Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Mon Jul 1 15:30:56 2013 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-debugging=0 --with-cc=/opt/cray/xt-asyncpe/5.19/bin/cc --with-fc=/opt/cray/xt-asyncpe/5.19/bin/ftn --with-mpiexec=aprun --download-metis=1 --download-parmetis=1 --prefix=/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib Working directory: /global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source Machine platform: ('Linux', 'hopper05', '2.6.32.36-0.5-default', '#1 SMP 2011-04-14 10:12:31 +0200', 'x86_64', 'x86_64') Python version: 2.7.3 (default, Jan 29 2013, 19:33:40) [GCC 4.7.1 20120614 (Cray Inc.)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/common/usg/mercurial/1.8.1/bin/gdb...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/gdb...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/gdb...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/gdb...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/gdb...not found Checking for program /usr/common/usg/python/2.7.3/bin/gdb...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/gdb...not found Checking for program /opt/cray/atp/1.6.2/bin/gdb...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/gdb...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/gdb...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/gdb...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/gdb...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/gdb...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/gdb...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/gdb...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/gdb...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/gdb...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/gdb...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/gdb...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/gdb...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/gdb...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/gdb...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/gdb...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/gdb...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/gdb...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/gdb...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/gdb...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/gdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/gdb...not found Checking for program /opt/gcc/4.7.2/bin/gdb...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/gdb...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/gdb...not found Checking for program /usr/common/usg/altd/1.0/bin/gdb...not found Checking for program /usr/common/usg/bin/gdb...not found Checking for program /usr/common/mss/bin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /opt/moab/7.2.3-r19/bin/gdb...not found Checking for program /opt/moab/7.2.3-r19/sbin/gdb...not found Checking for program /opt/torque/4.2.3.1/sbin/gdb...not found Checking for program /opt/torque/4.2.3.1/bin/gdb...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/gdb...not found Checking for program /usr/syscom/nsg/sbin/gdb...not found Checking for program /usr/common/nsg/sbin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /usr/syscom/nsg/bin/gdb...not found Checking for program /opt/modules/3.2.6.6/bin/gdb...not found Checking for program /usr/lpp/mmfs/bin/gdb...not found Checking for program /global/homes/g/gpau/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/common/usg/mercurial/1.8.1/bin/dbx...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/dbx...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/dbx...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/dbx...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/dbx...not found Checking for program /usr/common/usg/python/2.7.3/bin/dbx...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/dbx...not found Checking for program /opt/cray/atp/1.6.2/bin/dbx...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/dbx...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/dbx...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/dbx...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/dbx...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/dbx...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/dbx...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/dbx...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/dbx...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/dbx...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/dbx...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/dbx...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/dbx...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/dbx...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/dbx...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/dbx...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/dbx...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/dbx...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/dbx...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/dbx...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/dbx...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/dbx...not found Checking for program /opt/gcc/4.7.2/bin/dbx...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/dbx...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/dbx...not found Checking for program /usr/common/usg/altd/1.0/bin/dbx...not found Checking for program /usr/common/usg/bin/dbx...not found Checking for program /usr/common/mss/bin/dbx...not found Checking for program /usr/common/nsg/bin/dbx...not found Checking for program /opt/moab/7.2.3-r19/bin/dbx...not found Checking for program /opt/moab/7.2.3-r19/sbin/dbx...not found Checking for program /opt/torque/4.2.3.1/sbin/dbx...not found Checking for program /opt/torque/4.2.3.1/bin/dbx...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/dbx...not found Checking for program /usr/syscom/nsg/sbin/dbx...not found Checking for program /usr/common/nsg/sbin/dbx...not found Checking for program /usr/common/nsg/bin/dbx...not found Checking for program /usr/syscom/nsg/bin/dbx...not found Checking for program /opt/modules/3.2.6.6/bin/dbx...not found Checking for program /usr/lpp/mmfs/bin/dbx...not found Checking for program /global/homes/g/gpau/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /usr/lib/mit/bin/dbx...not found Checking for program /usr/lib/mit/sbin/dbx...not found Checking for program /opt/cray/bin/dbx...not found Checking for program /global/homes/g/gpau/dbx...not found Checking for program /usr/common/usg/mercurial/1.8.1/bin/xdb...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/xdb...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/xdb...