ERR_RANK 6 #define MPI_ERR_ROOT 7 #define MPI_ERR_TRUNCATE 14 #define MPI_ERR_GROUP 8 #define MPI_ERR_OP 9 #define MPI_ERR_REQUEST 19 #define MPI_ERR_TOPOLOGY 10 #define MPI_ERR_DIMS 11 #define MPI_ERR_ARG 12 #define MPI_ERR_OTHER 15 #define MPI_ERR_UNKNOWN 13 #define MPI_ERR_INTERN 16 #define MPI_ERR_IN_STATUS 17 #define MPI_ERR_PENDING 18 #define MPI_ERR_FILE 27 #define MPI_ERR_ACCESS 20 #define MPI_ERR_AMODE 21 #define MPI_ERR_BAD_FILE 22 #define MPI_ERR_FILE_EXISTS 25 #define MPI_ERR_FILE_IN_USE 26 #define MPI_ERR_NO_SPACE 36 #define MPI_ERR_NO_SUCH_FILE 37 #define MPI_ERR_IO 32 #define MPI_ERR_READ_ONLY 40 #define MPI_ERR_CONVERSION 23 #define MPI_ERR_DUP_DATAREP 24 #define MPI_ERR_UNSUPPORTED_DATAREP 43 #define MPI_ERR_INFO 28 #define MPI_ERR_INFO_KEY 29 #define MPI_ERR_INFO_VALUE 30 #define MPI_ERR_INFO_NOKEY 31 #define MPI_ERR_NAME 33 #define MPI_ERR_NO_MEM 34 #define MPI_ERR_NOT_SAME 35 #define MPI_ERR_PORT 38 #define MPI_ERR_QUOTA 39 #define MPI_ERR_SERVICE 41 #define MPI_ERR_SPAWN 42 #define MPI_ERR_UNSUPPORTED_OPERATION 44 #define MPI_ERR_WIN 45 #define MPI_ERR_BASE 46 #define MPI_ERR_LOCKTYPE 47 #define MPI_ERR_KEYVAL 48 #define MPI_ERR_RMA_CONFLICT 49 #define MPI_ERR_RMA_SYNC 50 #define MPI_ERR_SIZE 51 #define MPI_ERR_DISP 52 #define MPI_ERR_ASSERT 53 #define MPIX_ERR_PROC_FAIL_STOP 54 #define MPI_ERR_RMA_RANGE 55 #define MPI_ERR_RMA_ATTACH 56 #define MPI_ERR_RMA_SHARED 57 #define MPI_ERR_RMA_FLAVOR 58 #define MPI_T_ERR_MEMORY 59 #define MPI_T_ERR_NOT_INITIALIZED 60 #define MPI_T_ERR_CANNOT_INIT 61 #define MPI_T_ERR_INVALID_INDEX 62 #define MPI_T_ERR_INVALID_ITEM 63 #define MPI_T_ERR_INVALID_HANDLE 64 #define MPI_T_ERR_OUT_OF_HANDLES 65 #define MPI_T_ERR_OUT_OF_SESSIONS 66 #define MPI_T_ERR_INVALID_SESSION 67 #define MPI_T_ERR_CVAR_SET_NOT_NOW 68 #define MPI_T_ERR_CVAR_SET_NEVER 69 #define MPI_T_ERR_PVAR_NO_STARTSTOP 70 #define MPI_T_ERR_PVAR_NO_WRITE 71 #define MPI_T_ERR_PVAR_NO_ATOMIC 72 #define MPI_ERR_LASTCODE 0x3fffffff #define MPICH_ERR_LAST_CLASS 72 typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); #define MPI_CONVERSION_FN_NULL ((MPI_Datarep_conversion_function *)0) # 880 "/home/semih/petsc/arch-mswin-c-debug/include/mpi.h" int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count) ; int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size) ; int MPI_Buffer_detach(void *buffer_addr, int *size) ; int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status) ; int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status) ; int MPI_Request_free(MPI_Request *request) ; int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status) ; int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status) ; int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]) ; int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]) ; int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]) ; int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]) ; int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status) ; int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Cancel(MPI_Request *request) ; int MPI_Test_cancelled(const MPI_Status *status, int *flag) ; int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request) ; int MPI_Startall(int count, MPI_Request array_of_requests[]) ; int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype) ; int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype) ; int MPI_Address(const void *location, MPI_Aint *address) ; int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent) ; int MPI_Type_size(MPI_Datatype datatype, int *size) ; int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement) ; int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement) ; int MPI_Type_commit(MPI_Datatype *datatype) ; int MPI_Type_free(MPI_Datatype *datatype) ; int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count) ; int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size) ; int MPI_Barrier(MPI_Comm comm) ; int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm) ; int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op) ; int MPI_Op_free(MPI_Op *op) ; int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size) ; int MPI_Group_rank(MPI_Group group, int *rank) ; int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]) ; int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result) ; int MPI_Comm_group(MPI_Comm comm, MPI_Group *group) ; int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup) ; int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup) ; int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup) ; int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup) ; int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup) ; int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup) ; Found header files ['mpi.h'] in ['/home/semih/petsc/arch-mswin-c-debug/include'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:6:10: warning: unused variable ‘a’ [-Wunused-variable] MPI_Fint a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:182) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:182) Check for functions added to the interface in MPI-2 Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.types/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Executing: /tmp/petsc-DZOa4u/config.types/conftest.exe Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe Executing: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe Executing: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe Executing: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:320) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:320) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:633) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:633) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `MPI_SGI_barrier' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `MPI_SGI_barrier' collect2: error: ld returned 1 exit status Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:643) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:643) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.cc: In function ‘void _check_MPI_Finalize()’: /tmp/petsc-DZOa4u/config.libraries/conftest.cc:5:41: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:661) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:661) Make sure fortran include [mpif.h] and library symbols are found ================================================================================ TEST configureIO from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:686) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:686) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:23: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:23: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:22: warning: ‘buf’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:22: warning: ‘fh’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:22: warning: ‘disp’ is used uninitialized in this function [-Wuninitialized] /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:9:22: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:8:18: warning: ‘info’ is used uninitialized in this function [-Wuninitialized] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:7:10: warning: unused variable ‘info’ [-Wunused-variable] MPI_Info info; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:723) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:723) Find MPI include paths from "mpicc -show" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -show stdout: gcc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread compilers: Checking arg gcc compilers: Checking arg -Wall compilers: Checking arg -Wwrite-strings compilers: Checking arg -Wno-strict-aliasing compilers: Checking arg -Wno-unknown-pragmas compilers: Checking arg -g3 compilers: Checking arg -O0 compilers: Checking arg -I/home/semih/petsc/arch-mswin-c-debug/include compilers: Found include directory: /home/semih/petsc/arch-mswin-c-debug/include compilers: Checking arg -L/home/semih/petsc/arch-mswin-c-debug/lib compilers: Checking arg -L/home/semih/petsc/arch-mswin-c-debug/lib compilers: Checking arg -lpmpich compilers: Checking arg -lmpich compilers: Checking arg -lopa compilers: Checking arg -lmpl compilers: Checking arg -lpthread Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_MPIX_Iallreduce': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `MPIX_Iallreduce' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `MPIX_Iallreduce' collect2: error: ld returned 1 exit status Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c:6:5: warning: unused variable ‘combiner’ [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Defined "HAVE_MPICH_CH3_SOCK" to "1" Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Defined "HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:132) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:132) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/home/semih/petsc/config/BuildSystem/config/packages/MPI.py:145) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:145) Checking for mpiexec Pushing language C Popping language C Checking for program /home/semih/petsc/arch-mswin-c-debug/bin/mpiexec...found Defined make macro "MPIEXEC" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpiexec" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.packages.MPI/libconftest.a /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o ; /usr/bin/ranlib /tmp/petsc-DZOa4u/config.packages.MPI/libconftest.a Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -I/home/semih/petsc/arch-mswin-c-debug/include /tmp/petsc-DZOa4u/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /usr/bin/ar cr /tmp/petsc-DZOa4u/config.packages.MPI/libconftest.a /tmp/petsc-DZOa4u/config.packages.MPI/conftest.o ; /usr/bin/ranlib /tmp/petsc-DZOa4u/config.packages.MPI/libconftest.a Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/tmp/petsc-DZOa4u/config.libraries/lib1.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/tmp/petsc-DZOa4u/config.libraries/lib2.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpiexec /tmp/petsc-DZOa4u/config.libraries/conftest.exe Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpiexec /tmp/petsc-DZOa4u/config.libraries/conftest.exe stdout: =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 5576 RUNNING AT semih-PC = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== ERROR while running executable: Could not execute "/home/semih/petsc/arch-mswin-c-debug/bin/mpiexec /tmp/petsc-DZOa4u/config.libraries/conftest.exe": =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 5576 RUNNING AT semih-PC = EXIT CODE: 1 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES ===================================================================================Could not open lib1.so: Permission denied Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.hdf5(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.exodusii(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.thrust(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.thrust(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/home/semih/petsc/config/PETSc/utilities/scalarTypes.py:38) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:38) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_ISNORMAL" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_ISNAN" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_ISINF" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_isnan’ [-Wimplicit-function-declaration] double b = 2.0;int a = _isnan(b); ^ /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_isnan' /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:(.text+0x29): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_isnan' collect2: error: ld returned 1 exit status Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:1: warning: implicit declaration of function ‘_finite’ [-Wimplicit-function-declaration] double b = 2.0;int a = _finite(b); ^ /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _finite(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.o: In function `main': /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6: undefined reference to `_finite' /tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes/conftest.c:6:(.text+0x29): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `_finite' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/home/semih/petsc/config/PETSc/utilities/scalarTypes.py:78) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:78) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Precision is double ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/semih/petsc/config/PETSc/utilities/libraryOptions.py:48) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:48) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `bgl_perfctr_void' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/semih/petsc/config/PETSc/utilities/libraryOptions.py:97) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:97) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.yaml(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.yaml(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.valgrind(/home/semih/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.valgrind(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers -I/usr/local/include /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include'] Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers -I/usr/local/include /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2stderr: /tmp/petsc-DZOa4u/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Popping language C Directory does not exist: /opt/local (while checking "Package specific search directory VALGRIND" for "[]") Directory does not exist: /opt/local (while checking "Package specific search directory VALGRIND" for "[]") Executing: uname -s stdout: CYGWIN_NT-6.1 Executing: uname -s stdout: CYGWIN_NT-6.1 Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.threadcomm(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.threadcomm(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.tetgen(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.tetgen(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.ssl(/home/semih/petsc/config/PETSc/packages/ssl.py:30) TESTING: configureLibrary from PETSc.packages.ssl(config/PETSc/packages/ssl.py:30) ================================================================================== Checking for a functional ssl Checking for library in Package specific search directory SSL: ['libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lssl -lcrypto -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lssl /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lcrypto collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory SSL: ['lib64/libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['lib64/libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lssl -lcrypto -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lssl /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lcrypto collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkSharedLibrary from PETSc.packages.ssl(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.ssl(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sprng(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.sprng(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing or if it is needed Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/bfort...