========================================== See documentation/faq.html and documentation/bugreporting.html for help with installation problems. Please send EVERYTHING printed out below when reporting problems To subscribe to the PETSc announcement list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-announce To subscribe to the PETSc users mailing list, send mail to majordomo@mcs.anl.gov with the message: subscribe petsc-users ========================================== On Thu Oct 24 18:08:31 CDT 2013 on HOU-W7966046513 Machine characteristics: Windows HOU-W7966046513 6.1 SP1 genuineintel Intel64_Family_6_Model_45_Stepping_7 ----------------------------------------- Using PETSc directory: /cygdrive/c/cygwin_cache/petsc-3.4.3 Using PETSc arch: arch-mswin-c-opt ----------------------------------------- grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/include/petscversion.h': No such file or directory ----------------------------------------- Using configure Options: --with-cc="win32fe icl" --with-fc="win32fe ifort" --with-cxx="win32fe icl" --with-external-packages-dir=/cygdrive/c/cygwin_cache --prefix=/cygdrive/c/cygwin_cache/petsc-3.4.2-release-win-64bit --with-blas-lapack-dir="/cygdrive/c/Program Files/Intel/MKL/10.1.0.018/em64t/lib" --with-mpi-dir="/cygdrive/c/Program Files/mpich2x64" --with-debugging=0 --with-x=0 --with-x11=0 --with-xt=0 --with-shared-libraries=0 --useThreads=0 Using configuration flags: grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory makefile:59: recipe for target 'info' failed make[1]: [info] Error 2 (ignored) ----------------------------------------- Using C/C++ compile: /cygdrive/c/cygwin_cache/petsc-3.4.3/bin/win32fe/win32fe icl -c -MT -O3 -QxW -I/cygdrive/c/cygwin_cache/petsc-3.4.3/include -I/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include -I/cygdrive/c/Program\ Files/mpich2x64/include -D__INSDIR__=./ Using Fortran compile: /cygdrive/c/cygwin_cache/petsc-3.4.3/bin/win32fe/win32fe ifort -c -MT -O3 -QxW -fpp -I/cygdrive/c/cygwin_cache/petsc-3.4.3/include -I/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include -I/cygdrive/c/Program\ Files/mpich2x64/include ----------------------------------------- Using C/C++ linker: /cygdrive/c/cygwin_cache/petsc-3.4.3/bin/win32fe/win32fe icl Using C/C++ flags: -MT -O3 -QxW Using Fortran linker: /cygdrive/c/cygwin_cache/petsc-3.4.3/bin/win32fe/win32fe ifort Using Fortran flags: -MT -O3 -QxW -fpp ----------------------------------------- Using libraries: -L/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/lib -lpetsc /cygdrive/c/Program\ Files/Intel/MKL/10.1.0.018/em64t/lib/mkl_dll.lib /cygdrive/c/Program\ Files/mpich2x64/lib/fmpich2.lib /cygdrive/c/Program\ Files/mpich2x64/lib/mpich2.lib Gdi32.lib User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib ------------------------------------------ Using mpiexec: /cygdrive/c/Program\ Files/mpich2x64/bin/mpiexec ========================================== /cygdrive/c/Windows/SUA/common/rm -f -rf /cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/lib/libpetsc*.* /cygdrive/c/Windows/SUA/common/rm -f -f /cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petsc*.mod BEGINNING TO COMPILE LIBRARIES IN ALL DIRECTORIES ========================================= libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/socket send.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\socket\send.c(192): warning #1786: function "close" (declared at line 306 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _close. See online help for details.") " close(s); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\socket\send.c(220): error: identifier "socklen_t" is undefined if ((*t = accept(listenport,(struct sockaddr*)&isa,(socklen_t*)&i)) < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"error from accept()\n"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\socket\send.c(220): error: expected an expression if ((*t = accept(listenport,(struct sockaddr*)&isa,(socklen_t*)&i)) < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SYS,"error from accept()\n"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\socket\send.c(395): warning #1786: function "close" (declared at line 306 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _close. See online help for details.") " close(listenport); ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\socket\send.c (code 2) /usr/bin/ar: send.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/socket/matlab BEGINNING TO COMPILE MATLAB INTERFACE /usr/bin/sh: g: command not found makefile:37: recipe for target 'sread' failed make[11]: [sread] Error 127 (ignored) mv: sread.mex*: No such file or directory makefile:37: recipe for target 'sread' failed make[11]: [sread] Error 1 (ignored) /usr/bin/sh: g: command not found makefile:53: recipe for target 'sopen' failed make[11]: [sopen] Error 127 (ignored) mv: sopen.mex*: No such file or directory makefile:53: recipe for target 'sopen' failed make[11]: [sopen] Error 1 (ignored) /usr/bin/sh: g: command not found makefile:58: recipe for target 'sclose' failed make[11]: [sclose] Error 127 (ignored) mv: sclose.mex*: No such file or directory makefile:58: recipe for target 'sclose' failed make[11]: [sclose] Error 1 (ignored) /usr/bin/sh: g: command not found makefile:48: recipe for target 'swrite' failed make[11]: [swrite] Error 127 (ignored) mv: swrite.mex*: No such file or directory makefile:48: recipe for target 'swrite' failed make[11]: [swrite] Error 1 (ignored) grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/socket/ftn-custom zsendf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/ascii filev.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(676): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vascii->fd = fopen(fname,"r"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(679): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vascii->fd = fopen(fname,"w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(682): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vascii->fd = fopen(fname,"a"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(685): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vascii->fd = fopen(fname,"r+"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(686): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (!vascii->fd) vascii->fd = fopen(fname,"w+"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(692): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vascii->fd = fopen(fname,"r+"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ascii\filev.c(693): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (!vascii->fd) vascii->fd = fopen(fname,"w+"); ^ vcreatea.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/ascii/ftn-auto filevf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/ascii/ftn-custom zfilevf.c zvcreatef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/binary binv.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\binary\binv.c(571): warning #1786: function "close" (declared at line 306 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _close. See online help for details.") " close(vbinary->fdes); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\binary\binv.c(1094): warning #1786: function "open" (declared at line 316 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _sopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if ((vbinary->fdes = open(fname,O_WRONLY|O_CREAT|O_TRUNC|O_BINARY,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file %s for writing",fname); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\binary\binv.c(1096): warning #1786: function "open" (declared at line 316 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _sopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if ((vbinary->fdes = open(fname,O_RDONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for reading",fname); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\binary\binv.c(1098): warning #1786: function "open" (declared at line 316 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _sopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if ((vbinary->fdes = open(fname,O_WRONLY|O_APPEND|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file %s for writing",fname); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\binary\binv.c(1131): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vbinary->fdes_info = fopen(infoname,"w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\binary\binv.c(1195): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vbinary->fdes_info = fopen(infoname,"w"); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/binary/ftn-auto binvf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/binary/ftn-custom zbinvf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/binary/f90-custom zbinvf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/string stringv.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/string/ftn-custom zstringvf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/draw drawv.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/draw/ftn-auto drawvf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/draw/ftn-custom zdrawvf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/vu petscvu.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(99): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vu->fd = fopen(fname, "r"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(102): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vu->fd = fopen(fname, "w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(105): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vu->fd = fopen(fname, "a"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(108): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vu->fd = fopen(fname, "r+"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(109): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (!vu->fd) vu->fd = fopen(fname, "w+"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(115): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " vu->fd = fopen(fname, "r+"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\vu\petscvu.c(116): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (!vu->fd) vu->fd = fopen(fname, "w+"); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/mathematica mathematica.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\MATHEM~1\mathematica.c(5): catastrophic error: could not open source file "mathematica.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\MATHEM~1\mathematica.c (code 4) /usr/bin/ar: mathematica.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/hdf5 hdf5v.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(12): error: identifier "hid_t" is undefined hid_t file_id; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(72): error: identifier "hid_t" is undefined hid_t plist_id; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(73): error: identifier "herr_t" is undefined herr_t herr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(79): error: identifier "H5P_FILE_ACCESS" is undefined plist_id = H5Pcreate(H5P_FILE_ACCESS); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(86): error: identifier "H5F_ACC_RDONLY" is undefined hdf5->file_id = H5Fopen(name, H5F_ACC_RDONLY, plist_id); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(89): error: identifier "H5F_ACC_RDWR" is undefined hdf5->file_id = H5Fopen(name, H5F_ACC_RDWR, plist_id); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(92): error: identifier "H5F_ACC_TRUNC" is undefined hdf5->file_id = H5Fcreate(name, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(92): error: identifier "H5P_DEFAULT" is undefined hdf5->file_id = H5Fcreate(name, H5F_ACC_TRUNC, H5P_DEFAULT, plist_id); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c(184): error: identifier "hid_t" is undefined PetscErrorCode PetscViewerHDF5GetFileId(PetscViewer viewer, hid_t *file_id) ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\hdf5\hdf5v.c (code 2) /usr/bin/ar: hdf5v.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/hdf5/ftn-auto hdf5vf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/hdf5/ftn-custom zhdf5f.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/matlab vmatlab.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\matlab\vmatlab.c(3): catastrophic error: could not open source file "mat.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\matlab\vmatlab.c (code 4) /usr/bin/ar: vmatlab.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/matlab/ftn-custom zvmatlabf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/ams ams.c C:\CYGWIN~1\PETSC-~1.3\include\petscviewerams.h(6): catastrophic error: could not open source file "ams.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\viewer\impls\ams\ams.c (code 4) /usr/bin/ar: ams.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/vtk vtkv.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/impls/vtk/ftn-custom zvtkvf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/interface view.c flush.c viewregall.c viewreg.c viewa.c dlregispetsc.c viewers.c dupl.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/interface/ftn-auto flushf.c viewregf.c viewf.c duplf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/viewer/interface/ftn-custom zviewaf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/interface draw.c dline.c dlinew.c dlinegw.c dtext.c dtextv.c dtexts.c dtextgs.c dpoint.c dpoints.c dviewp.c dcoor.c dpause.c dgpause.c dgcoor.c dbuff.c dsetpause.c dflush.c dsflush.c dclear.c dsclear.c drect.c dtri.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\INTERF~1\dtri.c(82): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(string,"%18.16e",(double)value); ^ dmouse.c drawreg.c drawregall.c dellipse.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/interface/ftn-auto dclearf.c dpointf.c dpausef.c dtextgsf.c drawf.c dtextsf.c drawregf.c dgcoorf.c dellipsef.c dtrif.c dlinegwf.c dsetpausef.c drectf.c dlinewf.c dviewpf.c dlinef.c dflushf.c dmousef.c dsclearf.c dgpausef.c dsflushf.c dcoorf.c dbufff.c dpointsf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/interface/ftn-custom zdrawf.c zdrawregf.c zdtextf.c zdtextvf.c zdtrif.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/impls/tikz tikz.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/impls/x xinit.c C:\CYGWIN~1\PETSC-~1.3\include\../src/sys/classes/draw/impls/x/ximpl.h(11): catastrophic error: could not open source file "X11/Xlib.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\x\xinit.c (code 4) /usr/bin/ar: xinit.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/impls/x/ftn-custom zdrawopenxf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/impls/win32 win32draw.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/impls/opengl openglops.