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<div class="moz-cite-prefix">Hello everybody,<br>
unfortunately building petsc without fortran cannot work for me
because I need MUMPs that requires Scalapack that needs fortran. I
played with the options. As result the configuration runs okay,
the build gives an error that does not seem to be related to
fortran:<br>
<br>
[ 0%] Building CXX object
CMakeFiles/petscsys.dir/src/sys/totalview/tv_data_display.c.o<br>
Building Fortran object
CMakeFiles/petscsys.dir/src/sys/f90-mod/petscsysmod.F.o<br>
Building CXX object
CMakeFiles/petscsys.dir/src/sys/python/pythonsys.c.o<br>
[ 0%] /usr/include/c++/4.7/bits/stl_algobase.h(60): catastrophic
error: cannot open source file "bits/c++config.h"<br>
#include <bits/c++config.h><br>
^<br>
<br>
/usr/include/c++/4.7/bits/stl_algobase.h(60): catastrophic error:
cannot open source file "bits/c++config.h"<br>
#include <bits/c++config.h><br>
^<br>
<br>
compilation aborted for
/home/mpovolot/Code_intel/libs/petsc/build-real/src/sys/info/verboseinfo.c
(code 4)<br>
compilation aborted for
/home/mpovolot/Code_intel/libs/petsc/build-real/src/sys/logging/plog.c
(code 4)<br>
<br>
I attach here the log files.<br>
Any advise is highly appreciated.<br>
Michael.<br>
<br>
On 7/9/2013 4:34 PM, Matthew Knepley wrote:<br>
</div>
<blockquote
cite="mid:CAMYG4G=YisY4aE3U47CSO=go1oPpzjnoHckHbu9te8SCYuh-mw@mail.gmail.com"
type="cite">
<div dir="ltr">On Tue, Jul 9, 2013 at 3:32 PM, Michael Povolotskyi
<span dir="ltr"><<a moz-do-not-send="true"
href="mailto:mpovolot@purdue.edu" target="_blank">mpovolot@purdue.edu</a>></span>
wrote:<br>
<div class="gmail_extra">
<div class="gmail_quote">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">If I do
not need to use petsc in fortran programs, can I build
petsc without fortran and thus avoid this situation?<br>
Michael.<br>
<br>
<br>
On 07/09/2013 04:31 PM, Satish Balay wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
For some reason this issue comes up with mpi.mod
provided by intel<br>
mpi.<br>
<br>
We have a configure test for it - but looks like its not
sufficient to<br>
catch this issue.<br>
<br>
satish<br>
<br>
<br>
On Tue, 9 Jul 2013, Matthew Knepley wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
On Tue, Jul 9, 2013 at 3:11 PM, Michael Povolotskyi
<<a moz-do-not-send="true"
href="mailto:mpovolot@purdue.edu" target="_blank">mpovolot@purdue.edu</a>>wrote:<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear Petsc users and developers,<br>
I'm trying to build petsc with Intel compiler.<br>
<br>
</blockquote>
1) First, ask yourself whether you really want to
build with the Intel<br>
compiler. Then ask again.<br>
<br>
2) Do you need Fortran? If not, turn it off
--with-fc=0.<br>
</blockquote>
</blockquote>
</blockquote>
<div>
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^</div>
<div><br>
</div>
<div style=""> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
3) If you want Fortran and Intel (and have a hatred of
free time), try the<br>
legacy build<br>
<br>
make all-legacy<br>
<br>
4) If this is still broken, send the new make.log<br>
<br>
Thanks,<br>
<br>
Matt<br>
<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
The configuration process runs okay (I attach the
log here),<br>
but I get an error when I build it:<br>
-- Configuring done<br>
-- Generating done<br>
-- Build files have been written to:
/home/mpovolot/Code_intel/**<br>
libs/petsc/build-real/linux<br>
Scanning dependencies of target petscsys<br>
[ 0%] [ 0%] [ 0%] Building CXX object
CMakeFiles/petscsys.dir/src/**<br>
sys/info/verboseinfo.c.o<br>
Building Fortran object
CMakeFiles/petscsys.dir/src/**<br>
sys/f90-mod/petscsysmod.F.o<br>
Building CXX object CMakeFiles/petscsys.dir/src/**<br>
sys/totalview/tv_data_display.**c.o<br>
Building CXX object CMakeFiles/petscsys.dir/src/**sys/python/pythonsys.c.o<br>
Building CXX object CMakeFiles/petscsys.dir/src/**sys/logging/plog.c.o<br>
/home/mpovolot/Code_intel/**libs/petsc/build-real/src/sys/**<br>
f90-mod/petscsysmod.F:6.11:<br>
<br>
use mpi<br>
1<br>
Fatal Error: File 'mpi.mod' opened at (1) is not a
GFORTRAN module file<br>
make[6]: *** [CMakeFiles/petscsys.dir/src/**sys/f90-mod/petscsysmod.F.o]<br>
Error 1<br>
make[6]: *** Waiting for unfinished jobs....<br>
make[5]: *** [CMakeFiles/petscsys.dir/all] Error 2<br>
make[4]: *** [all] Error 2<br>
make[3]: *** [ccmake] Error 2<br>
make[2]: *** [cmake] Error 2<br>
****************************ERROR**************************************<br>
Error during compile, check linux/conf/make.log<br>
Send it and linux/conf/configure.log to <a
moz-do-not-send="true"
href="mailto:petsc-maint@mcs.anl.gov"
target="_blank">petsc-maint@mcs.anl.gov</a><br>
************************************************************************<br>
<br>
I attach here the make.log<br>
What is strange to me that it has something to do
with Gfortran, while I<br>
want to build everything with Intel.<br>
Thank you for help,<br>
Michael.<br>
<br>
--<br>
Michael Povolotskyi, PhD<br>
Research Assistant Professor<br>
Network for Computational Nanotechnology<br>
207 S Martin Jischke Drive<br>
Purdue University, DLR, room 441-10<br>
West Lafayette, Indiana 47907<br>
<br>
phone: <a moz-do-not-send="true"
href="tel:%2B1-765-494-9396" value="+17654949396"
target="_blank">+1-765-494-9396</a><br>
fax: <a moz-do-not-send="true"
href="tel:%2B1-765-496-6026" value="+17654966026"
target="_blank">+1-765-496-6026</a><br>
<br>
<br>
</blockquote>
<br>
<br>
</blockquote>
</blockquote>
<br>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
What most experimenters take for granted before they begin
their experiments is infinitely more interesting than any
results to which their experiments lead.<br>
-- Norbert Wiener
</div>
</div>
</blockquote>
<br>
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