<div dir="ltr">On Wed, Oct 30, 2013 at 4:48 PM, Maxime Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span> wrote:<br><div class="gmail_extra">
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Le 2013-10-30 17:45, Matthew Knepley a écrit :<br>
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<div dir="ltr">On Wed, Oct 30, 2013 at 4:41 PM, Maxime
Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
wrote:<br>
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<div>Hi,<br>
Here is the attached configure.log file.<br>
<br>
I will try the flag --with-debugging tomorrow.<br>
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Get rid of -O2: CFLAGS="-O2 -xHost -mkl -fPIC -m64"
FFLAGS="-O2 -xHost -mkl -fPIC -m64"
--prefix=/software6/libs/petsc/3.4.3_intel</div>
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I had -O3 earlier. The error was the same. It is overwritten by the
makefile anyway if you look in the details. This is not the source
of the problem.<br></div></blockquote><div><br></div><div>I know, but if you leave it there with you use --with-debugging, it could still cause the problem.</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div class="gmail_quote">--with-dynamic-loading</div>
<div class="gmail_quote">--with-x=0 --with-mpi-compilers=1</div>
<div class="gmail_quote">--with-mpi-dir=/software6/mpi/openmpi/1.6.5_intel</div>
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--known-mpi-shared-libraries=1</div>
<div class="gmail_quote">--with-debugging=no</div>
<div class="gmail_quote">--with-shared-libraries=1</div>
<div class="gmail_quote">--with-blas-lapack-dir=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64</div>
<div class="gmail_quote">Don't need this --with-scalapack=1</div>
<div class="gmail_quote">--with-scalapack-include=/software6/compilers/intel/composer_xe_2013_sp1/include</div>
<div class="gmail_quote">--with-scalapack-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_scalapack_lp64.a</div>
<div class="gmail_quote">Don't need this --with-blacs=1</div>
<div class="gmail_quote">--with-blacs-include=/software6/compilers/intel/composer_xe_2013_sp1/include</div>
<div class="gmail_quote">--with-blacs-lib=/software6/compilers/intel/composer_xe_2013_sp1/lib/intel64/libmkl_blacs_openmpi_lp64.a</div>
<div class="gmail_quote">--download-mumps=yes</div>
<div class="gmail_quote">--download-ptscotch=1</div>
<div class="gmail_quote">--download-superlu=yes</div>
<div class="gmail_quote">--download-superlu_dist=yes</div>
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--download-parmetis=yes</div>
<div class="gmail_quote">--download-metis=yes</div>
<div class="gmail_quote">--download-ml=yes</div>
<div class="gmail_quote">This is deprecated. Use -pc_type gamg
--download-prometheus=yes</div>
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Which part is, download-ml ? or download-hypre ? Again, this is not
the module that fails compiling however.<br></div></blockquote><div><br></div><div>I do not understand the question here. ML is algebraic multigrid, similar to -pc_type gamg. Hypre has a few things in it.</div><div><br>
</div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div bgcolor="#FFFFFF" text="#000000">
Maxime<br>
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<div class="gmail_quote">--download-hypre=yes</div>
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<div class="gmail_quote"> Matt<br>
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<div> Maxime<br>
<br>
Le 2013-10-30 16:49, Matthew Knepley a écrit :<br>
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<div dir="ltr">On Wed, Oct 30, 2013 at 3:39 PM, Maxime
Boissonneault <span dir="ltr"><<a href="mailto:maxime.boissonneault@calculquebec.ca" target="_blank">maxime.boissonneault@calculquebec.ca</a>></span>
wrote:<br>
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<div style="font-family:-moz-fixed;font-size:12px" lang="x-western">Hi, <br>
I am currently trying to compile PETSc
3.4.3 with ICC 14.0 and OpenMPI 1.6.5 and
it fails SuperLU_Dist.<br>
<br>
I am getting the following error : <br>
<br>
68303
/software6/mpi/openmpi/1.6.5_intel/bin/mpicc
-I/software6/mpi/openmpi/1.6.5_intel/include
-I/software6/mpi/openmpi/1.6.5_intel/include
-O2 -xHost -mkl -fPIC -m64 -fPIC -O3
-DAdd_ -DUSE_VENDOR_BLAS -c pdgstrf.c <br>
68304 make[1]: Leaving directory
`/software6/src/petsc-3.4.3-intel-try/externalpackages/SuperLU_DIST_3.3/SRC'<br>
68305 error #13002: unexpected CFE message
argument: e. The staggered cosine
transform may be <br>
68306 warning #13003: message verification
failed for: 556; reverting to internal
message <br>
68307 pdgstrf.c(2672): warning #556: a
value of type "int" cannot be assigned to
an entity of type "MPI_Request" <br>
68308
U_diag_blk_send_req[krow] = 1; /* flag
outstanding Isend */ <br>
68309
^ <br>
68310 <br>
68311 pdgstrf.c(2672): warning #152: Fatal
error: Trigonometric Transform has failed
to release the memory. <br>
68312
U_diag_blk_send_req[krow] = 1; /* flag
outstanding Isend */ <br>
68313
^ <br>
68314 <br>
68315 compilation aborted for pdgstrf.c
(code 1) <br>
68316 make[1]: *** [pdgstrf.o] Error 1 <br>
<br>
Anyone has a clue on to what might be
going on ? </div>
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<div>1) Always send configure.log</div>
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<div>2) It looks like an Intel compiler bug. Try
building with --with-debugging first</div>
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<div> Matt</div>
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<div style="font-family:-moz-fixed;font-size:12px" lang="x-western"><span><font color="#888888"><br>
<div><span>-- <br>
</span>---------------------------------
<br>
Maxime Boissonneault <br>
Analyste de calcul - Calcul Québec,
Université Laval <br>
Ph. D. en physique <br>
<br>
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-- <br>
What most experimenters take for granted
before they begin their experiments is
infinitely more interesting than any results
to which their experiments lead.<br>
-- Norbert Wiener </font></span></div>
<span><font color="#888888"> </font></span></div>
<span><font color="#888888"> </font></span></blockquote>
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<pre cols="72">--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
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-- <br>
What most experimenters take for granted before they begin
their experiments is infinitely more interesting than any
results to which their experiments lead.<br>
-- Norbert Wiener
</font></span></div><span class="HOEnZb"><font color="#888888">
</font></span></div><span class="HOEnZb"><font color="#888888">
</font></span></blockquote><span class="HOEnZb"><font color="#888888">
<br>
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<pre cols="72">--
---------------------------------
Maxime Boissonneault
Analyste de calcul - Calcul Québec, Université Laval
Ph. D. en physique</pre>
</font></span></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br>What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>
-- Norbert Wiener
</div></div>