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<div class="moz-cite-prefix">On 08/29/2014 08:08 AM, Matthew Knepley
wrote:<br>
</div>
<blockquote
cite="mid:CAMYG4G=qHySHC4A=da6zBBUc6fsUXqWhrh1F-rW_wfHceDoKyQ@mail.gmail.com"
type="cite">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">On Fri, Aug 29, 2014 at 8:35 AM,
Christophe Ortiz <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:christophe.ortiz@ciemat.es" target="_blank">christophe.ortiz@ciemat.es</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div dir="ltr">Sorry about that.
<div><br>
</div>
<div>Please find in attachment the configure.log file.
Hope it will help you find the error.</div>
</div>
</blockquote>
<div><br>
</div>
<div>Here is the problem:</div>
<div><br>
</div>
<div>
<div>Possible ERROR while running preprocessor: nvcc
warning : The 'compute_10' and 'sm_10' architectures are
deprecated, and may be removed in a future release.</div>
<div>error message = {nvcc warning : The 'compute_10' and
'sm_10' architectures are deprecated, and may be removed
in a future release.</div>
<div>}</div>
</div>
<div><br>
</div>
<div>meaning the nvcc compiler does not "work" as provided.
Here is a workaround:</div>
<div><br>
</div>
<div> --with-cudac='nvcc --arch=sm_35'</div>
<div><br>
</div>
<div>Dominic, I think that thrust.py should depend on
cuda.py. Do you know why it does not?</div>
</div>
</div>
</div>
</blockquote>
In principle you are right, thrust.py should depend on cuda.py.<br>
<br>
However, in my opinion, thrust.py should go away as a separate
package altogether. Thrust is shipped as part of any recent version
of the cuda toolkit (I forget since which version, Paul might know)
and it's always installed in $CUDA_TOOLKIT_ROOT/include/thrust. Thus
we can automatically deduct the thrust location from the cuda
location. Thrust should be considered part of cuda.<br>
<br>
Cheers,<br>
Dominic<br>
<blockquote
cite="mid:CAMYG4G=qHySHC4A=da6zBBUc6fsUXqWhrh1F-rW_wfHceDoKyQ@mail.gmail.com"
type="cite">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">
<div><br>
</div>
<div> Thanks,</div>
<div>
<br>
</div>
<div> Matt</div>
<div><br>
</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div dir="ltr">
<div>Christophe</div>
</div>
<div class="gmail_extra"><br clear="all">
<div>CIEMAT<br>
Laboratorio Nacional de Fusión por Confinamiento
Magnético<br>
Unidad de Materiales
<div>Edificio 2 - Planta 0 - Despacho 28m<br>
Avenida Complutense 40,<br>
28040 Madrid, Spain<br>
Tel: <a moz-do-not-send="true"
href="tel:%2B34%2091496%202582"
value="+34914962582" target="_blank">+34 91496
2582</a><br>
Fax: <a moz-do-not-send="true"
href="tel:%2B34%2091346%206442"
value="+34913466442" target="_blank">+34 91346
6442</a><br>
<br>
--<br>
<span
style="color:rgb(0,128,0);font-family:Webdings;font-size:x-large">Q</span>
<div><span
style="white-space:pre-wrap;background-color:rgb(255,255,255)">Por
favor, piense en el medio ambiente antes de
imprimir este mensaje.</span>
<div>
<span style="white-space:pre-wrap">Please
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<div class="gmail_quote">On Fri, Aug 29, 2014 at 3:28
PM, Matthew Knepley <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px
0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div dir="ltr">Always attach configure.log or we
cannot see what went wrong.
<div><br>
</div>
<div> Matt</div>
</div>
<div class="gmail_extra">
<div>
<div><br>
<br>
<div class="gmail_quote">On Fri, Aug 29, 2014
at 2:35 AM, Christophe Ortiz <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:christophe.ortiz@ciemat.es"
target="_blank">christophe.ortiz@ciemat.es</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">
<div>Hi Dominic and Paul,</div>
<div><br>
</div>
<div>Thanks for your answers.