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/bfort...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/bfort...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/bfort...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/bfort...not found Checking for program /cygdrive/c/MSMPI/Bin/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/bfort...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/bfort...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/bfort...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/bfort...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/bfort...not found Checking for program /cygdrive/c/Windows/system32/bfort...not found Checking for program /cygdrive/c/Windows/bfort...not found Checking for program /cygdrive/c/Windows/System32/Wbem/bfort...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/bfort...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/bfort...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/bfort...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/bfort...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/bfort...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/bfort...not found Checking for program /home/semih/bfort...not found Checking for program /home/semih/petsc/bin/win32fe/bfort...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/doctext...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/doctext...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/doctext...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/doctext...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/doctext...not found Checking for program /cygdrive/c/MSMPI/Bin/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/doctext...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/doctext...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/doctext...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/doctext...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/doctext...not found Checking for program /cygdrive/c/Windows/system32/doctext...not found Checking for program /cygdrive/c/Windows/doctext...not found Checking for program /cygdrive/c/Windows/System32/Wbem/doctext...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/doctext...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/doctext...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/doctext...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/doctext...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/doctext...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/doctext...not found Checking for program /home/semih/doctext...not found Checking for program /home/semih/petsc/bin/win32fe/doctext...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/mapnames...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/mapnames...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/mapnames...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/mapnames...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/mapnames...not found Checking for program /cygdrive/c/MSMPI/Bin/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/mapnames...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/mapnames...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/mapnames...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/mapnames...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/mapnames...not found Checking for program /cygdrive/c/Windows/system32/mapnames...not found Checking for program /cygdrive/c/Windows/mapnames...not found Checking for program /cygdrive/c/Windows/System32/Wbem/mapnames...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/mapnames...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/mapnames...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/mapnames...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/mapnames...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/mapnames...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/mapnames...not found Checking for program /home/semih/mapnames...not found Checking for program /home/semih/petsc/bin/win32fe/mapnames...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/bib2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/bib2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/bib2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/bib2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/bib2html...not found Checking for program /cygdrive/c/MSMPI/Bin/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/bib2html...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/bib2html...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/bib2html...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/bib2html...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/bib2html...not found Checking for program /cygdrive/c/Windows/system32/bib2html...not found Checking for program /cygdrive/c/Windows/bib2html...not found Checking for program /cygdrive/c/Windows/System32/Wbem/bib2html...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/bib2html...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/bib2html...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/bib2html...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/bib2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/bib2html...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/bib2html...not found Checking for program /home/semih/bib2html...not found Checking for program /home/semih/petsc/bin/win32fe/bib2html...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/pdflatex...not found Checking for program /cygdrive/c/MSMPI/Bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/pdflatex...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/pdflatex...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/pdflatex...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/pdflatex...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/pdflatex...not found Checking for program /cygdrive/c/Windows/system32/pdflatex...not found Checking for program /cygdrive/c/Windows/pdflatex...not found Checking for program /cygdrive/c/Windows/System32/Wbem/pdflatex...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/pdflatex...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/pdflatex...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/pdflatex...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/pdflatex...not found Checking for program /home/semih/pdflatex...not found Checking for program /home/semih/petsc/bin/win32fe/pdflatex...not found Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.sowing(/home/semih/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing-1.1.16g Do not need to rebuild sowing Executing: cp -f /home/semih/petsc/arch-mswin-c-debug/externalpackages/sowing-1.1.16g/sowing /home/semih/petsc/arch-mswin-c-debug/conf/sowing Executing: cp -f /home/semih/petsc/arch-mswin-c-debug/externalpackages/sowing-1.1.16g/sowing /home/semih/petsc/arch-mswin-c-debug/conf/sowing Executing: cp -f /home/semih/petsc/arch-mswin-c-debug/externalpackages/sowing-1.1.16g/sowing /home/semih/petsc/arch-mswin-c-debug/conf/sowing Defined make macro "BFORT " to "/home/semih/petsc/arch-mswin-c-debug/bin/bfort" Defined make macro "DOCTEXT " to "/home/semih/petsc/arch-mswin-c-debug/bin/doctext" Defined make macro "MAPNAMES " to "/home/semih/petsc/arch-mswin-c-debug/bin/mapnames" Defined make macro "BIB2HTML " to "/home/semih/petsc/arch-mswin-c-debug/bin/bib2html" Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/pdflatex...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/pdflatex...not found Checking for program /cygdrive/c/MSMPI/Bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/pdflatex...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/pdflatex...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/pdflatex...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/pdflatex...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/pdflatex...not found Checking for program /cygdrive/c/Windows/system32/pdflatex...not found Checking for program /cygdrive/c/Windows/pdflatex...not found Checking for program /cygdrive/c/Windows/System32/Wbem/pdflatex...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/pdflatex...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/pdflatex...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/pdflatex...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/pdflatex...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/pdflatex...not found Checking for program /home/semih/pdflatex...not found Checking for program /home/semih/petsc/bin/win32fe/pdflatex...not found Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/home/semih/petsc/arch-mswin-c-debug/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.sowing(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.sowing(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.saws(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.saws(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PVODE(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PVODE(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.pcbddc(/home/semih/petsc/config/PETSc/packages/pcbddc.py:21) TESTING: configureLibrary from PETSc.packages.pcbddc(config/PETSc/packages/pcbddc.py:21) ================================================================================ TEST checkSharedLibrary from PETSc.packages.pcbddc(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.pcbddc(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PARTY(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PARTY(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.papi(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.papi(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pami(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pami(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.P3Dlib(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.P3Dlib(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengles(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.opengles(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opencl(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.opencl(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.viennacl(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.viennacl(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PTScotch(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PTScotch(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Numpy(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Numpy(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpe(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.mpe(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Matlab(/home/semih/petsc/config/PETSc/packages/Matlab.py:36) TESTING: alternateConfigureLibrary from PETSc.packages.Matlab(config/PETSc/packages/Matlab.py:36) ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MatlabEngine(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.MatlabEngine(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Mathematica(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Mathematica(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Disabled Lgrind ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.java(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.java(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hwloc(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.hwloc(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.opengl(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.opengl(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.glut(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.glut(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Generator(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Generator(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.fftw(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.fftw(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.FFC(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.FFC(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.expat(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.expat(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.cuda(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.cuda(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.pthread(/home/semih/petsc/config/PETSc/packages/pthread.py:26) TESTING: configureLibrary from PETSc.packages.pthread(config/PETSc/packages/pthread.py:26) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Package specific search directory PTHREAD: ['libpthread.a'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library ['libpthread.