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(155): error: identifier "GLuint" is undefined static GLuint vertexshader,fragmentshader,shaderprogram; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(184): error: identifier "GLenum" is undefined GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(189): error: identifier "GL_VERTEX_SHADER" is undefined vertexshader = glCreateShader(GL_VERTEX_SHADER); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(194): error: identifier "GLchar" is undefined glShaderSource(vertexshader, 1, (const GLchar**)&vertexsource, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(198): error: identifier "GL_COMPILE_STATUS" is undefined glGetShaderiv(vertexshader, GL_COMPILE_STATUS, &isCompiled_VS); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(199): error: identifier "GL_FALSE" is undefined if (isCompiled_VS == GL_FALSE) { ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(203): error: identifier "GL_INFO_LOG_LENGTH" is undefined glGetShaderiv(vertexshader, GL_INFO_LOG_LENGTH, &maxLength); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(210): error: identifier "GL_FRAGMENT_SHADER" is undefined fragmentshader = glCreateShader(GL_FRAGMENT_SHADER); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(215): error: identifier "GLchar" is undefined glShaderSource(fragmentshader, 1, (const GLchar**)&fragmentsource, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(224): error: identifier "GL_INFO_LOG_LENGTH" is undefined glGetShaderiv(fragmentshader, GL_INFO_LOG_LENGTH, &maxLength); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(256): error: identifier "GL_LINK_STATUS" is undefined glGetProgramiv(shaderprogram, GL_LINK_STATUS, &isLinked); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(705): error: identifier "PetscDraw_OpenGL" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(705): error: identifier "win" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(705): error: expected an expression PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(705): error: expected a ";" PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(706): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(707): error: declaration may not appear after executable statement in block float xl,yl,xr,yr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(708): error: declaration may not appear after executable statement in block GLfloat vertices[12]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(708): error: identifier "GLfloat" is undefined GLfloat vertices[12]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(709): error: declaration may not appear after executable statement in block GLfloat colors[18]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(709): error: identifier "GLfloat" is undefined GLfloat colors[18]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(710): error: declaration may not appear after executable statement in block GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(710): error: identifier "GLuint" is undefined GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(711): error: declaration may not appear after executable statement in block GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(711): error: identifier "GLuint" is undefined GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(712): error: declaration may not appear after executable statement in block GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(712): error: identifier "GLenum" is undefined GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(745): error: identifier "GL_ARRAY_BUFFER" is undefined glBindBuffer(GL_ARRAY_BUFFER, positionBufferObject); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(747): error: identifier "GL_STATIC_DRAW" is undefined glBufferData(GL_ARRAY_BUFFER, sizeof(vertices), vertices, GL_STATIC_DRAW); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(751): error: identifier "GL_FLOAT" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(751): error: identifier "GL_FALSE" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(765): error: identifier "GL_TRIANGLES" is undefined glDrawArrays(GL_TRIANGLES, 0, 6); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(790): error: identifier "PetscDraw_OpenGL" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(790): error: identifier "win" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(790): error: expected an expression PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(790): error: expected a ";" PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(791): error: declaration may not appear after executable statement in block GLfloat vertices[2],colors[3]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(791): error: identifier "GLfloat" is undefined GLfloat vertices[2],colors[3]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(792): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(793): error: declaration may not appear after executable statement in block GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(793): error: identifier "GLuint" is undefined GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(794): error: declaration may not appear after executable statement in block GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(794): error: identifier "GLuint" is undefined GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(795): error: declaration may not appear after executable statement in block GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(795): error: identifier "GLenum" is undefined GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(805): error: identifier "GL_ARRAY_BUFFER" is undefined glBindBuffer(GL_ARRAY_BUFFER, positionBufferObject); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(807): error: identifier "GL_STATIC_DRAW" is undefined glBufferData(GL_ARRAY_BUFFER, sizeof(vertices), vertices, GL_STATIC_DRAW); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(811): error: identifier "GL_FLOAT" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(811): error: identifier "GL_FALSE" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(825): error: identifier "GL_POINTS" is undefined glDrawArrays(GL_POINTS, 0, 2); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(837): error: identifier "PetscDraw_OpenGL" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(837): error: identifier "win" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(837): error: expected an expression PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(837): error: expected a ";" PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(838): error: declaration may not appear after executable statement in block GLfloat linevertices[4],colors[6]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(838): error: identifier "GLfloat" is undefined GLfloat linevertices[4],colors[6]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(839): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(840): error: declaration may not appear after executable statement in block GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(840): error: identifier "GLenum" is undefined GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(841): error: declaration may not appear after executable statement in block GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(841): error: identifier "GLuint" is undefined GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(842): error: declaration may not appear after executable statement in block GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(842): error: identifier "GLuint" is undefined GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(858): error: identifier "GL_ARRAY_BUFFER" is undefined glBindBuffer(GL_ARRAY_BUFFER, positionBufferObject); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(860): error: identifier "GL_STATIC_DRAW" is undefined glBufferData(GL_ARRAY_BUFFER, sizeof(linevertices), linevertices, GL_STATIC_DRAW); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(864): error: identifier "GL_FLOAT" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(864): error: identifier "GL_FALSE" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(878): error: identifier "GL_LINES" is undefined glDrawArrays(GL_LINES, 0, 2); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(890): error: identifier "PetscDraw_OpenGL" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(890): error: identifier "win" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(890): error: expected an expression PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(890): error: expected a ";" PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(891): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(892): error: declaration may not appear after executable statement in block GLfloat vertices[6],colors[9]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(892): error: identifier "GLfloat" is undefined GLfloat vertices[6],colors[9]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(893): error: declaration may not appear after executable statement in block GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(893): error: identifier "GLenum" is undefined GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(894): error: declaration may not appear after executable statement in block GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(894): error: identifier "GLuint" is undefined GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(895): error: declaration may not appear after executable statement in block GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(895): error: identifier "GLuint" is undefined GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(911): error: identifier "GL_ARRAY_BUFFER" is undefined glBindBuffer(GL_ARRAY_BUFFER, positionBufferObject); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(913): error: identifier "GL_STATIC_DRAW" is undefined glBufferData(GL_ARRAY_BUFFER, sizeof(vertices), vertices, GL_STATIC_DRAW); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(917): error: identifier "GL_FLOAT" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(917): error: identifier "GL_FALSE" is undefined glVertexAttribPointer(0, 2, GL_FLOAT, GL_FALSE, 0, 0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(931): error: identifier "GL_TRIANGLES" is undefined glDrawArrays(GL_TRIANGLES, 0, 3); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(943): error: identifier "PetscDraw_OpenGL" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(943): error: identifier "win" is undefined PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(943): error: expected an expression PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(943): error: expected a ";" PetscDraw_OpenGL *win = (PetscDraw_OpenGL*)draw->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(944): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(945): error: declaration may not appear after executable statement in block GLfloat vertices[12],colors[18]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(945): error: identifier "GLfloat" is undefined GLfloat vertices[12],colors[18]; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(946): error: declaration may not appear after executable statement in block float x1,y_1,x2,y2; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(947): error: declaration may not appear after executable statement in block GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(947): error: identifier "GLuint" is undefined GLuint positionBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(948): error: declaration may not appear after executable statement in block GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(948): error: identifier "GLuint" is undefined GLuint colorBufferObject; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(949): error: declaration may not appear after executable statement in block GLenum err; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c(949): error: identifier "GLenum" is undefined GLenum err; ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\impls\opengl\openglops.c (code 4) /usr/bin/ar: openglops.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/utils axis.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\draw\utils\axis.c(86): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(buf,"%0.1e",(double)val); ^ lg.c dscatter.c hists.c zoom.c hue.c lgc.c axisc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/utils/ftn-auto axiscf.c histsf.c axisf.c dscatterf.c lgcf.c lgf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/draw/utils/ftn-custom zaxisf.c zzoomf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/matlabengine matlab.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\MATLAB~1\matlab.c(2): catastrophic error: could not open source file "engine.h" #include /* Matlab include file */ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\MATLAB~1\matlab.c (code 4) /usr/bin/ar: matlab.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/matlabengine/ftn-auto matlabf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/matlabengine/ftn-custom zmatlabf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/interface random.c randreg.c dlregisrand.c randomc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/interface/ftn-auto randomf.c randomcf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/interface/ftn-custom zrandomf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/impls grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/impls/rand rand.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/impls/rand48 rand48.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/random/impls/sprng sprng.c C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\random\impls\sprng\sprng.c(7): catastrophic error: could not open source file "sprng.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\classes\random\impls\sprng\sprng.c (code 4) /usr/bin/ar: sprng.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/bag bag.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/bag/f2003-src libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/bag/f2003-src/fsrc grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/bag/ftn-auto bagf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/bag/ftn-custom zbagf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/classes/bag/f90-custom zbagf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/error adebug.c err.c C:\CYGWIN~1\PETSC-~1.3\src\sys\error\err.c(70): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(command,"cd %s; emacsclient --no-wait +%d %s%s\n",pdir,line,dir,file); ^ errtrace.c errabort.c errstop.c fp.c C:\CYGWIN~1\PETSC-~1.3\src\sys\error\fp.c(425): error: expression must have arithmetic or pointer type if (feclearexcept(FE_ALL_EXCEPT)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Cannot clear floating point exception flags\n"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\error\fp.c(436): error: expression must have arithmetic or pointer type if (fesetenv(FE_DFL_ENV)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"Cannot disable floating point exceptions"); ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\error\fp.c (code 2) /usr/bin/ar: fp.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/error/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/error/examples/tests grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/error/ftn-auto adebugf.c errf.c signalf.c fpf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/error/ftn-custom zerrf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/dll dlimpl.c dl.c reg.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/dll/ftn-auto regf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/fileio ffpath.c ftest.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\ftest.c(37): warning #1786: function "access" (declared at line 303 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _access. See online help for details.") " if (!access(fname, m)) { ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\ftest.c(207): warning #592: variable "fp" is used before its value is set f = fgets(found,tlen,fp); ^ ghome.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\ghome.c(35): warning #1786: function "getenv" (declared at line 447 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdlib.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " d1 = getenv("HOME"); ^ mpiuopen.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\mpiuopen.c(58): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(fname,mode); ^ rpath.c fpath.c fwd.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fwd.c(47): warning #1786: function "getcwd" (declared at line 121 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\direct.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _getcwd. See online help for details.") " if (!getcwd(path,len)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_LIB,"getcwd()"); ^ grpath.c mprint.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\mprint.c(138): warning #1786: function "_vsnprintf" (declared at line 358 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _vsnprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fullLengthInt = _vsnprintf(str,len,newformat,Argp); ^ sysio.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(270): warning #1786: function "read" (declared at line 317 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _read. See online help for details.") " err = read(fd,pp,wsize); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(397): warning #1786: function "write" (declared at line 322 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _write. See online help for details.") " err = write(fd,pp,wsize); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(444): warning #1786: function "open" (declared at line 316 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _sopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if ((*fd = open(name,O_WRONLY|O_CREAT|O_TRUNC|O_BINARY,0666)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot create file for writing: %s",name); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(446): warning #1786: function "open" (declared at line 316 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _sopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if ((*fd = open(name,O_RDONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file for reading: %s",name); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(448): warning #1786: function "open" (declared at line 316 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _sopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if ((*fd = open(name,O_WRONLY|O_BINARY,0)) == -1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open file for writing: %s",name); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(480): warning #1786: function "close" (declared at line 306 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _close. See online help for details.") " close(fd); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\sysio.c(527): warning #1786: function "lseek" (declared at line 314 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\io.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _lseek. See online help for details.") " *offset = lseek(fd,off,iwhence); ^ fretrieve.