Unfortunately, it did not work.
Same error message related to the
thrust directory:</div>
<div><br>
</div>
<div><br>
</div>
<div>
<div>./configure --with-x=1
--with-mpi=0 --with-cc=icc
--with-cxx=icpc
--with-clanguage=cxx
--with-fc=ifort --with-cuda=1
--with-cuda-dir=/usr/local/cuda-6.0
--with-cuda-arch=sm_35
--with-thrust=1
--with-thrust-dir=/usr/local/cuda-6.0/include
--with-cusp=1
--with-cusp-dir=/usr/local/cuda-6.0/include
--with-debugging=1
--with-scalar-type=real
--with-precision=double
--download-fblaslapack</div>
<div>===============================================================================</div>
<div> Configuring
PETSc to compile on your system
</div>
<div>===============================================================================</div>
<div>TESTING: checkInclude from
config.headers(config/BuildSystem/config/headers.py:86)
*******************************************************************************</div>
<div> UNABLE to CONFIGURE
with GIVEN OPTIONS (see
configure.log for details):</div>
<div>-------------------------------------------------------------------------------</div>
<div>--with-thrust-dir=/usr/local/cuda-6.0/include
did not work</div>
<div>*******************************************************************************</div>
</div>
<div><br>
</div>
<div><br>
</div>
<div>I do not see what else to
do...I have a standard CUDA
installation that came with
thrust.</div>
<div>I am using ubuntu 12.04, I do
not know if that could help.</div>
<div>I tried with PETSc 3.4.1 and
3.5.1. Same problem.</div>
<div><br>
</div>
<div>Christophe</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div> </div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">------------------------------<br>
<br>
Message: 3<br>
Date: Thu, 28 Aug 2014 08:38:12
-0600<br>
From: Dominic Meiser <<a
moz-do-not-send="true"
href="mailto:dmeiser@txcorp.com"
target="_blank">dmeiser@txcorp.com</a>><br>
To: <a moz-do-not-send="true"
href="mailto:petsc-users@mcs.anl.gov"
target="_blank">petsc-users@mcs.anl.gov</a><br>
Subject: Re: [petsc-users] Unable
to configure PETSc with CUDA:<br>
Problem with thrust
directory<br>
Message-ID: <<a
moz-do-not-send="true"
href="mailto:53FF3ED4.1090002@txcorp.com"
target="_blank">53FF3ED4.1090002@txcorp.com</a>><br>
Content-Type: text/plain;
charset=UTF-8; format=flowed<br>
<br>
Can you try configuring with<br>
<br>
--with-thrust-dir=/usr/local/cuda-6.0/include<br>
<br>
I.e. omit the 'thrust' at the end
of the path. Probably you'll need
the<br>
same fix with cusp:<br>
<br>
--with-cusp-dir=/usr/local/cuda-6.0/include<br>
<br>
Cheers,<br>
Dominic<br>
</blockquote>
<div><br>
</div>
<div> </div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><br>
On 08/28/2014 08:13 AM, Christophe
Ortiz wrote:<br>
> Hi all,<br>
><br>
> I have implemented a problem
of coupled diffusion equations in
1D<br>
> using PETSc. I was able to
configure PETSC with and without
MPI. The<br>
> code runs well in both cases.<br>
><br>
> Now I would like to test CUDA
but I am unable to configure it. I
get<br>
> an error message related to
thrust directory.<br>
><br>
> The options I use to
configure are the following:<br>
><br>
> --with-x=1 --with-mpi=0
--with-cc=icc --with-cxx=icpc<br>
> --with-clanguage=cxx
--with-fc=ifort --with-cuda=1<br>
>
--with-cuda-dir=/usr/local/cuda-6.0
--with-cuda-arch=sm_35<br>