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lpthread -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBPTHREAD" to "1" Popping language C Checking for headers Package specific search directory PTHREAD: [] Pushing language C ================================================================================ TEST checkInclude from config.headers(/home/semih/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in [] Checking include with compiler flags var CPPFLAGS [] Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers /tmp/petsc-DZOa4u/config.headers/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/config.headers/conftest.c" # 1 "/tmp/petsc-DZOa4u/config.headers/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/config.headers/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 14 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 20 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/_ansi.h" 1 3 4 # 13 "/usr/include/_ansi.h" 3 4 #define _ANSIDECL_H_ # 1 "/usr/include/newlib.h" 1 3 4 #define __NEWLIB_H__ 1 #define _NEWLIB_VERSION "2.1.0" #define _WANT_IO_C99_FORMATS 1 #define _WANT_IO_LONG_LONG 1 #define _WANT_IO_LONG_DOUBLE 1 #define _WANT_IO_POS_ARGS 1 #define _MB_CAPABLE 1 #define _MB_LEN_MAX 8 # 54 "/usr/include/newlib.h" 3 4 #define _ATEXIT_DYNAMIC_ALLOC 1 #define _HAVE_LONG_DOUBLE 1 #define _HAVE_CC_INHIBIT_LOOP_TO_LIBCALL 1 #define _FVWRITE_IN_STREAMIO 1 #define _FSEEK_OPTIMIZATION 1 #define _WIDE_ORIENT 1 #define _UNBUF_STREAM_OPT 1 # 16 "/usr/include/_ansi.h" 2 3 4 # 1 "/usr/include/sys/config.h" 1 3 4 #define __SYS_CONFIG_H__ # 1 "/usr/include/machine/ieeefp.h" 1 3 4 # 355 "/usr/include/machine/ieeefp.h" 3 4 #define __IEEE_LITTLE_ENDIAN # 5 "/usr/include/sys/config.h" 2 3 4 # 1 "/usr/include/sys/features.h" 1 3 4 # 22 "/usr/include/sys/features.h" 3 4 #define _SYS_FEATURES_H # 31 "/usr/include/sys/features.h" 3 4 #define __GNUC_PREREQ(maj,min) ((__GNUC__ << 16) + __GNUC_MINOR__ >= ((maj) << 16) + (min)) #define __GNUC_PREREQ__(ma,mi) __GNUC_PREREQ(ma, mi) # 109 "/usr/include/sys/features.h" 3 4 #define _POSIX_VERSION 200112L #define _POSIX2_VERSION 200112L #define _XOPEN_VERSION 600 #define _POSIX_ADVISORY_INFO 200112L #define _POSIX_CHOWN_RESTRICTED 1 #define _POSIX_CLOCK_SELECTION 200112L #define _POSIX_CPUTIME 200112L #define _POSIX_FSYNC 200112L #define _POSIX_IPV6 200112L #define _POSIX_JOB_CONTROL 1 #define _POSIX_MAPPED_FILES 200112L #define _POSIX_MEMLOCK_RANGE 200112L #define _POSIX_MEMORY_PROTECTION 200112L #define _POSIX_MESSAGE_PASSING 200112L #define _POSIX_MONOTONIC_CLOCK 200112L #define _POSIX_NO_TRUNC 1 #define _POSIX_PRIORITY_SCHEDULING 200112L #define _POSIX_RAW_SOCKETS 200112L #define _POSIX_READER_WRITER_LOCKS 200112L #define _POSIX_REALTIME_SIGNALS 200112L #define _POSIX_REGEXP 1 #define _POSIX_SAVED_IDS 1 #define _POSIX_SEMAPHORES 200112L #define _POSIX_SHARED_MEMORY_OBJECTS 200112L #define _POSIX_SHELL 1 #define _POSIX_SPIN_LOCKS 200112L #define _POSIX_SYNCHRONIZED_IO 200112L #define _POSIX_THREAD_ATTR_STACKADDR 200112L #define _POSIX_THREAD_ATTR_STACKSIZE 200112L #define _POSIX_THREAD_CPUTIME 200112L #define _POSIX_THREAD_PRIORITY_SCHEDULING 200112L #define _POSIX_THREAD_PROCESS_SHARED 200112L #define _POSIX_THREAD_SAFE_FUNCTIONS 200112L #define _POSIX_THREADS 200112L #define _POSIX_TIMERS 1 #define _POSIX_VDISABLE '\0' #define _POSIX2_C_BIND 200112L #define _POSIX2_C_DEV 200112L #define _POSIX2_CHAR_TERM 200112L # 173 "/usr/include/sys/features.h" 3 4 #define _POSIX2_SW_DEV 200112L #define _POSIX2_UPE 200112L #define _POSIX_V6_ILP32_OFF32 -1 #define _POSIX_V6_ILP32_OFFBIG -1 #define _POSIX_V6_LP64_OFF64 1 #define _POSIX_V6_LPBIG_OFFBIG 1 #define _XBS5_ILP32_OFF32 _POSIX_V6_ILP32_OFF32 #define _XBS5_ILP32_OFFBIG _POSIX_V6_ILP32_OFFBIG #define _XBS5_LP64_OFF64 _POSIX_V6_LP64_OFF64 #define _XBS5_LPBIG_OFFBIG _POSIX_V6_LPBIG_OFFBIG #define _XOPEN_CRYPT 1 #define _XOPEN_ENH_I18N 1 #define _XOPEN_SHM 1 # 203 "/usr/include/sys/features.h" 3 4 #define __STDC_ISO_10646__ 200305L # 6 "/usr/include/sys/config.h" 2 3 4 # 212 "/usr/include/sys/config.h" 3 4 #define _POINTER_INT long #undef __RAND_MAX #define __RAND_MAX 0x7fffffff # 1 "/usr/include/cygwin/config.h" 1 3 4 # 20 "/usr/include/cygwin/config.h" 3 4 #define _CYGWIN_CONFIG_H #define __DYNAMIC_REENT__ # 60 "/usr/include/cygwin/config.h" 3 4 #define __SYMBOL_PREFIX #define _SYMSTR(x) __SYMBOL_PREFIX #x #define __FILENAME_MAX__ 4096 #define _READ_WRITE_RETURN_TYPE _ssize_t #define _READ_WRITE_BUFSIZE_TYPE size_t #define __LARGE64_FILES 1 #define __USE_INTERNAL_STAT64 1 #define __LINUX_ERRNO_EXTENSIONS__ 1 #define _MB_EXTENDED_CHARSETS_ALL 1 #define __HAVE_LOCALE_INFO__ 1 #define __HAVE_LOCALE_INFO_EXTENDED__ 1 #define _WANT_C99_TIME_FORMATS 1 #define _GLIBC_EXTENSION 1 #define _STDIO_BSD_SEMANTICS 1 #define __TM_GMTOFF tm_gmtoff #define __TM_ZONE tm_zone #define __EXPORT #define __IMPORT __declspec(dllimport) #define DEFAULT_LOCALE "C.UTF-8" # 227 "/usr/include/sys/config.h" 2 3 4 #define __USE_XOPEN2K 1 # 278 "/usr/include/sys/config.h" 3 4 #define _MB_EXTENDED_CHARSETS_ISO 1 #define _MB_EXTENDED_CHARSETS_WINDOWS 1 # 17 "/usr/include/_ansi.h" 2 3 4 #define _HAVE_STDC # 44 "/usr/include/_ansi.h" 3 4 #define _BEGIN_STD_C #define _END_STD_C #define _NOTHROW #define _PTR void * #define _AND , #define _NOARGS void #define _CONST const #define _VOLATILE volatile #define _SIGNED signed #define _DOTS , ... #define _VOID void #define _EXFUN_NOTHROW(name,proto) __cdecl name proto _NOTHROW #define _EXFUN(name,proto) __cdecl name proto #define _EXPARM(name,proto) (* __cdecl name) proto #define _EXFNPTR(name,proto) (__cdecl * name) proto #define _DEFUN(name,arglist,args) name(args) #define _DEFUN_VOID(name) name(_NOARGS) #define _CAST_VOID (void) #define _LONG_DOUBLE long double #define _LONG_LONG_TYPE long long #define _PARAMS(paramlist) paramlist # 105 "/usr/include/_ansi.h" 3 4 #define _ATTRIBUTE(attrs) __attribute__ (attrs) # 127 "/usr/include/_ansi.h" 3 4 #define _ELIDABLE_INLINE extern __inline__ _ATTRIBUTE ((__always_inline__)) #define _NOINLINE __attribute__ ((__noinline__)) #define _NOINLINE_STATIC _NOINLINE static # 21 "/usr/include/sys/types.h" 2 3 4 #define __INTTYPES_DEFINED__ # 1 "/usr/include/machine/_types.h" 1 3 4 #define _MACHINE__TYPES_H # 1 "/usr/include/machine/_default_types.h" 1 3 4 #define _MACHINE__DEFAULT_TYPES_H # 15 "/usr/include/machine/_default_types.h" 3 4 #define __EXP(x) __ ##x ##__ # 27 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; #define ___int8_t_defined 1 typedef short int __int16_t; typedef short unsigned int __uint16_t; #define ___int16_t_defined 1 # 63 "/usr/include/machine/_default_types.h" 3 4 typedef int __int32_t; typedef unsigned int __uint32_t; #define ___int32_t_defined 1 # 89 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int64_t; typedef long unsigned int __uint64_t; #define ___int64_t_defined 1 # 120 "/usr/include/machine/_default_types.h" 3 4 typedef signed char __int_least8_t; typedef unsigned char __uint_least8_t; #define ___int_least8_t_defined 1 # 146 "/usr/include/machine/_default_types.h" 3 4 typedef short int __int_least16_t; typedef short unsigned int __uint_least16_t; #define ___int_least16_t_defined 1 # 168 "/usr/include/machine/_default_types.h" 3 4 typedef int __int_least32_t; typedef unsigned int __uint_least32_t; #define ___int_least32_t_defined 1 # 186 "/usr/include/machine/_default_types.h" 3 4 typedef long int __int_least64_t; typedef long unsigned int __uint_least64_t; #define ___int_least64_t_defined 1 typedef long int __intptr_t; typedef long unsigned int __uintptr_t; # 214 "/usr/include/machine/_default_types.h" 3 4 #undef __EXP # 8 "/usr/include/machine/_types.h" 2 3 4 # 26 "/usr/include/sys/types.h" 2 3 4 # 60 "/usr/include/sys/types.h" 3 4 #define _SYS_TYPES_H # 1 "/usr/include/sys/_types.h" 1 3 4 # 10 "/usr/include/sys/_types.h" 3 4 #define _SYS__TYPES_H # 1 "/usr/include/sys/lock.h" 1 3 4 # 12 "/usr/include/sys/lock.h" 3 4 #define _SYS_LOCK_H_ typedef void *_LOCK_T; #define _LOCK_RECURSIVE_T _LOCK_T #define _LOCK_T_RECURSIVE_INITIALIZER ((_LOCK_T)18) #define _LOCK_T_INITIALIZER ((_LOCK_T)19) #define __LOCK_INIT(CLASS,NAME) CLASS _LOCK_T NAME = _LOCK_T_INITIALIZER; #define __LOCK_INIT_RECURSIVE(CLASS,NAME) CLASS _LOCK_T NAME = _LOCK_T_RECURSIVE_INITIALIZER; #define __lock_init(__lock) __cygwin_lock_init(&__lock) #define __lock_init_recursive(__lock) __cygwin_lock_init_recursive(&__lock) #define __lock_close(__lock) __cygwin_lock_fini(&__lock) #define __lock_close_recursive(__lock) __cygwin_lock_fini(&__lock) #define __lock_acquire(__lock) __cygwin_lock_lock(&__lock) #define __lock_acquire_recursive(__lock) __cygwin_lock_lock(&__lock) #define __lock_try_acquire(lock) __cygwin_lock_trylock(&__lock) #define __lock_try_acquire_recursive(lock) __cygwin_lock_trylock(&__lock) #define __lock_release(__lock) __cygwin_lock_unlock(&__lock) #define __lock_release_recursive(__lock) __cygwin_lock_unlock(&__lock) void __cygwin_lock_init(_LOCK_T *); void __cygwin_lock_init_recursive(_LOCK_T *); void __cygwin_lock_fini(_LOCK_T *); void __cygwin_lock_lock(_LOCK_T *); int __cygwin_lock_trylock(_LOCK_T *); void __cygwin_lock_unlock(_LOCK_T *); # 14 "/usr/include/sys/_types.h" 2 3 4 typedef long _off_t; typedef short __dev_t; typedef unsigned short __uid_t; typedef unsigned short __gid_t; __extension__ typedef long long _off64_t; typedef long _fpos_t; typedef _off64_t _fpos64_t; # 54 "/usr/include/sys/_types.h" 3 4 #define unsigned signed typedef long signed int _ssize_t; #undef unsigned # 66 "/usr/include/sys/_types.h" 3 4 #define __need_wint_t # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 348 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define _WINT_T typedef unsigned int wint_t; #undef __need_wint_t # 408 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_NULL # 68 "/usr/include/sys/_types.h" 2 3 4 typedef struct { int __count; union { wint_t __wch; unsigned char __wchb[4]; } __value; } _mbstate_t; typedef _LOCK_T _flock_t; typedef void *_iconv_t; # 62 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 1 3 4 # 39 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define _STDDEF_H #define _STDDEF_H_ #define _ANSI_STDDEF_H # 136 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define _PTRDIFF_T #define _T_PTRDIFF_ #define _T_PTRDIFF #define __PTRDIFF_T #define _PTRDIFF_T_ #define _BSD_PTRDIFF_T_ #define ___int_ptrdiff_t_h #define _GCC_PTRDIFF_T typedef long int ptrdiff_t; # 158 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_ptrdiff_t # 184 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define __size_t__ #define __SIZE_T__ #define _SIZE_T #define _SYS_SIZE_T_H #define _T_SIZE_ #define _T_SIZE #define __SIZE_T #define _SIZE_T_ #define _BSD_SIZE_T_ #define _SIZE_T_DEFINED_ #define _SIZE_T_DEFINED #define _BSD_SIZE_T_DEFINED_ #define _SIZE_T_DECLARED #define ___int_size_t_h #define _GCC_SIZE_T #define _SIZET_ #define __size_t typedef long unsigned int size_t; # 234 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_size_t # 263 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #define __wchar_t__ #define __WCHAR_T__ #define _WCHAR_T #define _T_WCHAR_ #define _T_WCHAR #define __WCHAR_T #define _WCHAR_T_ #define _BSD_WCHAR_T_ #define _WCHAR_T_DEFINED_ #define _WCHAR_T_DEFINED #define _WCHAR_T_H #define ___int_wchar_t_h #define __INT_WCHAR_T_H #define _GCC_WCHAR_T #define _WCHAR_T_DECLARED # 290 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef _BSD_WCHAR_T_ # 324 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 typedef short unsigned int wchar_t; # 343 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef __need_wchar_t # 397 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stddef.h" 3 4 #undef NULL #define NULL ((void *)0) #undef __need_NULL #define offsetof(TYPE,MEMBER) __builtin_offsetof (TYPE, MEMBER) # 70 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 #define _MACHTYPES_H_ # 13 "/usr/include/machine/types.h" 3 4 #define _CLOCK_T_ unsigned long #define _TIME_T_ long #define _CLOCKID_T_ unsigned long #define _TIMER_T_ unsigned long typedef long int __off_t; typedef int __pid_t; __extension__ typedef long long int __loff_t; # 71 "/usr/include/sys/types.h" 2 3 4 # 80 "/usr/include/sys/types.h" 3 4 #define _ST_INT32 __attribute__ ((__mode__ (__SI__))) #define physadr physadr_t #define quad quad_t typedef unsigned char