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(185): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(filename,"w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(192): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(filename,"r"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(202): warning #1786: function "unlink" (declared at line 301 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _unlink. See online help for details.") " if (rank == i) unlink(filename); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(302): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(filename,"w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(309): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(filename,"r"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(319): warning #1786: function "unlink" (declared at line 301 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _unlink. See online help for details.") " if (rank == i) unlink(filename); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\fretrieve.c(422): warning #592: variable "fp" is used before its value is set if (!fgets(buf,1024,fp)) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"No output from ${PETSC_DIR}/bin/urlget in getting file %s",libname); ^ smatlab.c C:\CYGWIN~1\PETSC-~1.3\src\sys\fileio\smatlab.c(54): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(command,"echo \"delete ${HOMEDIRECTORY}/matlab/startup.m ; path(path,'${WORKINGDIRECTORY}'); %s \" > ${HOMEDIRECTORY}/matlab/startup.m",script); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/fileio/ftn-auto mpiuopenf.c sysiof.c mprintf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/fileio/ftn-custom zghomef.c zmpiuopenf.c zmprintf.c zsysiof.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/memory mal.c mem.c mtr.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/memory/ftn-auto memf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/memory/ftn-custom zmtrf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/objects version.c gcomm.c gtype.c olist.c pname.c tagm.c destroy.c gcookie.c inherit.c options.c C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\options.c(243): warning #167: argument of type "const char *" is incompatible with parameter of type "void *" if ((!strncmp(in_str+1,"inf",3) || !strncmp(in_str+1,"INF",3)) && !(in_str[4] == '_' || isalnum(in_str[4]))) PetscFunctionReturn(0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\options.c(243): warning #167: argument of type "const char *" is incompatible with parameter of type "void *" if ((!strncmp(in_str+1,"inf",3) || !strncmp(in_str+1,"INF",3)) && !(in_str[4] == '_' || isalnum(in_str[4]))) PetscFunctionReturn(0); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\options.c(380): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(fname,"r"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\options.c(634): warning #1786: function "getenv" (declared at line 447 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdlib.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " eoptions = (char*)getenv("PETSC_OPTIONS"); ^ pgname.c prefix.c init.c C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\init.c(123): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " *fd = fopen(fname,"a"); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\init.c(501): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(name,"%s.%d",mname,rank); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\init.c(503): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " file = fopen(fname,"w"); ^ pinit.c C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\pinit.c(1148): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(sname,"%s_%d",fname,rank); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\pinit.c(1149): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(sname,"w"); if (!fd) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_FILE_OPEN,"Cannot open log file: %s",sname); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\pinit.c(1176): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " fd = fopen(fname,"w"); ^ ptype.c state.c aoptions.c C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(273): warning #1786: function "sscanf" (declared at line 324 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sscanf(str,"%d",&id); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(287): warning #1786: function "sscanf" (declared at line 324 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sscanf(str,"%le",&ir); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(510): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%d",(int)((PetscInt*)PetscOptionsObject.next->data)[0]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(512): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tmp,"%d",(int)((PetscInt*)PetscOptionsObject.next->data)[j]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(518): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%d",(int) *(PetscInt*)PetscOptionsObject.next->data); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(521): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%g",(double) *(PetscReal*)PetscOptionsObject.next->data); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(524): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%g",(double)((PetscReal*)PetscOptionsObject.next->data)[0]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(526): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tmp,"%g",(double)((PetscReal*)PetscOptionsObject.next->data)[j]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(532): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%d",*(int*)PetscOptionsObject.next->data); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(535): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%d",(int)((PetscBool*)PetscOptionsObject.next->data)[0]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(537): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tmp,"%d",(int)((PetscBool*)PetscOptionsObject.next->data)[j]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(549): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(value,"%s",((char**)PetscOptionsObject.next->data)[0]); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\objects\aoptions.c(551): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tmp,"%s",((char**)PetscOptionsObject.next->data)[j]); ^ mpinit.c subcomm.c fcallback.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/objects/f2003-src libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/objects/f2003-src/fsrc grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/objects/ftn-auto gcommf.c destroyf.c pinitf.c tagmf.c optionsf.c inheritf.c ptypef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/objects/ftn-custom zgcommf.c zoptionsf.c zpgnamef.c zpnamef.c zprefixf.c zdestroyf.c zstart.c zstartf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/time cputime.c fdate.c C:\CYGWIN~1\PETSC-~1.3\src\sys\time\fdate.c(50): warning #1786: function "localtime" (declared at line 114 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\time.inl") was declared "deprecated ("This function or variable may be unsafe. Consider using localtime_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " ierr = PetscStrncpy(date,asctime(localtime(&aclock)),len);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\time\fdate.c(50): warning #1786: function "asctime" (declared at line 164 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\time.h") was declared "deprecated ("This function or variable may be unsafe. Consider using asctime_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " ierr = PetscStrncpy(date,asctime(localtime(&aclock)),len);CHKERRQ(ierr); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/time/rs6000_time rs6000_time.c C:\CYGWIN~1\PETSC-~1.3\src\sys\time\RS6000~1\rs6000_time.c(3): catastrophic error: could not open source file "sys/time.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\time\RS6000~1\rs6000_time.c (code 4) /usr/bin/ar: rs6000_time.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/time/nt_time nt_time.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/time/ftn-auto cputimef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/time/ftn-custom zptimef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/utils arch.c fhost.c fuser.c memc.c mpiu.c psleep.c C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\psleep.c(56): warning #1786: function "_sleep" (declared at line 838 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdlib.h") was declared "deprecated ("This function or variable has been superceded by newer library or operating system functionality. Consider using Sleep instead. See online help for details.") " else _sleep((int)s); ^ sortd.c sorti.c str.c C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\str.c(297): warning #1786: function "strcpy" (declared at line 74 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\string.h") was declared "deprecated ("This function or variable may be unsafe. Consider using strcpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (t) strcpy(s,t); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\str.c(330): warning #1786: function "strncpy" (declared at line 157 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\string.h") was declared "deprecated ("This function or variable may be unsafe. Consider using strncpy_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (t) strncpy(s,t,n); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\str.c(359): warning #1786: function "strcat" (declared at line 79 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\string.h") was declared "deprecated ("This function or variable may be unsafe. Consider using strcat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " strcat(s,t); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\str.c(387): warning #1786: function "strncat" (declared at line 144 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\string.h") was declared "deprecated ("This function or variable may be unsafe. Consider using strncat_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " strncat(s,t,n); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\str.c(523): warning #1786: function "stricmp" (declared at line 215 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\string.h") was declared "deprecated ("The POSIX name for this item is deprecated. Instead, use the ISO C++ conformant name: _stricmp. See online help for details.") " else c = stricmp(a,b); ^ sortip.c pbarrier.c pdisplay.c C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\pdisplay.c(61): warning #1786: function "getenv" (declared at line 447 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdlib.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " str = getenv(name); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\pdisplay.c(125): warning #1786: function "getenv" (declared at line 447 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdlib.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _dupenv_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " str = getenv("DISPLAY"); ^ ctable.c psplit.c select.c C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\select.c(56): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(geometry," -geometry %dx%d ",(int)cols,rows); ^ mpimesg.c sseenabled.c mpitr.c mpilong.c mathinf.c mpits.c segbuffer.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/utils/ftn-kernels C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\FTN-KE~1\fcopy.F(12): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,x(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\FTN-KE~1\fcopy.F(13): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,y(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\FTN-KE~1\fcopy.F(26): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,x(1)) ---------------------------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\utils\FTN-KE~1\fcopy.F (code 1) /usr/bin/ar: fcopy.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/utils/ftn-auto mpiuf.c psplitf.c psleepf.c sortipf.c memcf.c sortif.c mpitsf.c sortdf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/utils/ftn-custom zarchf.c zstrf.c zpbarrierf.c zfhostf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/logging plog.c C:\CYGWIN~1\PETSC-~1.3\src\sys\logging\plog.c(1166): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (sname) sprintf(file, "%s.%d", sname, rank); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\logging\plog.c(1167): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " else sprintf(file, "Log.%d", rank); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/logging/utils classlog.c stagelog.c eventlog.c stack.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/logging/ftn-auto plogf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/logging/ftn-custom zplogf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/mpiuni mpi.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/mpiuni/f90-mod /cygdrive/c/cygwin_cache/petsc-3.4.3/bin/win32fe/win32fe ifort -c -MT -O3 -QxW -fpp -I/cygdrive/c/cygwin_cache/petsc-3.4.3/include -I/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include -I/cygdrive/c/Program\ Files/mpich2x64/include -o mpiunimod.o mpiunimod.F /usr/bin/ar cr /cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/lib/libpetsc.lib mpiunimod.o cp: cannot open '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include': No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[8]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:155: recipe for target 'buildmod' failed make[7]: *** [buildmod] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[6]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/info verboseinfo.c C:\CYGWIN~1\PETSC-~1.3\src\sys\info\verboseinfo.c(56): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tname, ".%d", rank); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\info\verboseinfo.c(193): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(string, "[%d] %s(): ", urank,func); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/info/ftn-auto verboseinfof.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/info/ftn-custom zverboseinfof.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/fsrc grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/f90-src f90_cwrap.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/f90-src/fsrc grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/f90-mod usage: cp [-Rr [-H | -L | -P]] [-f | -i] [-mpv] src target cp [-Rr [-H | -L | -P]] [-f | -i] [-mpv] src1 ... srcN directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/python pythonsys.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/python/ftn-custom zpythonf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/ams pams.c C:\CYGWIN~1\PETSC-~1.3\include\petscviewerams.h(6): catastrophic error: could not open source file "ams.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\ams\pams.c (code 4) /usr/bin/ar: pams.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/ams/java BEGINNING TO COMPILE AMSOptions /usr/bin/sh: classpath: command not found makefile:6: recipe for target 'speciallib' failed make[7]: [speciallib] Error 127 (ignored) mv: *.class: No such file or directory makefile:6: recipe for target 'speciallib' failed make[7]: [speciallib] Error 1 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/totalview tv_data_display.c C:\CYGWIN~1\PETSC-~1.3\src\sys\TOTALV~1\tv_data_display.c(79): warning #1786: function "_snprintf" (declared at line 358 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using _snprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " out = snprintf(TV_data_buffer_ptr,remaining, "%s\t%s\t%p\n",field_name, type_name, value); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/yaml yamlimpls.c C:\CYGWIN~1\PETSC-~1.3\src\sys\yaml\yamlimpls.c(5): catastrophic error: could not open source file "yaml.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\yaml\yamlimpls.c (code 4) /usr/bin/ar: yamlimpls.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/yaml/ftn-custom zyamlimplsf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/interface dlregisthreadcomm.c threadcomm.c threadcommregi.c threadcommred.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/interface/ftn-auto threadcommf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/impls grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/impls/pthread tcpthread.c C:\CYGWIN~1\PETSC-~1.3\include\../src/sys/threadcomm/impls/pthread/tcpthreadimpl.h(43): error: identifier "pthread_t" is undefined pthread_t *tid; /* thread ids */ ^ C:\CYGWIN~1\PETSC-~1.3\include\../src/sys/threadcomm/impls/pthread/tcpthreadimpl.h(44): error: identifier "pthread_attr_t" is undefined pthread_attr_t *attr; /* thread attributes */ ^ C:\CYGWIN~1\PETSC-~1.3\include\../src/sys/threadcomm/impls/pthread/tcpthreadimpl.h(69): error: identifier "pthread_key_t" is undefined extern pthread_key_t PetscPThreadRankkey; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c(10): error: identifier "pthread_key_t" is undefined pthread_key_t PetscPThreadRankkey; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c(42): error: identifier "pthread_attr_t" is undefined pthread_attr_t *attr =ptcomm->attr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c(42): error: identifier "attr" is undefined pthread_attr_t *attr =ptcomm->attr; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c(47): error: declaration may not appear after executable statement in block PetscInt i; ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c(180): error: identifier "pthread_t" is undefined ierr = PetscMalloc(tcomm->nworkThreads*sizeof(pthread_t),&ptcomm->tid);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c(182): error: identifier "pthread_attr_t" is undefined ierr = PetscMalloc(tcomm->nworkThreads*sizeof(pthread_attr_t),&ptcomm->attr);CHKERRQ(ierr); ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\pthread\tcpthread.c (code 2) /usr/bin/ar: tcpthread.