>
--with-cudac=/usr/local/cuda/bin/nvcc
--with-thrust=1<br>
>
--with-thrust-dir=/usr/local/cuda-6.0/include/thrust
--with-cusp=1<br>
>
--with-cusp-dir=/usr/local/cuda-6.0/include/cusp<br>
> --download-txpetscgpu=1
--with-debugging=1
--with-scalar-type=real<br>
> --with-precision=double
--download-f-blas-lapack<br>
><br>
> The error message I get is:<br>
><br>
>
===============================================================================<br>
> Configuring
PETSc to compile on your system<br>
>
===============================================================================<br>
> TESTING: checkInclude from<br>
>
config.headers(config/BuildSystem/config/headers.py:86)<br>
>
*******************************************************************************<br>
> UNABLE to CONFIGURE
with GIVEN OPTIONS (see
configure.log<br>
> for details):<br>
>
-------------------------------------------------------------------------------<br>
>
--with-thrust-dir=/usr/local/cuda-6.0/include/thrust
did not work<br>
>
*******************************************************************************<br>
><br>
><br>
> Did I miss something ?<br>
> My GPU is a GeForce Titan
Black and I am using CUDA 6.0.<br>
><br>
> Many thanks in advance for
your help.<br>
> Christophe<br>
><br>
<br>
<br>
--<br>
Dominic Meiser<br>
Tech-X Corporation<br>
5621 Arapahoe Avenue<br>
Boulder, CO 80303<br>
USA<br>
Telephone: <a
moz-do-not-send="true"
href="tel:303-996-2036"
value="+13039962036"
target="_blank">303-996-2036</a><br>
Fax: <a moz-do-not-send="true"
href="tel:303-448-7756"
value="+13034487756"
target="_blank">303-448-7756</a><br>
<a moz-do-not-send="true"
href="http://www.txcorp.com"
target="_blank">www.txcorp.com</a><br>
<br>
<br>
<br>
------------------------------<br>
<br>
Message: 4<br>
Date: Thu, 28 Aug 2014 08:30:40
-0600<br>
From: Paul Mullowney <<a
moz-do-not-send="true"
href="mailto:paulmullowney@gmail.com"
target="_blank">paulmullowney@gmail.com</a>><br>
To: Dominic Meiser <<a
moz-do-not-send="true"
href="mailto:dmeiser@txcorp.com"
target="_blank">dmeiser@txcorp.com</a>><br>
Cc: <a moz-do-not-send="true"
href="mailto:petsc-users@mcs.anl.gov"
target="_blank">petsc-users@mcs.anl.gov</a><br>
Subject: Re: [petsc-users] Unable
to configure PETSc with CUDA:<br>
Problem with thrust
directory<br>
Message-ID:<br>
<CAMJ8fwroFUxG-rpbMpaJEw=<a
moz-do-not-send="true"
href="mailto:0aQdyNm9NMxMzsxWVGGPWZqhGCQ@mail.gmail.com"
target="_blank">0aQdyNm9NMxMzsxWVGGPWZqhGCQ@mail.gmail.com</a>><br>
Content-Type: text/plain;
charset="utf-8"<br>
<br>
Also, get rid of
--download-txpetscgpu=1. That
doesn't exist anymore.<br>
-Paul<br>
<br>
<br>
On Thu, Aug 28, 2014 at 8:38 AM,
Dominic Meiser <<a
moz-do-not-send="true"
href="mailto:dmeiser@txcorp.com"
target="_blank">dmeiser@txcorp.com</a>>
wrote:<br>
<br>
> Can you try configuring with<br>
><br>
>
--with-thrust-dir=/usr/local/cuda-6.0/include<br>
><br>
> I.e. omit the 'thrust' at the
end of the path. Probably you'll
need the<br>
> same fix with cusp:<br>
><br>
>
--with-cusp-dir=/usr/local/cuda-6.0/include<br>
><br>
> Cheers,<br>
> Dominic<br>
><br>
><br>
> On 08/28/2014 08:13 AM,
Christophe Ortiz wrote:<br>
><br>
>> Hi all,<br>
>><br>
>> I have implemented a
problem of coupled diffusion
equations in 1D using<br>
>> PETSc. I was able to
configure PETSC with and without
MPI. The code runs<br>