u_char; #define __u_char_defined typedef unsigned short u_short; #define __u_short_defined typedef unsigned int u_int; #define __u_int_defined typedef unsigned long u_long; #define __u_long_defined #define _BSDTYPES_DEFINED typedef unsigned short ushort; typedef unsigned int uint; typedef unsigned long ulong; typedef unsigned long clock_t; #define __clock_t_defined typedef long time_t; #define __time_t_defined #define __timespec_defined struct timespec { time_t tv_sec; long tv_nsec; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; typedef long daddr_t; #define __daddr_t_defined typedef char * caddr_t; #define __caddr_t_defined # 193 "/usr/include/sys/types.h" 3 4 typedef int pid_t; # 203 "/usr/include/sys/types.h" 3 4 typedef _ssize_t ssize_t; # 222 "/usr/include/sys/types.h" 3 4 typedef unsigned short nlink_t; # 232 "/usr/include/sys/types.h" 3 4 #define _SYS_TYPES_FD_SET #define NBBY 8 #define FD_SETSIZE 64 typedef long fd_mask; #define NFDBITS (sizeof (fd_mask) * NBBY) #define howmany(x,y) (((x)+((y)-1))/(y)) typedef struct _types_fd_set { fd_mask fds_bits[(((64)+(((sizeof (fd_mask) * 8))-1))/((sizeof (fd_mask) * 8)))]; } _types_fd_set; #define fd_set _types_fd_set #define FD_SET(n,p) ((p)->fds_bits[(n)/NFDBITS] |= (1L << ((n) % NFDBITS))) #define FD_CLR(n,p) ((p)->fds_bits[(n)/NFDBITS] &= ~(1L << ((n) % NFDBITS))) #define FD_ISSET(n,p) ((p)->fds_bits[(n)/NFDBITS] & (1L << ((n) % NFDBITS))) #define FD_ZERO(p) (__extension__ (void)({ size_t __i; char *__tmp = (char *)p; for (__i = 0; __i < sizeof (*(p)); ++__i) *__tmp++ = 0; })) # 270 "/usr/include/sys/types.h" 3 4 #undef __MS_types__ #undef _ST_INT32 typedef unsigned long clockid_t; #define __clockid_t_defined typedef unsigned long timer_t; #define __timer_t_defined typedef unsigned long useconds_t; typedef long suseconds_t; # 481 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/cygwin/types.h" 1 3 4 # 13 "/usr/include/cygwin/types.h" 3 4 #define _CYGWIN_TYPES_H # 1 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 12 "/usr/include/stdint.h" 3 4 #define _STDINT_H # 1 "/usr/include/bits/wordsize.h" 1 3 4 #define _WORDSIZE_H 1 #define __WORDSIZE 64 #define __WORDSIZE_COMPAT32 1 # 15 "/usr/include/stdint.h" 2 3 4 #define __int8_t_defined typedef signed char int8_t; typedef short int16_t; typedef int int32_t; typedef long int64_t; typedef unsigned char uint8_t; typedef unsigned short uint16_t; #define __uint32_t_defined typedef unsigned int uint32_t; typedef unsigned long uint64_t; typedef signed char int_least8_t; typedef short int_least16_t; typedef int int_least32_t; typedef long int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long uint_least64_t; typedef signed char int_fast8_t; typedef long int_fast16_t; typedef long int_fast32_t; typedef long int_fast64_t; typedef unsigned char uint_fast8_t; typedef unsigned long uint_fast16_t; typedef unsigned long uint_fast32_t; typedef unsigned long uint_fast64_t; # 89 "/usr/include/stdint.h" 3 4 #define __intptr_t_defined typedef long intptr_t; typedef unsigned long uintptr_t; typedef long intmax_t; typedef unsigned long uintmax_t; # 118 "/usr/include/stdint.h" 3 4 #define __I64(n) n ## L #define __U64(n) n ## UL #define INT8_MIN (-128) #define INT16_MIN (-32768) #define INT32_MIN (-2147483647 - 1) #define INT64_MIN (-__I64(9223372036854775807) - 1) #define INT8_MAX (127) #define INT16_MAX (32767) #define INT32_MAX (2147483647) #define INT64_MAX (__I64(9223372036854775807)) #define UINT8_MAX (255) #define UINT16_MAX (65535) #define UINT32_MAX (4294967295U) #define UINT64_MAX (__U64(18446744073709551615)) #define INT_LEAST8_MIN (-128) #define INT_LEAST16_MIN (-32768) #define INT_LEAST32_MIN (-2147483647 - 1) #define INT_LEAST64_MIN (-__I64(9223372036854775807) - 1) #define INT_LEAST8_MAX (127) #define INT_LEAST16_MAX (32767) #define INT_LEAST32_MAX (2147483647) #define INT_LEAST64_MAX (__I64(9223372036854775807)) #define UINT_LEAST8_MAX (255) #define UINT_LEAST16_MAX (65535) #define UINT_LEAST32_MAX (4294967295U) #define UINT_LEAST64_MAX (__U64(18446744073709551615)) #define INT_FAST8_MIN (-128) #define INT_FAST16_MIN (-__I64(9223372036854775807) - 1) #define INT_FAST32_MIN (-__I64(9223372036854775807) - 1) #define INT_FAST64_MIN (-__I64(9223372036854775807) - 1) #define INT_FAST8_MAX (127) #define INT_FAST16_MAX (__I64(9223372036854775807)) #define INT_FAST32_MAX (__I64(9223372036854775807)) #define INT_FAST64_MAX (__I64(9223372036854775807)) #define UINT_FAST8_MAX (255) #define UINT_FAST16_MAX (__U64(18446744073709551615)) #define UINT_FAST32_MAX (__U64(18446744073709551615)) #define UINT_FAST64_MAX (__U64(18446744073709551615)) #define INTPTR_MIN (-__I64(9223372036854775807) - 1) #define INTPTR_MAX (__I64(9223372036854775807)) #define UINTPTR_MAX (__U64(18446744073709551615)) # 205 "/usr/include/stdint.h" 3 4 #define INTMAX_MIN (-__I64(9223372036854775807) - 1) #define INTMAX_MAX (__I64(9223372036854775807)) #define UINTMAX_MAX (__U64(18446744073709551615)) #define PTRDIFF_MIN (-9223372036854775807L - 1) #define PTRDIFF_MAX (9223372036854775807L) #define SIG_ATOMIC_MIN (-2147483647 - 1) #define SIG_ATOMIC_MAX (2147483647) #define SIZE_MAX (18446744073709551615UL) #define WCHAR_MIN __WCHAR_MIN__ #define WCHAR_MAX __WCHAR_MAX__ #define WINT_MIN 0U #define WINT_MAX (4294967295U) # 260 "/usr/include/stdint.h" 3 4 #define INT8_C(x) x #define INT16_C(x) x #define INT32_C(x) x #define INT64_C(x) x ## L #define UINT8_C(x) x #define UINT16_C(x) x #define UINT32_C(x) x ## U #define UINT64_C(x) x ## UL #define INTMAX_C(x) x ## L #define UINTMAX_C(x) x ## UL # 10 "/usr/lib/gcc/x86_64-pc-cygwin/4.8.3/include/stdint.h" 2 3 4 #define _GCC_WRAP_STDINT_H # 21 "/usr/include/cygwin/types.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 12 "/usr/include/endian.h" 3 4 #define _ENDIAN_H_ # 1 "/usr/include/bits/endian.h" 1 3 4 # 12 "/usr/include/bits/endian.h" 3 4 #define _BITS_ENDIAN_H_ #define __BIG_ENDIAN 4321 #define __LITTLE_ENDIAN 1234 #define __BYTE_ORDER __LITTLE_ENDIAN # 16 "/usr/include/endian.h" 2 3 4 #define LITTLE_ENDIAN __LITTLE_ENDIAN #define BIG_ENDIAN __BIG_ENDIAN #define PDP_ENDIAN __PDP_ENDIAN #define BYTE_ORDER __BYTE_ORDER #define __LONG_LONG_PAIR(HI,LO) LO, HI # 1 "/usr/include/byteswap.h" 1 3 4 # 12 "/usr/include/byteswap.h" 3 4 #define _BYTESWAP_H static __inline unsigned short bswap_16 (unsigned short __x) { return (__x >> 8) | (__x << 8); } static __inline unsigned int bswap_32 (unsigned int __x) { return (bswap_16 (__x & 0xffff) << 16) | (bswap_16 (__x >> 16)); } static __inline unsigned long long bswap_64 (unsigned long long __x) { return (((unsigned long long) bswap_32 (__x & 0xffffffffull)) << 32) | (bswap_32 (__x >> 32)); } # 33 "/usr/include/endian.h" 2 3 4 #define htobe16(x) bswap_16(x) #define htobe32(x) bswap_32(x) #define htobe64(x) bswap_64(x) #define be16toh(x) bswap_16(x) #define be32toh(x) bswap_32(x) #define be64toh(x) bswap_64(x) #define htole16(x) (x) #define htole32(x) (x) #define htole64(x) (x) #define le16toh(x) (x) #define le32toh(x) (x) #define le64toh(x) (x) # 22 "/usr/include/cygwin/types.h" 2 3 4 #define __timespec_t_defined typedef struct timespec timespec_t; #define __timestruc_t_defined typedef struct timespec timestruc_t; #define __off_t_defined typedef _off_t off_t; typedef __loff_t loff_t; #define __dev_t_defined typedef __int16_t __dev16_t; typedef __uint32_t dev_t; #define __blksize_t_defined Found header files ['pthread.h'] in [] Popping language C All intermediate test results are stored in /tmp/petsc-DZOa4u/PETSc.packages.pthread Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c:6:1: error: unknown type name ‘pthread_barrier_t’ pthread_barrier_t *a; ^ /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c:6:1: error: unknown type name ‘cpu_set_t’ cpu_set_t *a; ^ /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c:6:12: warning: unused variable ‘a’ [-Wunused-variable] cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c stdout: # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" # 1 "/home/semih/petsc//" # 1 "" #define __STDC__ 1 #define __STDC_HOSTED__ 1 #define __GNUC__ 4 #define __GNUC_MINOR__ 8 #define __GNUC_PATCHLEVEL__ 3 #define __VERSION__ "4.8.3" #define __ATOMIC_RELAXED 0 #define __ATOMIC_SEQ_CST 5 #define __ATOMIC_ACQUIRE 2 #define __ATOMIC_RELEASE 3 #define __ATOMIC_ACQ_REL 4 #define __ATOMIC_CONSUME 1 #define __pic__ 1 #define __PIC__ 1 #define __FINITE_MATH_ONLY__ 0 #define _LP64 1 #define __LP64__ 1 #define __SIZEOF_INT__ 4 #define __SIZEOF_LONG__ 8 #define __SIZEOF_LONG_LONG__ 8 #define __SIZEOF_SHORT__ 2 #define __SIZEOF_FLOAT__ 4 #define __SIZEOF_DOUBLE__ 8 #define __SIZEOF_LONG_DOUBLE__ 16 #define __SIZEOF_SIZE_T__ 8 #define __CHAR_BIT__ 8 #define __BIGGEST_ALIGNMENT__ 16 #define __ORDER_LITTLE_ENDIAN__ 1234 #define __ORDER_BIG_ENDIAN__ 4321 #define __ORDER_PDP_ENDIAN__ 3412 #define __BYTE_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __FLOAT_WORD_ORDER__ __ORDER_LITTLE_ENDIAN__ #define __SIZEOF_POINTER__ 8 #define __SIZE_TYPE__ long unsigned int #define __PTRDIFF_TYPE__ long int #define __WCHAR_TYPE__ short unsigned int #define __WINT_TYPE__ unsigned int #define __INTMAX_TYPE__ long int #define __UINTMAX_TYPE__ long unsigned int #define __CHAR16_TYPE__ short unsigned int #define __CHAR32_TYPE__ unsigned int #define __SIG_ATOMIC_TYPE__ int #define __INT8_TYPE__ signed char #define __INT16_TYPE__ short int #define __INT32_TYPE__ int #define __INT64_TYPE__ long int #define __UINT8_TYPE__ unsigned char #define __UINT16_TYPE__ short unsigned int #define __UINT32_TYPE__ unsigned int #define __UINT64_TYPE__ long unsigned int #define __INT_LEAST8_TYPE__ signed char #define __INT_LEAST16_TYPE__ short int #define __INT_LEAST32_TYPE__ int #define __INT_LEAST64_TYPE__ long int #define __UINT_LEAST8_TYPE__ unsigned char #define __UINT_LEAST16_TYPE__ short unsigned int #define __UINT_LEAST32_TYPE__ unsigned int #define __UINT_LEAST64_TYPE__ long unsigned int #define __INT_FAST8_TYPE__ signed char #define __INT_FAST16_TYPE__ long int #define __INT_FAST32_TYPE__ long int #define __INT_FAST64_TYPE__ long int #define __UINT_FAST8_TYPE__ unsigned char #define __UINT_FAST16_TYPE__ long unsigned int #define __UINT_FAST32_TYPE__ long unsigned int #define __UINT_FAST64_TYPE__ long unsigned int #define __INTPTR_TYPE__ long int #define __UINTPTR_TYPE__ long unsigned int #define __GXX_ABI_VERSION 1002 #define __SCHAR_MAX__ 127 #define __SHRT_MAX__ 32767 #define __INT_MAX__ 2147483647 #define __LONG_MAX__ 9223372036854775807L #define __LONG_LONG_MAX__ 9223372036854775807LL #define __WCHAR_MAX__ 65535 #define __WCHAR_MIN__ 0 #define __WINT_MAX__ 4294967295U #define __WINT_MIN__ 0U #define __PTRDIFF_MAX__ 9223372036854775807L #define __SIZE_MAX__ 18446744073709551615UL #define __INTMAX_MAX__ 9223372036854775807L #define __INTMAX_C(c) c ## L #define __UINTMAX_MAX__ 18446744073709551615UL #define __UINTMAX_C(c) c ## UL #define __SIG_ATOMIC_MAX__ 2147483647 #define __SIG_ATOMIC_MIN__ (-__SIG_ATOMIC_MAX__ - 1) #define __INT8_MAX__ 127 #define __INT16_MAX__ 32767 #define __INT32_MAX__ 2147483647 #define __INT64_MAX__ 9223372036854775807L #define __UINT8_MAX__ 255 #define __UINT16_MAX__ 65535 #define __UINT32_MAX__ 4294967295U #define __UINT64_MAX__ 18446744073709551615UL #define __INT_LEAST8_MAX__ 127 #define __INT8_C(c) c #define __INT_LEAST16_MAX__ 32767 #define __INT16_C(c) c #define __INT_LEAST32_MAX__ 2147483647 #define __INT32_C(c) c #define __INT_LEAST64_MAX__ 9223372036854775807L #define __INT64_C(c) c ## L #define __UINT_LEAST8_MAX__ 255 #define __UINT8_C(c) c #define __UINT_LEAST16_MAX__ 65535 #define __UINT16_C(c) c #define __UINT_LEAST32_MAX__ 4294967295U #define __UINT32_C(c) c ## U #define __UINT_LEAST64_MAX__ 18446744073709551615UL #define __UINT64_C(c) c ## UL #define __INT_FAST8_MAX__ 127 #define __INT_FAST16_MAX__ 9223372036854775807L #define __INT_FAST32_MAX__ 9223372036854775807L #define __INT_FAST64_MAX__ 9223372036854775807L #define __UINT_FAST8_MAX__ 255 #define __UINT_FAST16_MAX__ 18446744073709551615UL #define __UINT_FAST32_MAX__ 18446744073709551615UL #define __UINT_FAST64_MAX__ 18446744073709551615UL #define __INTPTR_MAX__ 9223372036854775807L #define __UINTPTR_MAX__ 18446744073709551615UL #define __FLT_EVAL_METHOD__ 0 #define __DEC_EVAL_METHOD__ 2 #define __FLT_RADIX__ 2 #define __FLT_MANT_DIG__ 24 #define __FLT_DIG__ 6 #define __FLT_MIN_EXP__ (-125) #define __FLT_MIN_10_EXP__ (-37) #define __FLT_MAX_EXP__ 128 #define __FLT_MAX_10_EXP__ 38 #define __FLT_DECIMAL_DIG__ 9 #define __FLT_MAX__ 3.40282346638528859812e+38F #define __FLT_MIN__ 1.17549435082228750797e-38F #define __FLT_EPSILON__ 1.19209289550781250000e-7F #define __FLT_DENORM_MIN__ 1.40129846432481707092e-45F #define __FLT_HAS_DENORM__ 1 #define __FLT_HAS_INFINITY__ 1 #define __FLT_HAS_QUIET_NAN__ 1 #define __DBL_MANT_DIG__ 53 #define __DBL_DIG__ 15 #define __DBL_MIN_EXP__ (-1021) #define __DBL_MIN_10_EXP__ (-307) #define __DBL_MAX_EXP__ 1024 #define __DBL_MAX_10_EXP__ 308 #define __DBL_DECIMAL_DIG__ 17 #define __DBL_MAX__ ((double)1.79769313486231570815e+308L) #define __DBL_MIN__ ((double)2.22507385850720138309e-308L) #define __DBL_EPSILON__ ((double)2.22044604925031308085e-16L) #define __DBL_DENORM_MIN__ ((double)4.94065645841246544177e-324L) #define __DBL_HAS_DENORM__ 1 #define __DBL_HAS_INFINITY__ 1 #define __DBL_HAS_QUIET_NAN__ 1 #define __LDBL_MANT_DIG__ 64 #define __LDBL_DIG__ 18 #define __LDBL_MIN_EXP__ (-16381) #define __LDBL_MIN_10_EXP__ (-4931) #define __LDBL_MAX_EXP__ 16384 #define __LDBL_MAX_10_EXP__ 4932 #define __DECIMAL_DIG__ 21 #define __LDBL_MAX__ 1.18973149535723176502e+4932L #define __LDBL_MIN__ 3.36210314311209350626e-4932L #define __LDBL_EPSILON__ 1.08420217248550443401e-19L #define __LDBL_DENORM_MIN__ 3.64519953188247460253e-4951L #define __LDBL_HAS_DENORM__ 1 #define __LDBL_HAS_INFINITY__ 1 #define __LDBL_HAS_QUIET_NAN__ 1 #define __DEC32_MANT_DIG__ 7 #define __DEC32_MIN_EXP__ (-94) #define __DEC32_MAX_EXP__ 97 #define __DEC32_MIN__ 1E-95DF #define __DEC32_MAX__ 9.999999E96DF #define __DEC32_EPSILON__ 1E-6DF #define __DEC32_SUBNORMAL_MIN__ 0.000001E-95DF #define __DEC64_MANT_DIG__ 16 #define __DEC64_MIN_EXP__ (-382) #define __DEC64_MAX_EXP__ 385 #define __DEC64_MIN__ 1E-383DD #define __DEC64_MAX__ 9.999999999999999E384DD #define __DEC64_EPSILON__ 1E-15DD #define __DEC64_SUBNORMAL_MIN__ 0.000000000000001E-383DD #define __DEC128_MANT_DIG__ 34 #define __DEC128_MIN_EXP__ (-6142) #define __DEC128_MAX_EXP__ 6145 #define __DEC128_MIN__ 1E-6143DL #define __DEC128_MAX__ 9.999999999999999999999999999999999E6144DL #define __DEC128_EPSILON__ 1E-33DL #define __DEC128_SUBNORMAL_MIN__ 0.000000000000000000000000000000001E-6143DL #define __REGISTER_PREFIX__ #define __USER_LABEL_PREFIX__ #define __GNUC_GNU_INLINE__ 1 #define __NO_INLINE__ 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_1 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_2 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_4 1 #define __GCC_HAVE_SYNC_COMPARE_AND_SWAP_8 1 #define __GCC_ATOMIC_BOOL_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR16_T_LOCK_FREE 2 #define __GCC_ATOMIC_CHAR32_T_LOCK_FREE 2 #define __GCC_ATOMIC_WCHAR_T_LOCK_FREE 2 #define __GCC_ATOMIC_SHORT_LOCK_FREE 2 #define __GCC_ATOMIC_INT_LOCK_FREE 2 #define __GCC_ATOMIC_LONG_LOCK_FREE 2 #define __GCC_ATOMIC_LLONG_LOCK_FREE 2 #define __GCC_ATOMIC_TEST_AND_SET_TRUEVAL 1 #define __GCC_ATOMIC_POINTER_LOCK_FREE 2 #define __GCC_HAVE_DWARF2_CFI_ASM 1 #define __PRAGMA_REDEFINE_EXTNAME 1 #define __SIZEOF_INT128__ 16 #define __SIZEOF_WCHAR_T__ 2 #define __SIZEOF_WINT_T__ 4 #define __SIZEOF_PTRDIFF_T__ 8 #define __amd64 1 #define __amd64__ 1 #define __x86_64 1 #define __x86_64__ 1 #define __ATOMIC_HLE_ACQUIRE 65536 #define __ATOMIC_HLE_RELEASE 131072 #define __k8 1 #define __k8__ 1 #define __code_model_medium__ 1 #define __MMX__ 1 #define __SSE__ 1 #define __SSE2__ 1 #define __FXSR__ 1 #define __SSE_MATH__ 1 #define __SSE2_MATH__ 1 #define __SEH__ 1 #define __stdcall __attribute__((__stdcall__)) #define __fastcall __attribute__((__fastcall__)) #define __thiscall __attribute__((__thiscall__)) #define __cdecl __attribute__((__cdecl__)) #define _stdcall __attribute__((__stdcall__)) #define _fastcall __attribute__((__fastcall__)) #define _thiscall __attribute__((__thiscall__)) #define _cdecl __attribute__((__cdecl__)) #define __GXX_MERGED_TYPEINFO_NAMES 0 #define __GXX_TYPEINFO_EQUALITY_INLINE 0 #define __CYGWIN__ 1 #define __unix__ 1 #define __unix 1 #define __declspec(x) __attribute__((x)) #define __DECIMAL_BID_FORMAT__ 1 # 1 "" #define unix 1 # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/confdefs.h" 1 #define INCLUDED_CONFDEFS_H #define IS_COLORING_MAX 65535 #define STDC_HEADERS 1 #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #define PETSC_HAVE_GZIP 1 #define PETSC_HAVE_STRING_H 1 #define PETSC_HAVE_SYS_TIMES_H 1 #define PETSC_HAVE_SYS_TYPES_H 1 #define PETSC_HAVE_ENDIAN_H 1 #define PETSC_HAVE_SYS_PROCFS_H 1 #define PETSC_HAVE_DLFCN_H 1 #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #define PETSC_HAVE_SCHED_H 1 #define PETSC_HAVE_STDINT_H 1 #define PETSC_HAVE_TIME_H 1 #define PETSC_HAVE_MATH_H 1 #define PETSC_HAVE_SYS_RESOURCE_H 1 #define PETSC_HAVE_STDLIB_H 1 #define PETSC_HAVE_SYS_PARAM_H 1 #define PETSC_HAVE_PTHREAD_H 1 #define PETSC_HAVE_UNISTD_H 1 #define PETSC_HAVE_SYS_WAIT_H 1 #define PETSC_HAVE_SETJMP_H 1 #define PETSC_HAVE_LIMITS_H 1 #define PETSC_HAVE_SYS_UTSNAME_H 1 #define PETSC_HAVE_NETINET_IN_H 1 #define PETSC_HAVE_SYS_SOCKET_H 1 #define PETSC_HAVE_FLOAT_H 1 #define PETSC_HAVE_SEARCH_H 1 #define PETSC_HAVE_WS2TCPIP_H 1 #define PETSC_TIME_WITH_SYS_TIME 1 #define PETSC_HAVE_NETDB_H 1 #define PETSC_HAVE_MALLOC_H 1 #define PETSC_HAVE_PWD_H 1 #define PETSC_HAVE_FCNTL_H 1 #define PETSC_HAVE_STRINGS_H 1 #define PETSC_HAVE_WINDOWSX_H 1 #define PETSC_HAVE_IEEEFP_H 1 #define PETSC_HAVE_SYS_SYSINFO_H 1 #define PETSC_HAVE_IO_H 1 #define PETSC_HAVE_SYS_TIME_H 1 #define PETSC_HAVE_RTLD_NOW 1 #define PETSC_HAVE_RTLD_LOCAL 1 #define PETSC_HAVE_RTLD_LAZY 1 #define PETSC_C_STATIC_INLINE static inline #define PETSC_HAVE_CXX_NAMESPACE 1 #define PETSC_HAVE_RTLD_GLOBAL 1 #define PETSC_C_RESTRICT __restrict__ #define PETSC_CXX_RESTRICT __restrict__ #define PETSC_CXX_STATIC_INLINE static inline #define PETSC_HAVE_LIBPTHREAD 1 #define PETSC_HAVE_LIBDL 1 #define PETSC_HAVE_TGAMMA 1 #define PETSC_HAVE_ERF 1 #define PETSC_ARCH "arch-mswin-c-debug" #define PETSC_CLANGUAGE_C 1 #define PETSC_USE_ERRORCHECKING 1 #define PETSC_SIZEOF_MPI_COMM 4 #define PETSC_BITS_PER_BYTE 8 #define PETSC_SIZEOF_MPI_FINT 4 #define PETSC_SIZEOF_VOID_P 8 #define PETSC_RETSIGTYPE void #define PETSC_HAVE_CXX_COMPLEX 1 #define PETSC_SIZEOF_LONG 8 #define PETSC_SIZEOF_SIZE_T 8 #define PETSC_HAVE_SIGINFO_T 1 #define PETSC_SIZEOF_CHAR 1 #define PETSC_SIZEOF_DOUBLE 8 #define PETSC_SIZEOF_FLOAT 4 #define PETSC_HAVE_C99_COMPLEX 1 #define PETSC_SIZEOF_INT 4 #define PETSC_SIZEOF_LONG_LONG 8 #define PETSC_SIZEOF_SHORT 2 #define PETSC_HAVE_STRCASECMP 1 #define PETSC_HAVE_GET_NPROCS 1 #define PETSC_HAVE_POPEN 1 #define PETSC_HAVE_SIGSET 1 #define PETSC_HAVE_GETWD 1 #define PETSC_HAVE_VSNPRINTF 1 #define PETSC_HAVE_TIMES 1 #define PETSC_HAVE_DLSYM 1 #define PETSC_HAVE_SNPRINTF 1 #define PETSC_HAVE_GETHOSTBYNAME 1 #define PETSC_HAVE_GETCWD 1 #define PETSC_HAVE_DLERROR 1 #define PETSC_HAVE_FORK 1 #define PETSC_HAVE_RAND 1 #define PETSC_HAVE_GETTIMEOFDAY 1 #define PETSC_HAVE_DLCLOSE 1 #define PETSC_HAVE_UNAME 1 #define PETSC_HAVE_GETHOSTNAME 1 #define PETSC_HAVE_MKSTEMP 1 #define PETSC_HAVE_SIGACTION 1 #define PETSC_HAVE_DRAND48 1 #define PETSC_HAVE_MEMALIGN 1 #define PETSC_HAVE_VA_COPY 1 #define PETSC_HAVE_CLOCK 1 #define PETSC_HAVE_ACCESS 1 #define PETSC_HAVE_SIGNAL 1 #define PETSC_HAVE_USLEEP 1 #define PETSC_HAVE_GETRUSAGE 1 #define PETSC_HAVE_VFPRINTF 1 #define PETSC_HAVE_NANOSLEEP 1 #define PETSC_HAVE_GETDOMAINNAME 1 #define PETSC_HAVE_TIME 1 #define PETSC_HAVE_LSEEK 1 #define PETSC_HAVE_SOCKET 1 #define PETSC_HAVE_SYSINFO 1 #define PETSC_HAVE_READLINK 1 #define PETSC_HAVE_REALPATH 1 #define PETSC_HAVE_DLOPEN 1 #define PETSC_HAVE_MEMMOVE 1 #define PETSC_HAVE_GETPAGESIZE 1 #define PETSC_HAVE_SLEEP 1 #define PETSC_HAVE_VPRINTF 1 #define PETSC_HAVE_BZERO 1 #define PETSC_SIGNAL_CAST #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #define PETSC_HAVE_MPI_IALLREDUCE 1 #define PETSC_HAVE_MPI_IN_PLACE 1 #define PETSC_HAVE_MPI_COMM_C2F 1 #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #define PETSC_HAVE_MPI_INT64_T 1 #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #define PETSC_HAVE_MPI_WIN_CREATE 1 #define PETSC_HAVE_MPI_TYPE_DUP 1 #define PETSC_HAVE_MPI_INIT_THREAD 1 #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #define PETSC_HAVE_MPI_COMM_F2C 1 #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #define PETSC_HAVE_MPICH_CH3_SOCK 1 #define PETSC_HAVE_MPI_COMBINER_DUP 1 #define PETSC_HAVE_MPIIO 1 #define PETSC_HAVE_MPI_COMM_SPAWN 1 #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #define PETSC_HAVE_MPI_FINT 1 #define PETSC_HAVE_MPI_IBARRIER 1 #define PETSC_HAVE_MPI_ALLTOALLW 1 #define PETSC_HAVE_MPI_REPLACE 1 #define PETSC_HAVE_MPI_EXSCAN 1 #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #define PETSC_HAVE_MPI_FINALIZED 1 #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #define PETSC_LEVEL1_DCACHE_SIZE 32768 #define PETSC_LEVEL1_DCACHE_ASSOC 2 #define PETSC__BSD_SOURCE 1 #define PETSC_USE_PROC_FOR_SIZE 1 #define PETSC_USE_INFO 1 #define PETSC_Alignx(a,b) #define PETSC_USE_BACKWARD_LOOP 1 #define PETSC_USE_DEBUG 1 #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #define PETSC_USE_LOG 1 #define PETSC_IS_COLOR_VALUE_TYPE short #define PETSC_USE_CTABLE 1 #define PETSC_USE_SCALAR_REAL 1 #define PETSC_HAVE_ISINF 1 #define PETSC_HAVE_ISNAN 1 #define PETSC_HAVE_ISNORMAL 1 #define PETSC_USE_REAL_DOUBLE 1 #define PETSC_MEMALIGN 16 #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #define PETSC_HAVE_SHARED_LIBRARIES 1 # 2 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" 2 # 1 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conffix.h" 1 #define INCLUDED_CONFFIX_H # 3 "/tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c" 2stderr: /tmp/petsc-DZOa4u/PETSc.packages.pthread/conftest.c:3:24: fatal error: sys/sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkSharedLibrary from PETSc.packages.pthread(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.pthread(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pthreadclasses(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pthreadclasses(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.openmp(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.openmp(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ctetgen(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.ctetgen(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Suggar(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Suggar(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Chaco(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Chaco(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ccafe(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.ccafe(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default PETSc clone, checking for c2html Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/c2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/c2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/c2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/c2html...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/c2html...not found Checking for program /cygdrive/c/MSMPI/Bin/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/c2html...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/c2html...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/c2html...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/c2html...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/c2html...not found Checking for program /cygdrive/c/Windows/system32/c2html...not found Checking for program /cygdrive/c/Windows/c2html...not found Checking for program /cygdrive/c/Windows/System32/Wbem/c2html...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/c2html...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/c2html...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/c2html...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/c2html...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/c2html...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/c2html...not found Checking for program /home/semih/c2html...not found Checking for program /home/semih/petsc/bin/win32fe/c2html...not found Installing c2html Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.c2html(/home/semih/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.c2html(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional c2html Looking for C2HTML in directory starting with c2html Found a copy of C2HTML in c2html-0.9.4 Do not need to rebuild c2html Defined make macro "C2HTML" to "/home/semih/petsc/arch-mswin-c-debug/bin/c2html" Not checking for library in Download C2HTML: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download C2HTML: ['/home/semih/petsc/arch-mswin-c-debug/include'] ================================================================================ TEST checkSharedLibrary from PETSc.packages.c2html(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.c2html(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.babel(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.babel(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from PETSc.packages.X(/home/semih/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Package specific search directory X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lX11 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory X: ['lib64/libX11.a'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['lib64/libX11.