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/impls/nothread nothread.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/impls/openmp tcopenmp.c C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\openmp\tcopenmp.c(21): warning #161: unrecognized #pragma #pragma omp parallel num_threads(tcomm->nworkThreads) shared(tcomm) ^ C:\CYGWIN~1\PETSC-~1.3\src\sys\THREAD~1\impls\openmp\tcopenmp.c(44): warning #161: unrecognized #pragma #pragma omp parallel num_threads(tcomm->nworkThreads) shared(job) private(trank) ^ libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/threadcomm/examples/tutorials grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/webserver grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/sys/ftn-custom zsys.c zutils.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils vinv.c vscat.c vpscat.c cmesh.c vecio.c comb.c vecstash.c vecmpitoseq.c vecs.c vsection.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils/matlab gcreatev.c C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\matlab\gcreatev.c(5): catastrophic error: could not open source file "engine.h" #include /* MATLAB include file */ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\matlab\gcreatev.c (code 4) /usr/bin/ar: gcreatev.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils/veccusp vscatcusp.c C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(50): error: struct "_p_Vec" has no field "valid_GPU_array" if (x->valid_GPU_array != PETSC_CUSP_UNALLOCATED && (nsends>0 || nrecvs>0)) { ^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(50): error: identifier "PETSC_CUSP_UNALLOCATED" is undefined if (x->valid_GPU_array != PETSC_CUSP_UNALLOCATED && (nsends>0 || nrecvs>0)) { ^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(80): error: identifier "PetscCUSPIndices" is undefined ierr = PetscCUSPIndicesCreate(ns*bs,sindicesSends,nr*from->bs,sindicesRecvs,(PetscCUSPIndices*)&inctx->spptr);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(80): error: expected an expression ierr = PetscCUSPIndicesCreate(ns*bs,sindicesSends,nr*from->bs,sindicesRecvs,(PetscCUSPIndices*)&inctx->spptr);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(80): error: expression must have integral type ierr = PetscCUSPIndicesCreate(ns*bs,sindicesSends,nr*from->bs,sindicesRecvs,(PetscCUSPIndices*)&inctx->spptr);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(124): error: identifier "PetscCUSPIndices" is undefined ierr = VecCUSPResetIndexBuffersFlagsGPU_Public((PetscCUSPIndices)inctx->spptr);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c(124): error: expected a ")" ierr = VecCUSPResetIndexBuffersFlagsGPU_Public((PetscCUSPIndices)inctx->spptr);CHKERRQ(ierr); ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\utils\veccusp\vscatcusp.c (code 2) /usr/bin/ar: vscatcusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils/veccusp/ftn-auto vscatcuspf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils/ftn-auto cmeshf.c vscatf.c vecmpitoseqf.c veciof.c vpscatf.c vinvf.c combf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils/ftn-custom zvscatf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/utils/f90-custom zvsectionf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/interface vector.c veccreate.c vecreg.c vecregall.c dlregisvec.c rvector.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/interface/ftn-auto rvectorf.c veccreatef.c vectorf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/interface/ftn-custom zvecregf.c zvectorf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/interface/f90-custom zvectorf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq bvec2.c bvec1.c dvec2.c vseqcr.c bvec3.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq/ftn-kernels C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\impls\seq\FTN-KE~1\fwaxpy.F(15): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,x(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\impls\seq\FTN-KE~1\fwaxpy.F(16): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,y(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\impls\seq\FTN-KE~1\fwaxpy.F(17): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,w(1)) ---------------------------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\impls\seq\FTN-KE~1\fwaxpy.F (code 1) /usr/bin/ar: fwaxpy.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq/seqcusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: veccusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq/seqcusp/ftn-auto veccuspf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq/ftn-auto vseqcrf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq/ftn-custom zbvec2f.c zvsectionf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/seq/f90-custom zvsectionf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/mpi pbvec.c pdvec.c pvec2.c vmpicr.c commonmpvec.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/mpi/mpicusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: mpicusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/mpi/ftn-auto vmpicrf.c pbvecf.c commonmpvecf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/mpi/ftn-custom zpbvecf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/shared shvec.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/shared/ftn-auto shvecf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/hypre vhyp.c C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\impls\hypre\vhyp.c(8): catastrophic error: could not open source file "HYPRE.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\vec\vec\impls\hypre\vhyp.c (code 4) /usr/bin/ar: vhyp.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/nest vecnest.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/nest/ftn-auto vecnestf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/impls/nest/ftn-custom zvecnestf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/vec/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/interface index.c isregall.c isreg.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/interface/ftn-auto indexf.c isregf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/interface/ftn-custom zindexf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/interface/f90-custom zindexf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/general general.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/general/ftn-auto generalf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/stride stride.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/stride/ftn-auto stridef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/block block.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/block/ftn-auto blockf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/block/ftn-custom zblockf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/impls/f90-custom zblockf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/utils iscomp.c iscoloring.c isdiff.c isblock.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/utils/ftn-auto iscompf.c isdifff.c iscoloringf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/utils/ftn-custom ziscoloringf.c zisltogf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/is/utils/f90-custom ziscoloringf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/interface dlregissf.c sfregi.c sf.c sftype.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/interface/ftn-auto sff.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/impls grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/impls/window sfwindow.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/impls/basic sfbasic.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/sf/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/interface ao.c dlregisdm.c aoreg.c aoregall.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/interface/ftn-auto aof.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/interface/ftn-custom zaof.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls/basic aobasic.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls/basic/ftn-custom zaobasicf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls/mapping aomapping.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls/mapping/ftn-auto aomappingf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls/mapping/ftn-custom zaomappingf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/impls/memscalable aomemscalable.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/ao/examples/tests/ex3d libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/utils isltog.c pmap.c vsectionis.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/is/utils/ftn-auto vsectionisf.c isltogf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/interface pf.c pfall.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/interface/ftn-auto pff.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/impls/constant const.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/impls/string cstring.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/impls/matlab cmatlab.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/pf/examples/tutorials grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/vec/f90-mod C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F(4): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCSYSDEF] use petscsysdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCISDEF] use petscisdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F(11): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCSYS] use petscsys ------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F(16): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCISDEF] use petscisdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F(22): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCVECDEF] use petscvecdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F(23): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCIS] use petscis ------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\vec\f90-mod\petscvecmod.F (code 1) /usr/bin/ar: petscvecmod.o: No such file or directory cp: *.mod: No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/interface matrix.c mhas.c matreg.c matregis.c matnull.c dlregismat.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/interface/ftn-auto mhasf.c matnullf.c matrixf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/interface/ftn-custom zmatregf.c zmatrixf.c zmatnullf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/interface/f90-custom zmatrixf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/dense libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/dense/seq dense.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/dense/seq/ftn-custom zdensef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/dense/mpi mpidense.c mmdense.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/dense/mpi/ftn-auto mpidensef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/dense/mpi/ftn-custom zmpidensef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq aij.c aijfact.c ij.c fdaij.c matmatmult.c symtranspose.c matptap.c matrart.c inode.c inode2.c matmatmatmult.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/superlu superlu.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\superlu\superlu.c(33): catastrophic error: could not open source file "slu_ddefs.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\superlu\superlu.c (code 4) /usr/bin/ar: superlu.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/superlu/ftn-auto superluf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/umfpack umfpack.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\umfpack\umfpack.c(80): catastrophic error: could not open source file "umfpack.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\umfpack\umfpack.c (code 4) /usr/bin/ar: umfpack.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/essl essl.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/lusol lusol.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\lusol\lusol.c(25): error: expected a ";" PETSC_EXTERN void PETSC_STDCALL M1PAGE() ^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\lusol\lusol.c(43): warning #12: parsing restarts here after previous syntax error int *rpinv, int *cpinv, double *w, int *inform); ^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\lusol\lusol.c(45): error: expected a ";" PETSC_EXTERN void PETSC_STDCALL LU6SOL(int *mode, int *m, int *n, double *rhs, double *x, ^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\lusol\lusol.c(49): warning #12: parsing restarts here after previous syntax error int *inform); ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\lusol\lusol.c (code 2) /usr/bin/ar: lusol.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/matlab aijmatlab.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\matlab\aijmatlab.c(8): catastrophic error: could not open source file "engine.h" #include /* MATLAB include file */ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\matlab\aijmatlab.c (code 4) /usr/bin/ar: aijmatlab.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/csrperm csrperm.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/crl crl.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/crl/ftn-kernels libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/bas basfactor.c spbas.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/ftn-kernels grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/seqcusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: aijcusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/seqcusp/ftn-auto aijcuspf.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\seqcusp\ftn-auto\aijcuspf.c(54): error: identifier "MatCUSPFormatOperation" is undefined void PETSC_STDCALL matcuspsetformat_(Mat A,MatCUSPFormatOperation *op,MatCUSPStorageFormat *format, int *__ierr ){ ^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\seqcusp\ftn-auto\aijcuspf.c(54): error: identifier "MatCUSPStorageFormat" is undefined void PETSC_STDCALL matcuspsetformat_(Mat A,MatCUSPFormatOperation *op,MatCUSPStorageFormat *format, int *__ierr ){ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\seqcusp\ftn-auto\aijcuspf.c (code 2) /usr/bin/ar: aijcuspf.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/cholmod aijcholmod.c C:\CYGWIN~1\PETSC-~1.3\include\../src/mat/impls/sbaij/seq/cholmod/cholmodimpl.h(44): catastrophic error: could not open source file "cholmod.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\cholmod\aijcholmod.c (code 4) /usr/bin/ar: aijcholmod.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/seqcusparse /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: aijcusparse.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/seqcusparse/ftn-auto aijcusparsef.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\SEQCUS~1\ftn-auto\aijcusparsef.c(54): error: identifier "MatCUSPARSEFormatOperation" is undefined void PETSC_STDCALL matcusparsesetformat_(Mat A,MatCUSPARSEFormatOperation *op,MatCUSPARSEStorageFormat *format, int *__ierr ){ ^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\SEQCUS~1\ftn-auto\aijcusparsef.c(54): error: identifier "MatCUSPARSEStorageFormat" is undefined void PETSC_STDCALL matcusparsesetformat_(Mat A,MatCUSPARSEFormatOperation *op,MatCUSPARSEStorageFormat *format, int *__ierr ){ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\seq\SEQCUS~1\ftn-auto\aijcusparsef.c (code 2) /usr/bin/ar: aijcusparsef.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/ftn-auto aijf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/seq/ftn-custom zaijf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi mpiaij.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\mpiaij.c(4502): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(name,"%s.%d",outfile,rank); ^ mmaij.c mpiaijpc.c mpiov.c fdmpiaij.c mpiptap.c mpimatmatmult.c mpb_aij.c mpimatmatmatmult.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/superlu_dist superlu_dist.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\SUPERL~1\superlu_dist.c(22): catastrophic error: could not open source file "superlu_ddefs.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\SUPERL~1\superlu_dist.c (code 4) /usr/bin/ar: superlu_dist.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/mumps mumps.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\mumps\mumps.c(20): catastrophic error: could not open source file "dmumps_c.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\mumps\mumps.c (code 4) /usr/bin/ar: mumps.