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/xdb...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/xdb...not found Checking for program /usr/common/usg/python/2.7.3/bin/xdb...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/xdb...not found Checking for program /opt/cray/atp/1.6.2/bin/xdb...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/xdb...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/xdb...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/xdb...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/xdb...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/xdb...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/xdb...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/xdb...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/xdb...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/xdb...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/xdb...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/xdb...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/xdb...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/xdb...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/xdb...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/xdb...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/xdb...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/xdb...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/xdb...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/xdb...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/xdb...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/xdb...not found Checking for program /opt/gcc/4.7.2/bin/xdb...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/xdb...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/xdb...not found Checking for program /usr/common/usg/altd/1.0/bin/xdb...not found Checking for program /usr/common/usg/bin/xdb...not found Checking for program /usr/common/mss/bin/xdb...not found Checking for program /usr/common/nsg/bin/xdb...not found Checking for program /opt/moab/7.2.3-r19/bin/xdb...not found Checking for program /opt/moab/7.2.3-r19/sbin/xdb...not found Checking for program /opt/torque/4.2.3.1/sbin/xdb...not found Checking for program /opt/torque/4.2.3.1/bin/xdb...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/xdb...not found Checking for program /usr/syscom/nsg/sbin/xdb...not found Checking for program /usr/common/nsg/sbin/xdb...not found Checking for program /usr/common/nsg/bin/xdb...not found Checking for program /usr/syscom/nsg/bin/xdb...not found Checking for program /opt/modules/3.2.6.6/bin/xdb...not found Checking for program /usr/lpp/mmfs/bin/xdb...not found Checking for program /global/homes/g/gpau/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /usr/lib/mit/bin/xdb...not found Checking for program /usr/lib/mit/sbin/xdb...not found Checking for program /opt/cray/bin/xdb...not found Checking for program /global/homes/g/gpau/xdb...not found Checking for program /usr/common/usg/mercurial/1.8.1/bin/dsymutil...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/dsymutil...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/dsymutil...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/dsymutil...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/dsymutil...not found Checking for program /usr/common/usg/python/2.7.3/bin/dsymutil...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/dsymutil...not found Checking for program /opt/cray/atp/1.6.2/bin/dsymutil...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/dsymutil...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/dsymutil...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/dsymutil...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/dsymutil...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/dsymutil...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/dsymutil...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/dsymutil...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/dsymutil...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/dsymutil...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/dsymutil...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/dsymutil...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/dsymutil...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/dsymutil...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/dsymutil...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/dsymutil...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/dsymutil...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/dsymutil...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/dsymutil...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/dsymutil...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/dsymutil...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/dsymutil...not found Checking for program /opt/gcc/4.7.2/bin/dsymutil...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/dsymutil...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/dsymutil...not found Checking for program /usr/common/usg/altd/1.0/bin/dsymutil...not found Checking for program /usr/common/usg/bin/dsymutil...not found Checking for program /usr/common/mss/bin/dsymutil...not found Checking for program /usr/common/nsg/bin/dsymutil...not found Checking for program /opt/moab/7.2.3-r19/bin/dsymutil...not found Checking for program /opt/moab/7.2.3-r19/sbin/dsymutil...not found Checking for program /opt/torque/4.2.3.1/sbin/dsymutil...not found Checking for program /opt/torque/4.2.3.1/bin/dsymutil...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/dsymutil...not found Checking for program /usr/syscom/nsg/sbin/dsymutil...not found Checking for program /usr/common/nsg/sbin/dsymutil...not found Checking for program /usr/common/nsg/bin/dsymutil...not found Checking for program /usr/syscom/nsg/bin/dsymutil...not found Checking for program /opt/modules/3.2.6.6/bin/dsymutil...not found Checking for program /usr/lpp/mmfs/bin/dsymutil...not found Checking for program /global/homes/g/gpau/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/X11/dsymutil...not found Checking for program /usr/X11R6/bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /usr/lib/mit/bin/dsymutil...not found Checking for program /usr/lib/mit/sbin/dsymutil...not found Checking for program /opt/cray/bin/dsymutil...not found Checking for program /global/homes/g/gpau/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/languages.py:28) TESTING: configureCLanguage from PETSc.utilities.languages(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/languages.py:28) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/languages.py:37) TESTING: configureFortranLanguage from PETSc.utilities.languages(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/languages.py:37) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMake from config.programs(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/programs.py:24) TESTING: configureMake from config.programs(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/programs.py:24) Check various things about make Checking for program /usr/common/usg/mercurial/1.8.1/bin/make...