>> well in both cases.<br>
>><br>
>> Now I would like to test
CUDA but I am unable to configure
it. I get an<br>
>> error message related to
thrust directory.<br>
>><br>
>> The options I use to
configure are the following:<br>
>><br>
>> --with-x=1 --with-mpi=0
--with-cc=icc --with-cxx=icpc<br>
>> --with-clanguage=cxx
--with-fc=ifort --with-cuda=1<br>
>>
--with-cuda-dir=/usr/local/cuda-6.0
--with-cuda-arch=sm_35<br>
>>
--with-cudac=/usr/local/cuda/bin/nvcc
--with-thrust=1<br>
>>
--with-thrust-dir=/usr/local/cuda-6.0/include/thrust
--with-cusp=1<br>
>>
--with-cusp-dir=/usr/local/cuda-6.0/include/cusp
--download-txpetscgpu=1<br>
>> --with-debugging=1
--with-scalar-type=real
--with-precision=double<br>
>> --download-f-blas-lapack<br>
>><br>
>> The error message I get
is:<br>
>><br>
>>
============================================================<br>
>> ===================<br>
>> Configuring
PETSc to compile on your system<br>
>>
============================================================<br>
>> ===================<br>
>> TESTING: checkInclude
from config.headers(config/<br>
>>
BuildSystem/config/headers.py:86)
******************************<br>
>>
*************************************************<br>
>> UNABLE to
CONFIGURE with GIVEN OPTIONS
(see configure.log for<br>
>> details):<br>
>>
------------------------------------------------------------<br>
>> -------------------<br>
>>
--with-thrust-dir=/usr/local/cuda-6.0/include/thrust
did not work<br>
>>
************************************************************<br>
>> *******************<br>
>><br>
>><br>
>> Did I miss something ?<br>
>> My GPU is a GeForce Titan
Black and I am using CUDA 6.0.<br>
>><br>
>> Many thanks in advance
for your help.<br>
>> Christophe<br>
>><br>
>><br>
><br>
> --<br>
> Dominic Meiser<br>
> Tech-X Corporation<br>
> 5621 Arapahoe Avenue<br>
> Boulder, CO 80303<br>
> USA<br>
> Telephone: <a
moz-do-not-send="true"
href="tel:303-996-2036"
value="+13039962036"
target="_blank">303-996-2036</a><br>
> Fax: <a
moz-do-not-send="true"
href="tel:303-448-7756"
value="+13034487756"
target="_blank">303-448-7756</a><br>
> <a moz-do-not-send="true"
href="http://www.txcorp.com"
target="_blank">www.txcorp.com</a><br>
><br>
><br>
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<span class=""><font color="#888888">
<div><br>
</div>
</font></span></div>
</div>
<span class=""><font color="#888888"><span><font
color="#888888">-- <br>
What most experimenters take for granted
before they begin their experiments is
infinitely more interesting than any
results to which their experiments lead.<br>
-- Norbert Wiener
</font></span></font></span></div>
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</blockquote>
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<br>
<br clear="all">
<div><br>
</div>
-- <br>
What most experimenters take for granted before they begin
their experiments is infinitely more interesting than any
results to which their experiments lead.<br>
-- Norbert Wiener
</div>
</div>
</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72">--
Dominic Meiser
Tech-X Corporation
5621 Arapahoe Avenue
Boulder, CO 80303
USA
Telephone: 303-996-2036
Fax: 303-448-7756
<a class="moz-txt-link-abbreviated" href="http://www.txcorp.com">www.txcorp.com</a></pre>
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