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/mumps/ftn-auto mumpsf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/csrperm mpicsrperm.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/crl mcrl.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/pastix pastix.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\pastix\pastix.c(14): catastrophic error: could not open source file "pastix.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\pastix\pastix.c (code 4) /usr/bin/ar: pastix.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/mpicusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: mpiaijcusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/mpicusp/ftn-auto mpiaijcuspf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/mpicusparse /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: mpiaijcusparse.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/mpicusparse/ftn-auto mpiaijcusparsef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/clique clique.cxx C:\CYGWIN~1\PETSC-~1.3\include\../src/mat/impls/aij/mpi/clique/matcliqueimpl.h(4): catastrophic error: could not open source file "clique.hpp" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\aij\mpi\clique\clique.cxx (code 4) /usr/bin/ar: clique.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/ftn-auto mpiaijf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/aij/mpi/ftn-custom zmpiaijf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/shell shell.c shellcnv.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/shell/ftn-auto shellf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/shell/ftn-custom zshellf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/seq baij.c baij2.c baijfact.c baijfact2.c dgefa.c dgedi.c dgefa3.c dgefa4.c dgefa5.c dgefa2.c dgefa6.c dgefa7.c aijbaij.c baijfact3.c baijfact4.c baijfact5.c baijfact7.c baijfact9.c baijfact11.c baijfact13.c baijsolvtrannat.c baijsolvtran.c baijsolv.c baijsolvnat.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/seq/bstream bstream.c bstrmfact.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/seq/ftn-kernels C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(27): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,a(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(28): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,x(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(29): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,b(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(30): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,ai(1)) ----------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(31): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,aj(1)) ----------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(32): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,adiag(1)) -------------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(118): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,a(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(119): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,w(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(120): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,x(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(121): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,b(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(122): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,ai(1)) ----------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(123): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,aj(1)) ----------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(124): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,adiag(1)) -------------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(228): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,a(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(229): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,w(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(230): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,x(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(231): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,b(1)) ---------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(232): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,ai(1)) ----------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(233): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,aj(1)) ----------------------------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F(234): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % . = => PETSC_AssertAlignx(16,adiag(1)) -------------------------------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\baij\seq\FTN-KE~1\fsolvebaij.F (code 1) /usr/bin/ar: fsolvebaij.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/seq/ftn-auto baijf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/seq/ftn-custom zbaijf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/mpi mpibaij.c mmbaij.c baijov.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/mpi/bstream mpibstream.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/mpi/ftn-auto mpibaijf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/baij/mpi/ftn-custom zmpibaijf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/adj libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/adj/mpi mpiadj.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/adj/mpi/ftn-auto mpiadjf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/adj/mpi/ftn-custom zmpiadjf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/maij maij.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/is matis.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/is/ftn-auto matisf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/seq sbaij.c sbaij2.c sbaijfact.c sbaijfact2.c sro.c sbaijfact3.c sbaijfact4.c sbaijfact5.c sbaijfact6.c sbaijfact7.c sbaijfact8.c sbaijfact9.c sbaijfact10.c sbaijfact11.c sbaijfact12.c aijsbaij.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/seq/sbstream sbstream.c sbstrmfact.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/seq/cholmod sbaijcholmod.c C:\CYGWIN~1\PETSC-~1.3\include\../src/mat/impls/sbaij/seq/cholmod/cholmodimpl.h(44): catastrophic error: could not open source file "cholmod.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\sbaij\seq\cholmod\sbaijcholmod.c (code 4) /usr/bin/ar: sbaijcholmod.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/seq/ftn-auto sbaijf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/seq/ftn-custom zsbaijf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/mpi mpisbaij.c mmsbaij.c sbaijov.c mpiaijsbaij.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/mpi/sbstream mpisbstream.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/mpi/ftn-auto mpisbaijf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/sbaij/mpi/ftn-custom zmpisbaijf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/normal normm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/normal/ftn-auto normmf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/lrc lrc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/lrc/ftn-auto lrcf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/scatter mscatter.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/scatter/ftn-auto mscatterf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/blockmat libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/blockmat/seq blockmat.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/composite mcomposite.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/composite/ftn-auto mcompositef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/mffd mffd.c mffddef.c mfregis.c wp.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/mffd/ftn-auto wpf.c mffdf.c mffddeff.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/mffd/ftn-custom zmffdf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/transpose transm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/transpose/ftn-auto transmf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/python pythonmat.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/python/ftn-custom zpythonmf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/submat submat.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/submat/ftn-auto submatf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/localref mlocalref.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/localref/ftn-auto mlocalreff.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/nest matnest.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/nest/ftn-auto matnestf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/nest/ftn-custom zmatnestf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/fft fft.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/fft/fftw fftw.c C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\fft\fftw\fftw.c(9): catastrophic error: could not open source file "fftw3-mpi.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\fft\fftw\fftw.c (code 4) /usr/bin/ar: fftw.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/fft/fftw/ftn-auto fftwf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/fft/fftw/ftn-custom zfftwf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/fft/ftn-auto fftf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/impls/elemental matelem.cxx C:\CYGWIN~1\PETSC-~1.3\include\../src/mat/impls/elemental/matelemimpl.h(4): catastrophic error: could not open source file "elemental.hpp" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\impls\ELEMEN~1\matelem.cxx (code 4) /usr/bin/ar: matelem.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/utils convert.c matstash.c axpy.c zerodiag.c getcolv.c gcreate.c freespace.c compressedrow.c multequal.c matstashspace.c pheap.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/utils/ftn-auto zerodiagf.c getcolvf.c gcreatef.c multequalf.c axpyf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/utils/ftn-custom libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/matfd fdmatrix.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/matfd/ftn-auto fdmatrixf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/matfd/ftn-custom zfdmatrixf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition partition.c spartition.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/chaco chaco.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/chaco/ftn-auto chacof.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/party party.c C:\CYGWIN~1\PETSC-~1.3\src\mat\PARTIT~1\impls\party\party.c(12): catastrophic error: could not open source file "party_lib.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\PARTIT~1\impls\party\party.c (code 4) /usr/bin/ar: party.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/party/ftn-auto partyf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/party/ftn-custom zpartyf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/pmetis pmetis.c C:\CYGWIN~1\PETSC-~1.3\src\mat\PARTIT~1\impls\pmetis\pmetis.c(8): catastrophic error: could not open source file "parmetis.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\PARTIT~1\impls\pmetis\pmetis.c (code 4) /usr/bin/ar: pmetis.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/pmetis/ftn-auto pmetisf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/scotch scotch.c C:\CYGWIN~1\PETSC-~1.3\src\mat\PARTIT~1\impls\scotch\scotch.c(5): catastrophic error: could not open source file "ptscotch.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\PARTIT~1\impls\scotch\scotch.c (code 4) /usr/bin/ar: scotch.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/impls/scotch/ftn-auto scotchf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/ftn-auto partitionf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/partition/ftn-custom zpartitionf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/coarsen coarsen.c scoarsen.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/coarsen/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/coarsen/impls/mis mis.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/coarsen/impls/hem hem.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/coarsen/ftn-auto coarsenf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/order sp1wd.c spnd.c spqmd.c sprcm.c sorder.c sregis.c degree.c fnroot.c genqmd.c qmdqt.c rcm.c fn1wd.c gen1wd.c genrcm.c qmdrch.c rootls.c fndsep.c gennd.c qmdmrg.c qmdupd.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/order/amd amd.c C:\CYGWIN~1\PETSC-~1.3\src\mat\order\amd\amd.c(7): catastrophic error: could not open source file "amd.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\order\amd\amd.c (code 4) /usr/bin/ar: amd.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/order/ftn-custom zsorderf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/color degr.c setr.c dsm.c ido.c numsrt.c seq.c slo.c color.c scolor.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/color/ftn-custom zcolorf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/f90-mod C:\CYGWIN~1\PETSC-~1.3\src\mat\f90-mod\petscmatmod.F(4): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCVECDEF] use petscvecdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\f90-mod\petscmatmod.F(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCMATDEF] use petscmatdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\mat\f90-mod\petscmatmod.F(11): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCVEC] use petscvec ------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\mat\f90-mod\petscmatmod.F (code 1) /usr/bin/ar: petscmatmod.o: No such file or directory cp: *.mod: No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/ftn-kernels grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/mat/ftn-custom zmat.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/da da2.c C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\da2.c(83): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(node,"%d",(int)base++); ^ C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\da2.c(98): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(node,"%d",(int)(idx[base]/dd->w)); ^ da1.c C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\da1.c(88): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(node,"%d",(int)base++); ^ da3.c C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\da3.c(108): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(node,"%d",rank); ^ C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\da3.c(113): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(node,"%d",(int)base++); ^ C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\da3.c(138): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(node,"%d",(int)(idx[base]/dd->w)); ^ daghost.c dacorn.c dagtol.c daltol.c daindex.c dascatter.c dacreate.c dadestroy.c dalocal.c dadist.c daview.c dasub.c gr1.c gr2.c dagtona.c dainterp.c dapf.c dagetarray.c dagetelem.c da.c dareg.c fdda.c grvtk.c dageometry.c dadd.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/da/usfft matusfft.c C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\usfft\matusfft.c(9): catastrophic error: could not open source file "fftw3.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\usfft\matusfft.c (code 4) /usr/bin/ar: matusfft.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/da/hypre mhyp.c C:\CYGWIN~1\PETSC-~1.3\include\../src/dm/impls/da/hypre/mhyp.h(6): catastrophic error: could not open source file "HYPRE_struct_mv.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\da\hypre\mhyp.c (code 4) /usr/bin/ar: mhyp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/da/ftn-auto dagetarrayf.c gr1f.c daindexf.c daddf.c dainterpf.c daghostf.c dageometryf.c fddaf.c dadistf.c dacornf.c dacreatef.c daltolf.c daf.c dagtolf.c dagtonaf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/da/ftn-custom zdaf.c zda1f.c zda2f.c zda3f.c zdacornf.c zdagetscatterf.c zdaindexf.c zdaviewf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/da/f90-custom zdaindexf90.c zda1f90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/adda adda.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/adda/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/adda/examples/tests grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/adda/ftn-auto addaf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/sliced sliced.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/composite pack.c packm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/composite/ftn-auto packf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/composite/ftn-custom zfddaf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/composite/f90-custom zfddaf90.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/redundant dmredundant.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/redundant/ftn-auto dmredundantf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/plex plexcreate.c plex.c plexinterpolate.c plexpreallocate.c plexgeometry.c plexlabel.c plexsubmesh.c plexexodusii.c plexcgns.c plexvtk.c plexpoint.c plexvtu.c plexfem.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/plex/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/plex/examples/tests grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/plex/ftn-auto plexinterpolatef.c plexfemf.c plexpointf.c plexcreatef.c plexcgnsf.c plexexodusiif.c plexsubmeshf.c plexlabelf.c plexf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/plex/ftn-custom zplex.c zplexsubmesh.