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lX11 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Directory does not exist: /opt/X11 (while checking "Package specific search directory X" for "['/opt/X11/lib/libX11.a']") Directory does not exist: /opt/X11 (while checking "Package specific search directory X" for "['/opt/X11/lib64/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.5.sdk/usr/X11/lib/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.5.sdk/usr/X11 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.5.sdk/usr/X11/lib64/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib/libX11.a']") Directory does not exist: /Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6 (while checking "Package specific search directory X" for "['/Developer/SDKs/MacOSX10.4u.sdk/usr/X11R6/lib64/libX11.a']") Directory does not exist: /usr/X11 (while checking "Package specific search directory X" for "['/usr/X11/lib/libX11.a']") Directory does not exist: /usr/X11 (while checking "Package specific search directory X" for "['/usr/X11/lib64/libX11.a']") Directory does not exist: /usr/X11R6 (while checking "Package specific search directory X" for "['/usr/X11R6/lib/libX11.a']") Directory does not exist: /usr/X11R6 (while checking "Package specific search directory X" for "['/usr/X11R6/lib64/libX11.a']") Directory does not exist: /usr/X11R5 (while checking "Package specific search directory X" for "['/usr/X11R5/lib/libX11.a']") Directory does not exist: /usr/X11R5 (while checking "Package specific search directory X" for "['/usr/X11R5/lib64/libX11.a']") Directory does not exist: /usr/X11R4 (while checking "Package specific search directory X" for "['/usr/X11R4/lib/libX11.a']") Directory does not exist: /usr/X11R4 (while checking "Package specific search directory X" for "['/usr/X11R4/lib64/libX11.a']") Directory does not exist: /usr/local/X11 (while checking "Package specific search directory X" for "['/usr/local/X11/lib/libX11.a']") Directory does not exist: /usr/local/X11 (while checking "Package specific search directory X" for "['/usr/local/X11/lib64/libX11.a']") Directory does not exist: /usr/local/X11R6 (while checking "Package specific search directory X" for "['/usr/local/X11R6/lib/libX11.a']") Directory does not exist: /usr/local/X11R6 (while checking "Package specific search directory X" for "['/usr/local/X11R6/lib64/libX11.a']") Directory does not exist: /usr/local/X11R5 (while checking "Package specific search directory X" for "['/usr/local/X11R5/lib/libX11.a']") Directory does not exist: /usr/local/X11R5 (while checking "Package specific search directory X" for "['/usr/local/X11R5/lib64/libX11.a']") Directory does not exist: /usr/local/X11R4 (while checking "Package specific search directory X" for "['/usr/local/X11R4/lib/libX11.a']") Directory does not exist: /usr/local/X11R4 (while checking "Package specific search directory X" for "['/usr/local/X11R4/lib64/libX11.a']") Directory does not exist: /usr/X386 (while checking "Package specific search directory X" for "['/usr/X386/lib/libX11.a']") Directory does not exist: /usr/X386 (while checking "Package specific search directory X" for "['/usr/X386/lib64/libX11.a']") Directory does not exist: /usr/x386 (while checking "Package specific search directory X" for "['/usr/x386/lib/libX11.a']") Directory does not exist: /usr/x386 (while checking "Package specific search directory X" for "['/usr/x386/lib64/libX11.a']") Directory does not exist: /usr/XFree86/X11 (while checking "Package specific search directory X" for "['/usr/XFree86/X11/lib/libX11.a']") Directory does not exist: /usr/XFree86/X11 (while checking "Package specific search directory X" for "['/usr/XFree86/X11/lib64/libX11.a']") Checking for library in Package specific search directory X: ['/usr/local/lib/libX11.a'] Contents: ['bin', 'etc', 'lib'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib/libX11.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lX11 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory X: ['/usr/local/lib64/libX11.a'] Contents: ['bin', 'etc', 'lib'] ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['/usr/local/lib64/libX11.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } int main() { _check_XSetWMName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lX11 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/lib/gcc/x86_64-pc-cygwin/4.8.3/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status Popping language C Directory does not exist: /usr/local/x11r5 (while checking "Package specific search directory X" for "['/usr/local/x11r5/lib/libX11.a']") Directory does not exist: /usr/local/x11r5 (while checking "Package specific search directory X" for "['/usr/local/x11r5/lib64/libX11.a']") Directory does not exist: /usr/lpp/Xamples (while checking "Package specific search directory X" for "['/usr/lpp/Xamples/lib/libX11.a']") Directory does not exist: /usr/lpp/Xamples (while checking "Package specific search directory X" for "['/usr/lpp/Xamples/lib64/libX11.a']") Directory does not exist: /usr/openwin (while checking "Package specific search directory X" for "['/usr/openwin/lib/libX11.a']") Directory does not exist: /usr/openwin (while checking "Package specific search directory X" for "['/usr/openwin/lib64/libX11.a']") Directory does not exist: /usr/openwin/share (while checking "Package specific search directory X" for "['/usr/openwin/share/lib/libX11.a']") Directory does not exist: /usr/openwin/share (while checking "Package specific search directory X" for "['/usr/openwin/share/lib64/libX11.a']") ================================================================================ TEST checkSharedLibrary from PETSc.packages.X(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from PETSc.packages.X(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Triangle(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Triangle(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.afterimage(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.afterimage(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Checking for program /usr/local/bin/cmake...not found Checking for program /usr/bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/amd64/cmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v4.0.30319/cmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework64/v3.5/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/x64/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x64/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/x64/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/x64/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/CommonExtensions/Microsoft/TestWindow/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/F#/3.0/Framework/v4.0/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/IDE/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/BIN/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Common7/Tools/cmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v4.0.30319/cmake...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v3.5/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/VC/VCPackages/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/HTML Help Workshop/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 11.0/Team Tools/Performance Tools/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/bin/x86/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v8.0A/bin/NETFX 4.0 Tools/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SDKs/Windows/v7.0A/Bin/cmake...not found Checking for program /cygdrive/c/MSMPI/Bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common/cmake...not found Checking for program /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/Microsoft Shared/Windows Live/cmake...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.0/bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/ipp/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/ipp/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mkl/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mkl/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/mpirt/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/mpirt/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/intel64/compiler/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/redist/ia32/compiler/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/ComposerXE-2011/compiler/lib/cmake...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Bin/cmake...not found Checking for program /cygdrive/c/PROGRA~2/Borland/CBUILD~1/Projects/Bpl/cmake...not found Checking for program /cygdrive/c/Windows/system32/cmake...not found Checking for program /cygdrive/c/Windows/cmake...not found Checking for program /cygdrive/c/Windows/System32/Wbem/cmake...not found Checking for program /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Live/Shared/cmake...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/runtime/win64/cmake...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2014a/bin/cmake...not found Checking for program /cygdrive/c/Program Files/TortoiseSVN/bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Windows Kits/8.0/Windows Performance Toolkit/cmake...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/110/Tools/Binn/cmake...not found Checking for program /home/semih/cmake...not found Checking for program /home/semih/petsc/bin/win32fe/cmake...not found ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.metis(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.metis(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.parmetis(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.parmetis(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.Zoltan(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.Zoltan(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fblaslapack(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.f2cblaslapack(/home/semih/petsc/config/BuildSystem/config/package.py:512) TESTING: configureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:512) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional f2cblaslapack Looking for F2CBLASLAPACK in directory starting with f2cblaslapack Found a copy of F2CBLASLAPACK in f2cblaslapack-3.4.2.q1 Pushing language C Popping language C Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.setCompilers/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -O0 /tmp/petsc-DZOa4u/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Do not need to rebuild f2cblaslapack Not checking for library in Download F2CBLASLAPACK: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/home/semih/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download F2CBLASLAPACK: ['/home/semih/petsc/arch-mswin-c-debug/include'] ================================================================================ TEST checkSharedLibrary from config.packages.f2cblaslapack(/home/semih/petsc/config/BuildSystem/config/package.py:566) TESTING: checkSharedLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:566) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:318) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:318) ================================================================================ Checking for a functional BLAS and LAPACK in f2cblaslapack ================================================================================ TEST checkLib from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:99) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:99) Checking for BLAS and LAPACK symbols Checking for functions [ddot] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `ddot' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `ddot' collect2: error: ld returned 1 exit status Popping language C Checking for no name mangling on BLAS/LAPACK Checking for functions [ddot] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot(); static void _check_ddot() { ddot(); } int main() { _check_ddot();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_ddot': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `ddot' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `ddot' collect2: error: ld returned 1 exit status Popping language C Checking for underscore name mangling on BLAS/LAPACK Checking for functions [ddot_] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBF2CBLAS" to "1" Popping language C Checking for functions [dgetrs_] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a'] ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBF2CLAPACK" to "1" Popping language C Checking for functions [dgeev_] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a'] ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBF2CLAPACK" to "1" Popping language C Found underscore name mangling on BLAS/LAPACK Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:437) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:437) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:377) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:377) Check for the IBM ESSL library Checking for functions [iessl] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_iessl': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `iessl' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `iessl' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:389) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:389) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_ipessl': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `ipessl' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `ipessl' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMKL from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:383) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:383) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-DZOa4u/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /tmp/petsc-DZOa4u/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' /tmp/petsc-DZOa4u/config.libraries/conftest.c:5:(.text+0x9): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `mkl_set_num_threads' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:402) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:402) Check for missing LAPACK routines Checking for functions [dtrsen_ dgerfs_ dgges_ dtgsen_ dgesvd_ dgetrf_ dgetrs_ dgeev_ dgelss_ dsyev_ dsyevx_ dsygv_ dsygvx_ dpotrf_ dpotrs_ dstebz_ dpttrf_ dpttrs_ dstein_ dorgqr_ dgeqrf_ dgesv_ dhseqr_ dsteqr_] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a'] ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dgesvd_(); static void _check_dgesvd_() { dgesvd_(); } char dgetrf_(); static void _check_dgetrf_() { dgetrf_(); } char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } char dgeev_(); static void _check_dgeev_() { dgeev_(); } char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dsyev_(); static void _check_dsyev_() { dsyev_(); } char dsyevx_(); static void _check_dsyevx_() { dsyevx_(); } char dsygv_(); static void _check_dsygv_() { dsygv_(); } char dsygvx_(); static void _check_dsygvx_() { dsygvx_(); } char dpotrf_(); static void _check_dpotrf_() { dpotrf_(); } char dpotrs_(); static void _check_dpotrs_() { dpotrs_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dpttrf_(); static void _check_dpttrf_() { dpttrf_(); } char dpttrs_(); static void _check_dpttrs_() { dpttrs_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dgeqrf_(); static void _check_dgeqrf_() { dgeqrf_(); } char dgesv_(); static void _check_dgesv_() { dgesv_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } int main() { _check_dtrsen_(); _check_dgerfs_(); _check_dgges_(); _check_dtgsen_(); _check_dgesvd_(); _check_dgetrf_(); _check_dgetrs_(); _check_dgeev_(); _check_dgelss_(); _check_dsyev_(); _check_dsyevx_(); _check_dsygv_(); _check_dsygvx_(); _check_dpotrf_(); _check_dpotrs_(); _check_dstebz_(); _check_dpttrf_(); _check_dpttrs_(); _check_dstein_(); _check_dorgqr_(); _check_dgeqrf_(); _check_dgesv_(); _check_dhseqr_(); _check_dsteqr_();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBF2CLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/home/semih/petsc/config/BuildSystem/config/packages/BlasLapack.py:415) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:415) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [lsame_] in library ['/home/semih/petsc/arch-mswin-c-debug/lib/libf2clapack.a', '/home/semih/petsc/arch-mswin-c-debug/lib/libf2cblas.a'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBF2CLAPACK" to "1" Defined "HAVE_LIBF2CBLAS" to "1" Popping language C ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU_DIST(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuperLU(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.SuperLU(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.sundials(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.sundials(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.SuiteSparse(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.SuiteSparse(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.spai(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.spai(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.PaStiX(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.PaStiX(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.pARMS(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.pARMS(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.oski(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.oski(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.scalapack(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.scalapack(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.MUMPS(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.MUMPS(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.ml(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.ml(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mkl_pardiso(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.mkl_pardiso(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.hypre(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.hypre(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.elemental(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.elemental(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.clique(/home/semih/petsc/config/BuildSystem/config/package.py:570) TESTING: alternateConfigureLibrary from PETSc.packages.clique(config/BuildSystem/config/package.py:570) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.utilities.Regression(/home/semih/petsc/config/PETSc/utilities/Regression.py:33) TESTING: configureRegression from PETSc.utilities.Regression(config/PETSc/utilities/Regression.py:33) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C PCBDDC F2CBLASLAPACK Cxx C_NoComplex" ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:756) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:756) All intermediate test results are stored in /tmp/petsc-DZOa4u/PETSc.Configure Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: In file included from /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:3:0: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:4:15: error: ‘NULL’ undeclared here (not in a function) void *ptr = RTLD_DEFAULT; ^ Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:606) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:606) Sees if there are any prefetch functions supported Executing: uname -s stdout: CYGWIN_NT-6.1 Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language C ================================================================================ TEST configureUnused from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:667) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:667) Sees if __attribute((unused)) is supported Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:7:5: warning: unused variable ‘j’ [-Wunused-variable] int j = myfunc(&i); ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "UNUSED" to "__attribute((unused))" Popping language C ================================================================================ TEST configureDeprecated from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:685) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:685) Check if __attribute((deprecated)) is supported Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:3:38: warning: ‘myfunc’ defined but not used [-Wunused-function] __attribute((deprecated)) static int myfunc(void) { return 1;} ^ Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language C ================================================================================ TEST configureIsatty from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:679) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:679) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:705) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:705) Sees if the __builtin_expect directive is supported Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language C ================================================================================ TEST configureFunctionName from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:712) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:712) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:734) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:734) Determine what to use for uintptr_t Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:6:18: warning: unused variable ‘i’ [-Wunused-variable] int x; uintptr_t i = (uintptr_t)&x;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language C ================================================================================ TEST configureSolaris from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:761) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:761) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:774) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:774) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:780) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:780) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o Kernel32.lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: Kernel32.lib: No such file or directory Popping language C Checking for functions [GetComputerName] in library ['kernel32'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBKERNEL32" to "1" Popping language C Adding ['kernel32'] to LIBS Defined "HAVE_WINDOWS_H" to "1" Defined "HAVE_GETCOMPUTERNAME" to "1" Defined "USE_WINDOWS_GRAPHICS" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { LoadLibrary(0); return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LOADLIBRARY" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { GetProcAddress(0,0); return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_GETPROCADDRESS" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { FreeLibrary(0); return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_FREELIBRARY" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { GetLastError(); return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_GETLASTERROR" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { SetLastError(0); return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_SETLASTERROR" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { QueryPerformanceCounter(0); ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "USE_MICROSOFT_TIME" to "1" Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o Advapi32.lib -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: Advapi32.lib: No such file or directory Popping language C Checking for functions [GetUserName] in library ['advapi32'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBADVAPI32" to "1" Popping language C Adding ['advapi32'] to LIBS Defined "HAVE_GET_USER_NAME" to "1" Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o User32.lib -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: User32.lib: No such file or directory Popping language C Checking for functions [GetDC] in library ['user32'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -luser32 -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBUSER32" to "1" Popping language C Adding ['user32'] to LIBS Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o Gdi32.lib -luser32 -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Possible ERROR while running linker: exit code 256 stderr: gcc: error: Gdi32.lib: No such file or directory Popping language C Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Pushing language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.libraries/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/config.libraries/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.libraries/conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_LIBGDI32" to "1" Popping language C Adding ['gdi32'] to LIBS Checking for type: int32_t Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/config.types/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/config.types/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:6:7: warning: unused variable ‘u’ [-Wunused-variable] uid_t u; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:8:5: warning: unused variable ‘a’ [-Wunused-variable] int a=R_OK; ^ Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:7:7: warning: unused variable ‘b’ [-Wunused-variable] DWORD b=a.u.HighPart; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Defined "HAVE_LARGE_INTEGER_U" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:7:5: warning: unused variable ‘flags’ [-Wunused-variable] int flags = O_BINARY;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "HAVE_O_BINARY" to "1" Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/home/semih/petsc"" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:850) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:850) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: CYGWIN_NT-6.1 ================================================================================ TEST configureDefaultArch from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:866) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:866) ================================================================================ TEST configureScript from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:883) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:883) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:920) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:920) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['-@echo "Now to check if the libraries are working do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:934) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:934) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:939) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:939) ================================================================================ TEST configureAtoll from PETSc.Configure(/home/semih/petsc/config/PETSc/Configure.py:662) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:662) Checks if atoll exists Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c: In function ‘main’: /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c:7:6: warning: unused variable ‘v’ [-Wunused-variable] long v = atoll("25"); ^ Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.exe -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -lgdi32 -luser32 -ladvapi32 -lkernel32 -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -L/usr/x86_64-pc-cygwin/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl Defined "HAVE_ATOLL" to "1" Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 " Popping language C Pushing language Cxx Defined make macro "CXX_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 " Popping language Cxx Defined make macro "CPP_FLAGS" to " " Pushing language C Defined make macro "PCC" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc" Defined make macro "PCC_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 " Popping language C Defined make macro "CC_SUFFIX" to "o" Pushing language C Defined make macro "PCC_LINKER" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc" Defined make macro "PCC_LINKER_FLAGS" to " -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0" Popping language C Defined make macro "CC_LINKER_SUFFIX" to "" Defined make macro "FC" to "" Pushing language C Defined make macro "SL_LINKER" to "/home/semih/petsc/arch-mswin-c-debug/bin/mpicc" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language C Defined make macro "SL_LINKER_SUFFIX" to "" Defined "SLSUFFIX" to """" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -c -o /tmp/petsc-DZOa4u/PETSc.Configure/conftest.o -I/tmp/petsc-DZOa4u/config.headers -I/tmp/petsc-DZOa4u/PETSc.utilities.cacheDetails -I/tmp/petsc-DZOa4u/PETSc.utilities.featureTestMacros -I/tmp/petsc-DZOa4u/config.functions -I/tmp/petsc-DZOa4u/PETSc.utilities.missing -I/tmp/petsc-DZOa4u/config.compilers -I/tmp/petsc-DZOa4u/config.atomics -I/tmp/petsc-DZOa4u/config.packages.MPI -I/tmp/petsc-DZOa4u/PETSc.utilities.scalarTypes -I/tmp/petsc-DZOa4u/config.setCompilers -I/tmp/petsc-DZOa4u/PETSc.packages.pthread -I/tmp/petsc-DZOa4u/config.types -I/tmp/petsc-DZOa4u/config.libraries -I/tmp/petsc-DZOa4u/PETSc.Configure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 /tmp/petsc-DZOa4u/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -lf2cblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_F2CBLASLAPACK" to "1" Defined make macro "F2CBLASLAPACK_LIB" to "" Defined make macro "F2CBLASLAPACK_INCLUDE" to "" Defined "HAVE_C2HTML" to "1" Defined make macro "C2HTML_LIB" to "" Defined make macro "C2HTML_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "-lpthread" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_PCBDDC" to "1" Defined make macro "PCBDDC_LIB" to "" Defined make macro "PCBDDC_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/home/semih/petsc/arch-mswin-c-debug/include" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/home/semih/petsc/arch-mswin-c-debug/lib -lpetsc -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -lf2cblas -lpthread -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -lmpichcxx -lstdc++ -lgdi32 -luser32 -ladvapi32 -lkernel32 -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -lf2cblas -lpthread -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -lmpichcxx -lstdc++ -lgdi32 -luser32 -ladvapi32 -lkernel32 -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/home/semih/petsc/include -I/home/semih/petsc/arch-mswin-c-debug/include" Defined make macro "DESTDIR" to "/home/semih/petsc/arch-mswin-c-debug" Defined "LIB_DIR" to ""/home/semih/petsc/arch-mswin-c-debug/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-cc=gcc --with-cxx=g++ --with-fc=0 --download-f2cblaslapack --download-mpich --with-pcbddc --useThreads=0" Pushing language C Popping language C Pushing language C Popping language C Skipping cmakeboot due to old python version: sys.version_info(major=2, minor=7, micro=8, releaselevel='final', serial=0) Pushing language C Popping language C ================================================================================ ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.petsc4py(/home/semih/petsc/config/PETSc/packages/petsc4py.py:72) TESTING: alternateConfigureLibrary from PETSc.packages.petsc4py(config/PETSc/packages/petsc4py.py:72) Defined make rule "petsc4py" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from PETSc.packages.mpi4py(/home/semih/petsc/config/PETSc/packages/mpi4py.py:56) TESTING: alternateConfigureLibrary from PETSc.packages.mpi4py(config/PETSc/packages/mpi4py.py:56) Defined make rule "mpi4py" with dependencies "" and code [] **** arch-mswin-c-debug/conf/petscvariables **** MPICXX_SHOW = g++ -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -lmpichcxx -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread C_DEPFLAGS = -MMD -MP MPICC_SHOW = gcc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 -I/home/semih/petsc/arch-mswin-c-debug/include -L/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lpmpich -lmpich -lopa -lmpl -lpthread AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP FAST_AR_FLAGS = Scq PETSC_LANGUAGE = CONLY SOWING_LIB = LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = /home/semih/petsc/arch-mswin-c-debug/bin/mpicc CC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 PETSC_LIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc FC = PETSC_SNES_LIB = ${PETSC_WITH_EXTERNAL_LIB} BLASLAPACK_LIB = -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -lf2cblas PETSC_MAT_LIB = ${PETSC_WITH_EXTERNAL_LIB} PCC = /home/semih/petsc/arch-mswin-c-debug/bin/mpicc SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} SHLIBS = libpetsc F2CBLASLAPACK_LIB = MPI_LIB = C2HTML_LIB = SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} CC_SUFFIX = o PCBDDC_LIB = C2HTML_INCLUDE = CONFIGURE_OPTIONS = --with-cc=gcc --with-cxx=g++ --with-fc=0 --download-f2cblaslapack --download-mpich --with-pcbddc --useThreads=0 PETSC_CHARACTERISTIC_LIB = ${PETSC_WITH_EXTERNAL_LIB} PTHREAD_LIB = -lpthread PETSC_SCALAR = real PCBDDC_INCLUDE = CPP_FLAGS = PETSC_KSP_LIB_BASIC = -lpetsc PETSC_KSP_LIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -lf2cblas -lpthread -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -lmpichcxx -lstdc++ -lgdi32 -luser32 -ladvapi32 -lkernel32 -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl CXX_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 PCC_LINKER_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 PETSC_CONTRIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/home/semih/petsc/include -I/home/semih/petsc/arch-mswin-c-debug/include PCC_LINKER = /home/semih/petsc/arch-mswin-c-debug/bin/mpicc PETSC_SYS_LIB = ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 PTHREAD_INCLUDE = PETSC_TS_LIB = ${PETSC_WITH_EXTERNAL_LIB} PETSC_TAO_LIB_BASIC = -lpetsc BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = SL_LINKER_SUFFIX = PETSC_DM_LIB = ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /home/semih/petsc/arch-mswin-c-debug F2CBLASLAPACK_INCLUDE = PETSC_WITH_EXTERNAL_LIB = -L/home/semih/petsc/arch-mswin-c-debug/lib -lpetsc -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -lf2cblas -lpthread -L/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -L/usr/x86_64-pc-cygwin/lib -lmpichcxx -lstdc++ -lgdi32 -luser32 -ladvapi32 -lkernel32 -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lgcc_s -ladvapi32 -lshell32 -luser32 -ldl SOWING_INCLUDE = PETSC_TAO_LIB = ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = -I/home/semih/petsc/arch-mswin-c-debug/include SHELL = /usr/bin/sh GREP = /usr/bin/grep MV = /usr/bin/mv PYTHON = /usr/bin/python MKDIR = /usr/bin/mkdir -p SEDINPLACE = /usr/bin/sed -i SED = /usr/bin/sed DIFF = /usr/bin/diff -w GZIP = /usr/bin/gzip RM = /usr/bin/rm -f CP = /usr/bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CC = /home/semih/petsc/arch-mswin-c-debug/bin/mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = /usr/bin/ar CXX = /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx AR = /usr/bin/ar CXXCPP = /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -E CPP = /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -E AR_LIB_SUFFIX = a LD_SHARED = /usr/bin/ar DIR = /home/semih/petsc OMAKE = /usr/bin/make --no-print-directory MAKE_IS_GNUMAKE = 1 MAKE = /usr/bin/make MAKE_NP = 7 OMAKE_PRINTDIR = /usr/bin/make --print-directory GIT = git MPIEXEC = /home/semih/petsc/arch-mswin-c-debug/bin/mpiexec DSYMUTIL = true TEST_RUNS = C PCBDDC F2CBLASLAPACK Cxx C_NoComplex BUILDSHAREDLIB = no C2HTML = /home/semih/petsc/arch-mswin-c-debug/bin/c2html BIB2HTML = /home/semih/petsc/arch-mswin-c-debug/bin/bib2html MAPNAMES = /home/semih/petsc/arch-mswin-c-debug/bin/mapnames BFORT = /home/semih/petsc/arch-mswin-c-debug/bin/bfort DOCTEXT = /home/semih/petsc/arch-mswin-c-debug/bin/doctext **** arch-mswin-c-debug/conf/petscrules **** shared_install: -@echo "Now to check if the libraries are working do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" -@echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} .F.o: -@echo "Your system was not configured for Fortran use" -@echo " Check configure.log under the checkFortranCompiler test for the specific failure" -@echo " You can reconfigure using --with-fc= to enable Fortran" shared_arch: mpi4py: petsc4py: **** arch-mswin-c-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_USE_WINDOWS_GRAPHICS #define PETSC_USE_WINDOWS_GRAPHICS 1 #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_HAVE_WINDOWS_H #define PETSC_HAVE_WINDOWS_H 1 #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_SETLASTERROR #define PETSC_HAVE_SETLASTERROR 1 #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_DIR #define PETSC_DIR "/home/semih/petsc" #endif #ifndef PETSC_HAVE_GETPROCADDRESS #define PETSC_HAVE_GETPROCADDRESS 1 #endif #ifndef PETSC_HAVE_F2CBLASLAPACK #define PETSC_HAVE_F2CBLASLAPACK 1 #endif #ifndef PETSC_HAVE_LARGE_INTEGER_U #define PETSC_HAVE_LARGE_INTEGER_U 1 #endif #ifndef PETSC_USE_ISATTY #define PETSC_USE_ISATTY 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_HAVE_FREELIBRARY #define PETSC_HAVE_FREELIBRARY 1 #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_HAVE_C2HTML #define PETSC_HAVE_C2HTML 1 #endif #ifndef PETSC_HAVE_PCBDDC #define PETSC_HAVE_PCBDDC 1 #endif #ifndef PETSC_HAVE_GETCOMPUTERNAME #define PETSC_HAVE_GETCOMPUTERNAME 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_HAVE_O_BINARY #define PETSC_HAVE_O_BINARY 1 #endif #ifndef PETSC_USE_MICROSOFT_TIME #define PETSC_USE_MICROSOFT_TIME 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_HAVE_LOADLIBRARY #define PETSC_HAVE_LOADLIBRARY 1 #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_HAVE_GETLASTERROR #define PETSC_HAVE_GETLASTERROR 1 #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_GET_USER_NAME #define PETSC_HAVE_GET_USER_NAME 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/home/semih/petsc/arch-mswin-c-debug/lib" #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_MACHINE_ENDIAN_H #define PETSC_HAVE_MACHINE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_WS2TCPIP_H #define PETSC_HAVE_WS2TCPIP_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_WINDOWSX_H #define PETSC_HAVE_WINDOWSX_H 1 #endif #ifndef PETSC_HAVE_IEEEFP_H #define PETSC_HAVE_IEEEFP_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_IO_H #define PETSC_HAVE_IO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBF2CBLAS #define PETSC_HAVE_LIBF2CBLAS 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBPTHREAD #define PETSC_HAVE_LIBPTHREAD 1 #endif #ifndef PETSC_HAVE_LIBF2CLAPACK #define PETSC_HAVE_LIBF2CLAPACK 1 #endif #ifndef PETSC_HAVE_LIBADVAPI32 #define PETSC_HAVE_LIBADVAPI32 1 #endif #ifndef PETSC_HAVE_LIBGDI32 #define PETSC_HAVE_LIBGDI32 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBKERNEL32 #define PETSC_HAVE_LIBKERNEL32 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_LIBUSER32 #define PETSC_HAVE_LIBUSER32 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-mswin-c-debug" #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_INT64_T #define PETSC_HAVE_MPI_INT64_T 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_LONG_DOUBLE #define PETSC_HAVE_MPI_LONG_DOUBLE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK #define PETSC_HAVE_MPICH_CH3_SOCK 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS #define PETSC_HAVE_MPICH_CH3_SOCK_FIXED_NBC_PROGRESS 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_C_DOUBLE_COMPLEX #define PETSC_HAVE_MPI_C_DOUBLE_COMPLEX 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 32 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 2 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2014-08-24 10:36:47 +0300" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.5-42-g51cb09f" #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #endif **** arch-mswin-c-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- PETSc: Build : Set default architecture to arch-mswin-c-debug in conf/petscvariables File creation : Created arch-mswin-c-debug/conf/reconfigure-arch-mswin-c-debug.py for automatic reconfiguration Framework: File creation : Created makefile configure header arch-mswin-c-debug/conf/petscvariables File creation : Created makefile configure header arch-mswin-c-debug/conf/petscvariables File creation : Created configure header arch-mswin-c-debug/include/petscconf.h File creation : Created C specific configure header arch-mswin-c-debug/include/petscfix.h Pushing language C Popping language C Pushing language Cxx Popping language Cxx Compilers: C Compiler: /home/semih/petsc/arch-mswin-c-debug/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -O0 C++ Compiler: /home/semih/petsc/arch-mswin-c-debug/bin/mpicxx -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g -O0 Linkers: Static linker: /usr/bin/ar cr Dynamic linker: /usr/bin/ar make: MPI: Includes: -I/home/semih/petsc/arch-mswin-c-debug/include BLAS/LAPACK: -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2clapack -Wl,-rpath,/home/semih/petsc/arch-mswin-c-debug/lib -L/home/semih/petsc/arch-mswin-c-debug/lib -lf2cblas f2cblaslapack: c2html: pthread: Library: -lpthread Arch: pcbddc: sowing: PETSc: PETSC_ARCH: arch-mswin-c-debug PETSC_DIR: /home/semih/petsc Clanguage: C Scalar type: real Precision: double Memory alignment: 16 shared libraries: disabled xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/home/semih/petsc PETSC_ARCH=arch-mswin-c-debug all xxx=========================================================================xxx ================================================================================ Finishing Configure Run at Sat Sep 6 12:01:09 2014 ================================================================================