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/plex/f90-custom zplexf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/shell dmshell.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/shell/ftn-auto dmshellf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/shell/ftn-custom zdmshellf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/patch patchcreate.c patch.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/patch/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/patch/examples/tests grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/patch/ftn-auto patchcreatef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/moab dmmoab.cxx C:\CYGWIN~1\PETSC-~1.3\include\petscdmmoab.h(8): catastrophic error: could not open source file "moab/Core.hpp" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\dm\impls\moab\dmmoab.cxx (code 4) /usr/bin/ar: dmmoab.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/moab/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/impls/moab/examples/tests grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/f90-mod C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(4): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCMATDEF] use petscmatdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCAODEF] use petscaodef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(11): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCMAT] use petscmat ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(16): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCAODEF] use petscaodef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(22): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDEF] use petscdmdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(23): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCAO] use petscao ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(28): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDEF] use petscdmdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(34): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDADEF] use petscdmdadef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(35): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDM] use petscdm ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(40): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDM] use petscdm ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(45): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDM] use petscdm ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(50): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDEF] use petscdmdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(56): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMMESHDEF] use petscdmmeshdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F(57): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDM] use petscdm ------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\dm\f90-mod\petscdmmod.F (code 1) /usr/bin/ar: petscdmmod.o: No such file or directory cp: *.mod: No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/interface dm.c dmregall.c dmget.c dmi.c dlregisdmdm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/interface/ftn-auto dmf.c dmgetf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/interface/ftn-custom zdmf.c zdmgetf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/dt libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/dt/interface dt.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/dt/interface/ftn-auto dtf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/dt/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/dm/dt/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/interface precon.c pcset.c pcregis.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/interface/ftn-auto pcsetf.c preconf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/interface/ftn-custom zpcsetf.c zpreconf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/jacobi jacobi.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/jacobi/ftn-auto jacobif.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/none none.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/sor sor.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/sor/ftn-auto sorf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/shell shellpc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/shell/ftn-auto shellpcf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/shell/ftn-custom zshellpcf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/bjacobi bjacobi.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/bjacobi/ftn-auto bjacobif.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/bjacobi/ftn-custom zbjacobif.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/mg mg.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\mg\mg.c(248): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tprefix,"mg_levels_%d_",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\mg\mg.c(406): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"MGSetup Level %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\mg\mg.c(408): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"MGSmooth Level %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\mg\mg.c(411): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"MGResid Level %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\mg\mg.c(413): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"MGInterp Level %d",(int)i); ^ fmg.c smg.c mgfunc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/mg/ftn-auto mgf.c mgfuncf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/mg/ftn-custom zmgf.c zmgfuncf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/eisens eisen.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/eisens/ftn-auto eisenf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/asm asm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/asm/ftn-auto asmf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/asm/ftn-custom zasmf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/ksp pcksp.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/ksp/ftn-auto pckspf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/composite composite.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\COMPOS~1\composite.c(352): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(newprefix,"sub_%d_",(int)cnt); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/composite/ftn-auto compositef.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/composite/ftn-custom zcompositef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/redundant redundant.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/redundant/ftn-auto redundantf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/spai ispai.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\spai\ispai.c(29): catastrophic error: could not open source file "spai.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\spai\ispai.c (code 4) /usr/bin/ar: ispai.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/spai/ftn-auto ispaif.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/is pcis.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/is/nn nn.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/is/ftn-auto pcisf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/pbjacobi pbjacobi.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/ml ml.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\ml\ml.c(18): catastrophic error: could not open source file "ml_include.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\ml\ml.c (code 4) /usr/bin/ar: ml.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/mat pcmat.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/hypre hypre.c C:\CYGWIN~1\PETSC-~1.3\include\../src/dm/impls/da/hypre/mhyp.h(6): catastrophic error: could not open source file "HYPRE_struct_mv.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\hypre\hypre.c (code 4) /usr/bin/ar: hypre.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/hypre/ftn-custom zhypref.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/tfs bitmask.c comm.c gs.c ivec.c xxt.c xyt.c tfs.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/fieldsplit fieldsplit.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/fieldsplit/ftn-auto fieldsplitf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/fieldsplit/ftn-custom zfieldsplitf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor factor.c factimpl.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/lu lu.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/ilu ilu.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/icc icc.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/cholesky cholesky.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/cholesky/ftn-auto choleskyf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/ftn-auto factorf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/factor/ftn-custom zluf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/galerkin galerkin.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/galerkin/ftn-auto galerkinf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/openmp hpc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/asa asa.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/cp cp.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/wb wb.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/wb/ftn-auto wbf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/python pythonpc.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/python/ftn-custom zpythonpcf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/ainvcusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: ainvcusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/sacusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: sacusp.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/bicgstabcusp /usr/bin/sh: line 1: -c: command not found /usr/bin/ar: bicgstabcusp.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/lsc lsc.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/redistribute redistribute.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/redistribute/ftn-auto redistributef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/gasm gasm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/gasm/ftn-auto gasmf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/svd svd.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/gamg gamg.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\gamg\gamg.c(497): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(fname,"Cmat_%d.m",llev++); ^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\gamg\gamg.c(503): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(fname,"Cmat_%d.m",llev++); ^ agg.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\gamg\agg.c(342): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(fname,"Gmat2_%d.m",llev++); ^ geo.c tools.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/gamg/ftn-auto gamgf.c aggf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/parms parms.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\parms\parms.c(19): catastrophic error: could not open source file "parms_sys.h" #include "parms_sys.h" ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\parms\parms.c (code 4) /usr/bin/ar: parms.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/parms/ftn-auto parmsf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/bddc bddc.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\bddc\bddc.h(8): catastrophic error: could not open source file "metis.h" #include "metis.h" ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\bddc\bddc.c (code 4) /usr/bin/ar: bddc.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/impls/bddc/ftn-auto bddcf.c C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\bddc\ftn-auto\bddcf.c(102): error: identifier "CoarseProblemType" is undefined void PETSC_STDCALL pcbddcsetcoarseproblemtype_(PC pc,CoarseProblemType *CPT, int *__ierr ){ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\pc\impls\bddc\ftn-auto\bddcf.c (code 2) /usr/bin/ar: bddcf.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/pc/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/interface itcl.c itfunc.c iguess.c itcreate.c iterativ.c itres.c itregis.c xmon.c eige.c dlregisksp.c dmksp.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/interface/ams kspams.c C:\CYGWIN~1\PETSC-~1.3\include\petscviewerams.h(6): catastrophic error: could not open source file "ams.h" #include ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\ksp\INTERF~1\ams\kspams.c (code 4) /usr/bin/ar: kspams.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/interface/ftn-auto eigef.c itclf.c itcreatef.c itresf.c itfuncf.c iterativf.c xmonf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/interface/ftn-custom zitclf.c zitcreatef.c zitfuncf.c zxonf.c zdmkspf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/interface/f90-custom zitfuncf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cr cr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cr/pipecr pipecr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/bcgs bcgs.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/bcgs/fbcgs fbcgs.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/bcgs/fbcgsr fbcgsr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/bcgsl bcgsl.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/bcgsl/ftn-auto bcgslf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg cg.c cgeig.c cgtype.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/cgne cgne.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/gltr gltr.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/gltr/ftn-auto gltrf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/nash nash.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/nash/ftn-auto nashf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/stcg stcg.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/stcg/ftn-auto stcgf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/pipecg pipecg.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/groppcg groppcg.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cg/ftn-auto cgtypef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cgs cgs.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres gmres.c borthog.c borthog2.c gmres2.c gmreig.c gmpre.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/lgmres lgmres.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/fgmres fgmres.c modpcf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/fgmres/ftn-auto modpcff.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/fgmres/ftn-custom zmodpcff.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/dgmres dgmres.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/pgmres pgmres.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gmres/ftn-auto gmpref.c gmresf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cheby cheby.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/cheby/ftn-auto chebyf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/rich rich.c richscale.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/rich/ftn-auto richscalef.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/lsqr lsqr.c lsqr_monitor.c lsqr_converged.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/preonly preonly.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/tcqmr tcqmr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/tfqmr tfqmr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/qcg qcg.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/qcg/ftn-auto qcgf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/bicg bicg.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/minres minres.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/symmlq symmlq.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/lcd lcd.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/ibcgs ibcgs.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/python pythonksp.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/python/ftn-custom zpythonkspf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/gcr gcr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/impls/specest specest.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/utils schurm.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/ksp/utils/ftn-auto schurmf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ksp/f90-mod C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F(4): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDEF] use petscdmdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCPCDEF] use petscpcdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F(16): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCKSPDEF] use petsckspdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F(17): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDM] use petscdm ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F(22): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCKSPDEF] use petsckspdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F(23): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCPC] use petscpc ------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ksp\f90-mod\petsckspmod.F (code 1) /usr/bin/ar: petsckspmod.o: No such file or directory cp: *.mod: No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/interface snes.c snesj.c snesregi.c snesut.c snesj2.c dlregissnes.c snesob.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/interface/noise snesmfj2.c snesnoise.c C:\CYGWIN~1\PETSC-~1.3\src\snes\INTERF~1\noise\snesnoise.c(55): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " if (flg) neP->fp = fopen(noise_file,"w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\INTERF~1\noise\snesnoise.c(56): warning #1786: function "fopen" (declared at line 237 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using fopen_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " else neP->fp = fopen("noise.out","w"); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\INTERF~1\noise\snesnoise.c(279): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(filename,"y2.%d.out",(int)i); ^ snesdnest.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/interface/ftn-auto snesf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/interface/ftn-custom zsnesf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/interface/f90-custom zsnesf90.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/mf snesmfj.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/mf/ftn-auto snesmfjf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ksponly ksponly.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ls ls.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/tr tr.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/test snestest.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/richardson snesrichardson.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/python pythonsnes.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/python/ftn-custom zpythonsf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/vi vi.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/vi/ss viss.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/vi/rs virs.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/vi/ftn-auto vif.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ngmres snesngmres.c ngmresfunc.c anderson.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ngmres/ftn-auto snesngmresf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/qn qn.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/qn/ftn-auto qnf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/shell snesshell.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/shell/ftn-auto snesshellf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/shell/ftn-custom zsnesshellf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ncg snesncg.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ncg/ftn-auto snesncgf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/fas fas.c fasgalerkin.c fasfunc.c C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(123): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tprefix,"fas_levels_%d_cycle_",(int)fas->level); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(401): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"FASSetup %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(403): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"FASSmooth %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(405): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"FASResid %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(408): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(eventname,"FASInterp %d",(int)i); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(445): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tprefix,"fas_coarse_"); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\impls\fas\fasfunc.c(451): warning #1786: function "sprintf" (declared at line 366 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sprintf(tprefix,"fas_levels_%d_",(int)fas->level); ^ grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/fas/ftn-auto fasf.c fasfuncf.c fasgalerkinf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/gs snesgs.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/gs/ftn-auto snesgsf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/ms ms.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/nasm nasm.c aspin.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/impls/nasm/ftn-auto nasmf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/examples/tutorials/ex10d libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/utils dmsnes.c dmdasnes.c dmlocalsnes.c dmplexsnes.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/utils/mesh dmmeshsnes.c C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(20): error: identifier "ALE" is undefined ALE::Obj m; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(20): error: expected an expression ALE::Obj m; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(24): error: identifier "DMMeshLocalFunction1" is undefined DMMeshLocalFunction1 lf; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(25): error: identifier "DMMeshLocalJacobian1" is undefined DMMeshLocalJacobian1 lj; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(52): error: identifier "ALE" is undefined ALE::Obj m; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(52): error: expected an expression ALE::Obj m; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(58): error: expected an identifier PetscErrorCode (*restrictClosure)(SectionReal,int,PetscScalar**); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(58): error: expected a ")" PetscErrorCode (*restrictClosure)(SectionReal,int,PetscScalar**); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(59): error: expected an identifier PetscErrorCode (*update)(SectionReal,int,const PetscScalar*,InsertMode); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(59): error: expected an identifier PetscErrorCode (*update)(SectionReal,int,const PetscScalar*,InsertMode); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(59): error: expected a ")" PetscErrorCode (*update)(SectionReal,int,const PetscScalar*,InsertMode); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(64): error: identifier "ALE" is undefined ALE::Obj s; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(64): error: expected an expression ALE::Obj s; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(65): error: identifier "ALE" is undefined ALE::Obj b; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(65): error: expected an expression ALE::Obj b; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(74): error: expected an identifier PetscErrorCode (*restrictClosure)(SectionInt,int,PetscInt**); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(74): error: expected a ")" PetscErrorCode (*restrictClosure)(SectionInt,int,PetscInt**); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(75): error: expected an identifier PetscErrorCode (*update)(SectionInt,int,const PetscInt*,InsertMode); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(75): error: expected an identifier PetscErrorCode (*update)(SectionInt,int,const PetscInt*,InsertMode); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(75): error: expected a ")" PetscErrorCode (*update)(SectionInt,int,const PetscInt*,InsertMode); ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(80): error: identifier "ALE" is undefined ALE::Obj s; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(80): error: expected an expression ALE::Obj s; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(81): error: identifier "ALE" is undefined ALE::Obj b; ^ C:\CYGWIN~1\PETSC-~1.3\include\petsc-private/meshimpl.h(81): error: expected an expression ALE::Obj b; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(6): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationCreate(DM dm, DMMeshInterpolationInfo *ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(13): error: incomplete type is not allowed ierr = PetscMalloc(sizeof(struct _DMMeshInterpolationInfo), ctx);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(13): error: incomplete type is not allowed ierr = PetscMalloc(sizeof(struct _DMMeshInterpolationInfo), ctx);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(26): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationSetDim(DM dm, PetscInt dim, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(37): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationGetDim(DM dm, PetscInt *dim, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(48): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationSetDof(DM dm, PetscInt dof, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(59): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationGetDof(DM dm, PetscInt *dof, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(70): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationAddPoints(DM dm, PetscInt n, PetscReal points[], DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(86): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationSetUp(DM dm, DMMeshInterpolationInfo ctx, PetscBool redundantPoints) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(88): error: expected an expression ALE::Obj m; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(89): error: declaration may not appear after executable statement in block MPI_Comm comm; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(90): error: declaration may not appear after executable statement in block PetscScalar *a; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(91): error: declaration may not appear after executable statement in block PetscInt p, q, i; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(92): error: declaration may not appear after executable statement in block PetscMPIInt rank, size; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(93): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(100): error: identifier "m" is undefined ierr = DMMeshGetMesh(dm, m);CHKERRQ(ierr); ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(104): error: declaration may not appear after executable statement in block PetscLayout layout; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(105): error: declaration may not appear after executable statement in block PetscReal *globalPoints; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(106): error: declaration may not appear after executable statement in block const PetscInt *ranges; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(107): error: declaration may not appear after executable statement in block PetscMPIInt *counts, *displs; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(108): error: declaration may not appear after executable statement in block PetscInt *foundCells; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(109): error: declaration may not appear after executable statement in block PetscMPIInt *foundProcs, *globalProcs; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(110): error: declaration may not appear after executable statement in block PetscInt n = ctx->nInput, N; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(88): warning #177: label "ALE" was declared but never referenced ALE::Obj m; ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(170): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationGetCoordinates(DM dm, Vec *coordinates, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(182): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationGetVector(DM dm, Vec *v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(199): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationRestoreVector(DM dm, Vec *v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(213): error: identifier "SectionReal" is undefined PETSC_STATIC_INLINE PetscErrorCode DMMeshInterpolate_Simplex_Private(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(213): error: identifier "DMMeshInterpolationInfo" is undefined PETSC_STATIC_INLINE PetscErrorCode DMMeshInterpolate_Simplex_Private(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(336): error: identifier "SectionReal" is undefined PETSC_STATIC_INLINE PetscErrorCode DMMeshInterpolate_Quad_Private(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(336): error: identifier "DMMeshInterpolationInfo" is undefined PETSC_STATIC_INLINE PetscErrorCode DMMeshInterpolate_Quad_Private(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(557): error: identifier "SectionReal" is undefined PETSC_STATIC_INLINE PetscErrorCode DMMeshInterpolate_Hex_Private(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(557): error: identifier "DMMeshInterpolationInfo" is undefined PETSC_STATIC_INLINE PetscErrorCode DMMeshInterpolate_Hex_Private(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(645): error: identifier "SectionReal" is undefined PetscErrorCode DMMeshInterpolationEvaluate(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(645): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationEvaluate(DM dm, SectionReal x, Vec v, DMMeshInterpolationInfo ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c(678): error: identifier "DMMeshInterpolationInfo" is undefined PetscErrorCode DMMeshInterpolationDestroy(DM dm, DMMeshInterpolationInfo *ctx) ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\snes\utils\mesh\dmmeshsnes.c (code 2) /usr/bin/ar: dmmeshsnes.o: No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/utils/ftn-custom zdmdasnesf.c zdmlocalsnesf.c zdmsnesf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/f90-mod C:\CYGWIN~1\PETSC-~1.3\src\snes\f90-mod\petscsnesmod.F(4): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCKSPDEF] use petsckspdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\snes\f90-mod\petscsnesmod.F(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCSNESDEF] use petscsnesdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\snes\f90-mod\petscsnesmod.F(11): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCKSP] use petscksp ------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\snes\f90-mod\petscsnesmod.F (code 1) /usr/bin/ar: petscsnesmod.o: No such file or directory cp: *.mod: No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/interface linesearch.c linesearchregi.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/interface/ftn-auto linesearchf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/interface/ftn-custom zlinesearchf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/basic linesearchbasic.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/l2 linesearchl2.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/cp linesearchcp.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/shell linesearchshell.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/shell/ftn-custom zlinesearchshellf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/bt linesearchbt.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/snes/linesearch/impls/bt/ftn-auto linesearchbtf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/interface ts.c C:\CYGWIN~1\PETSC-~1.3\src\ts\INTERF~1\ts.c(275): warning #1786: function "sscanf" (declared at line 324 of "c:\Program Files (x86)\Microsoft Visual Studio 9.0\VC\INCLUDE\stdio.h") was declared "deprecated ("This function or variable may be unsafe. Consider using sscanf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details.") " sscanf(dir+2,"%d",&ray); ^ tscreate.c tsreg.c tsregall.c dlregists.c tseig.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/interface/ftn-auto tsf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/interface/ftn-custom ztscreatef.c ztsf.c ztsregf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit/euler euler.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit/rk rk.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit/rk/ftn-auto rkf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit/ssp ssp.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit/ssp/ftn-auto sspf.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/explicit/ssp/ftn-custom zsspf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/sundials sundials.c C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(16): error: identifier "realtype" is undefined PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,booleantype jok,booleantype *jcurPtr, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(16): error: identifier "N_Vector" is undefined PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,booleantype jok,booleantype *jcurPtr, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(16): error: identifier "N_Vector" is undefined PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,booleantype jok,booleantype *jcurPtr, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(16): error: identifier "booleantype" is undefined PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,booleantype jok,booleantype *jcurPtr, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(16): error: identifier "booleantype" is undefined PetscErrorCode TSPrecond_Sundials(realtype tn,N_Vector y,N_Vector fy,booleantype jok,booleantype *jcurPtr, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(17): error: identifier "realtype" is undefined realtype _gamma,void *P_data,N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(17): error: identifier "N_Vector" is undefined realtype _gamma,void *P_data,N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(17): error: identifier "N_Vector" is undefined realtype _gamma,void *P_data,N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(17): error: identifier "N_Vector" is undefined realtype _gamma,void *P_data,N_Vector vtemp1,N_Vector vtemp2,N_Vector vtemp3) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(20): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(20): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(20): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(20): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(21): error: declaration may not appear after executable statement in block PC pc; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(22): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(23): error: declaration may not appear after executable statement in block Mat J,P; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(24): error: declaration may not appear after executable statement in block Vec yy = cvode->w1,yydot = cvode->ydot; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(25): error: declaration may not appear after executable statement in block PetscReal gm = (PetscReal)_gamma; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(26): error: declaration may not appear after executable statement in block MatStructure str = DIFFERENT_NONZERO_PATTERN; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(27): error: declaration may not appear after executable statement in block PetscScalar *y_data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(38): error: identifier "TRUE" is undefined *jcurPtr = TRUE; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(49): error: identifier "realtype" is undefined PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(49): error: identifier "N_Vector" is undefined PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(49): error: identifier "N_Vector" is undefined PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(49): error: identifier "N_Vector" is undefined PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(49): error: identifier "N_Vector" is undefined PetscErrorCode TSPSolve_Sundials(realtype tn,N_Vector y,N_Vector fy,N_Vector r,N_Vector z, ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(50): error: identifier "realtype" is undefined realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(50): error: identifier "realtype" is undefined realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(50): error: identifier "N_Vector" is undefined realtype _gamma,realtype delta,int lr,void *P_data,N_Vector vtemp) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(53): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(53): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(53): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(53): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(54): error: declaration may not appear after executable statement in block PC pc; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(55): error: declaration may not appear after executable statement in block Vec rr = cvode->w1,zz = cvode->w2; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(56): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(57): error: declaration may not appear after executable statement in block PetscScalar *r_data,*z_data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(79): error: identifier "realtype" is undefined int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(79): error: identifier "N_Vector" is undefined int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(79): error: identifier "N_Vector" is undefined int TSFunction_Sundials(realtype t,N_Vector y,N_Vector ydot,void *ctx) ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(86): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(86): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(86): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(86): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(87): error: declaration may not appear after executable statement in block Vec yy = cvode->w1,yyd = cvode->w2,yydot = cvode->ydot; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(88): error: declaration may not appear after executable statement in block PetscScalar *y_data,*ydot_data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(89): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(122): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(122): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(122): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(122): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(123): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(124): error: declaration may not appear after executable statement in block PetscInt flag; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(125): error: declaration may not appear after executable statement in block long int its,nsteps; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(126): error: declaration may not appear after executable statement in block realtype t,tout; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(126): error: identifier "realtype" is undefined realtype t,tout; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(127): error: declaration may not appear after executable statement in block PetscScalar *y_data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(128): error: declaration may not appear after executable statement in block void *mem; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(134): error: identifier "realtype" is undefined N_VSetArrayPointer((realtype*)y_data,cvode->y); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(134): error: expected an expression N_VSetArrayPointer((realtype*)y_data,cvode->y); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(134): error: expected a ")" N_VSetArrayPointer((realtype*)y_data,cvode->y); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(141): error: identifier "CV_ONE_STEP" is undefined if (cvode->monitorstep) flag = CVode(mem,tout,cvode->y,&t,CV_ONE_STEP); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(142): error: identifier "CV_NORMAL" is undefined else flag = CVode(mem,tout,cvode->y,&t,CV_NORMAL); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(146): error: identifier "CV_ILL_INPUT" is undefined case CV_ILL_INPUT: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(149): error: identifier "CV_TOO_CLOSE" is undefined case CV_TOO_CLOSE: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(152): error: identifier "CV_TOO_MUCH_WORK" is undefined case CV_TOO_MUCH_WORK: { ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(158): error: identifier "CV_TOO_MUCH_ACC" is undefined case CV_TOO_MUCH_ACC: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(161): error: identifier "CV_ERR_FAILURE" is undefined case CV_ERR_FAILURE: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(164): error: identifier "CV_CONV_FAILURE" is undefined case CV_CONV_FAILURE: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(167): error: identifier "CV_LINIT_FAIL" is undefined case CV_LINIT_FAIL: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(170): error: identifier "CV_LSETUP_FAIL" is undefined case CV_LSETUP_FAIL: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(173): error: identifier "CV_LSOLVE_FAIL" is undefined case CV_LSOLVE_FAIL: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(176): error: identifier "CV_RHSFUNC_FAIL" is undefined case CV_RHSFUNC_FAIL: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(179): error: identifier "CV_FIRST_RHSFUNC_ERR" is undefined case CV_FIRST_RHSFUNC_ERR: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(182): error: identifier "CV_REPTD_RHSFUNC_ERR" is undefined case CV_REPTD_RHSFUNC_ERR: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(185): error: identifier "CV_UNREC_RHSFUNC_ERR" is undefined case CV_UNREC_RHSFUNC_ERR: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(188): error: identifier "CV_RTFUNC_FAIL" is undefined case CV_RTFUNC_FAIL: ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(218): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(218): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(218): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(218): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(219): error: declaration may not appear after executable statement in block N_Vector y; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(219): error: identifier "N_Vector" is undefined N_Vector y; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(220): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(221): error: declaration may not appear after executable statement in block PetscScalar *x_data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(222): error: declaration may not appear after executable statement in block PetscInt glosize,locsize; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(234): error: identifier "realtype" is undefined N_VSetArrayPointer((realtype*)x_data,y); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(234): error: expected an expression N_VSetArrayPointer((realtype*)x_data,y); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(234): error: expected a ")" N_VSetArrayPointer((realtype*)x_data,y); ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(244): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(244): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(244): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(244): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(245): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(260): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(260): error: identifier "cvode" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(260): error: expected an expression TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(260): error: expected a ";" TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(261): error: declaration may not appear after executable statement in block PetscErrorCode ierr; ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c(284): error: identifier "TS_Sundials" is undefined TS_Sundials *cvode = (TS_Sundials*)ts->data; ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\sundials.c (code 4) /usr/bin/ar: sundials.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/sundials/ftn-auto sundialsf.c C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\ftn-auto\sundialsf.c(82): error: identifier "TSSundialsLmmType" is undefined void PETSC_STDCALL tssundialssettype_(TS ts,TSSundialsLmmType *type, int *__ierr ){ ^ C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\ftn-auto\sundialsf.c(94): error: identifier "TSSundialsGramSchmidtType" is undefined void PETSC_STDCALL tssundialssetgramschmidttype_(TS ts,TSSundialsGramSchmidtType *type, int *__ierr ){ ^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ts\impls\implicit\sundials\ftn-auto\sundialsf.c (code 2) /usr/bin/ar: sundialsf.o: No such file or directory grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/sundials/ftn-custom zsundialsf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/theta theta.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/theta/ftn-auto thetaf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/alpha alpha.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/alpha/ftn-auto alphaf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/implicit/gl gl.c gladapt.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/pseudo posindep.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/pseudo/ftn-auto posindepf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/python pythonts.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/python/ftn-custom zpythontf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/arkimex arkimex.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/arkimex/ftn-custom zarkimexf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/rosw rosw.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/rosw/ftn-custom zroswf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/impls/eimex eimex.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/examples/tests libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/examples/tutorials/phasefield libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/examples/tutorials/advection-diffusion-reaction grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/f90-mod C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(4): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCSNESDEF] use petscsnesdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(10): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCTSDEF] use petsctsdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(11): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCSNES] use petscsnes ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(19): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDADEF] use petscdmdadef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(20): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMMESHDEF] use petscdmmeshdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(21): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCTSDEF] use petsctsdef ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(25): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMDA] use petscdmda ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(26): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMADDA] use petscdmadda ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(27): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMCOMPOSITE] use petscdmcomposite ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(28): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCDMMESH] use petscdmmesh ------------^ C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F(29): error #7002: Error in opening the compiled module file. Check INCLUDE paths. [PETSCTS] use petscts ------------^ compilation aborted for C:\CYGWIN~1\PETSC-~1.3\src\ts\f90-mod\petsctsmod.F (code 1) /usr/bin/ar: petsctsmod.o: No such file or directory cp: *.mod: No such file or directory /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:168: recipe for target 'modcopy' failed make[7]: *** [modcopy] Error 1 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:161: recipe for target 'buildmodfast' failed make[6]: *** [buildmodfast] Error 2 /cygdrive/c/cygwin_cache/petsc-3.4.3/conf/rules:130: recipe for target 'libfast' failed make[5]: [libfast] Error 2 (ignored) libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic/interface characteristic.c mocregis.c slregis.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic/interface/ftn-auto characteristicf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic/impls/da slda.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic/examples libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/characteristic/examples/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt/interface tsadapt.c grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt/interface/ftn-auto tsadaptf.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt/impls libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt/impls/basic adaptbasic.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt/impls/cfl adaptcfl.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/adapt/impls/none adaptnone.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/ts/utils dmts.c dmdats.c libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/contrib libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/contrib/fun3d libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/contrib/fun3d/comp libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/contrib/fun3d/incomp libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/src/benchmarks libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/include grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/include/finclude grep: Cannot open file '/dev/fs/C/cygdrive/c/cygwin_cache/petsc-3.4.3/arch-mswin-c-opt/include/petscconf.h': No such file or directory libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/include/finclude/ftn-auto libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/include/finclude/ftn-custom libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/include/petsc-private libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/include/sieve libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/tutorials libfast in: /cygdrive/c/cygwin_cache/petsc-3.4.3/tutorials/python Completed building libraries ========================================= **************************ERROR************************************ Error during compile, check arch-mswin-c-opt/conf/make.log Send it and arch-mswin-c-opt/conf/configure.log to petsc-maint@mcs.anl.gov ********************************************************************