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/make...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/make...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/make...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/make...not found Checking for program /usr/common/usg/python/2.7.3/bin/make...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/make...not found Checking for program /opt/cray/atp/1.6.2/bin/make...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/make...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/make...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/make...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/make...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/make...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/make...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/make...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/make...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/make...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/make...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/make...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/make...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/make...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/make...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/make...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/make...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/make...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/make...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/make...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/make...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/make...not found Checking for program /opt/gcc/4.7.2/bin/make...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/make...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/make...not found Checking for program /usr/common/usg/altd/1.0/bin/make...not found Checking for program /usr/common/usg/bin/make...not found Checking for program /usr/common/mss/bin/make...not found Checking for program /usr/common/nsg/bin/make...not found Checking for program /opt/moab/7.2.3-r19/bin/make...not found Checking for program /opt/moab/7.2.3-r19/sbin/make...not found Checking for program /opt/torque/4.2.3.1/sbin/make...not found Checking for program /opt/torque/4.2.3.1/bin/make...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/make...not found Checking for program /usr/syscom/nsg/sbin/make...not found Checking for program /usr/common/nsg/sbin/make...not found Checking for program /usr/common/nsg/bin/make...not found Checking for program /usr/syscom/nsg/bin/make...not found Checking for program /opt/modules/3.2.6.6/bin/make...not found Checking for program /usr/lpp/mmfs/bin/make...not found Checking for program /global/homes/g/gpau/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/common/usg/mercurial/1.8.1/bin/strings...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/strings...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/strings...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/strings...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/strings...not found Checking for program /usr/common/usg/python/2.7.3/bin/strings...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/strings...not found Checking for program /opt/cray/atp/1.6.2/bin/strings...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/strings...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/strings...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/strings...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/strings...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/strings...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/strings...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/strings...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/strings...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/strings...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/strings...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/strings...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/strings...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/strings...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/strings...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/strings...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/strings...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/strings...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/strings...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/strings...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/strings...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/strings...not found Checking for program /opt/gcc/4.7.2/bin/strings...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/strings...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/strings...not found Checking for program /usr/common/usg/altd/1.0/bin/strings...not found Checking for program /usr/common/usg/bin/strings...not found Checking for program /usr/common/mss/bin/strings...not found Checking for program /usr/common/nsg/bin/strings...not found Checking for program /opt/moab/7.2.3-r19/bin/strings...not found Checking for program /opt/moab/7.2.3-r19/sbin/strings...not found Checking for program /opt/torque/4.2.3.1/sbin/strings...not found Checking for program /opt/torque/4.2.3.1/bin/strings...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/strings...not found Checking for program /usr/syscom/nsg/sbin/strings...not found Checking for program /usr/common/nsg/sbin/strings...not found Checking for program /usr/common/nsg/bin/strings...not found Checking for program /usr/syscom/nsg/bin/strings...not found Checking for program /opt/modules/3.2.6.6/bin/strings...not found Checking for program /usr/lpp/mmfs/bin/strings...not found Checking for program /global/homes/g/gpau/bin/strings...not found Checking for program /usr/bin/strings...found Defined make macro "STRINGS" to "/usr/bin/strings" sh: /usr/bin/strings /usr/bin/make Executing: /usr/bin/strings /usr/bin/make sh: /lib64/ld-linux-x86-64.so.2 SuSESuSE librt.so.1 __gmon_start__ _Jv_RegisterClasses clock_gettime libc.so.6 fflush strcpy __rawmemchr __printf_chk fnmatch readdir _IO_putc setlocale fopen strsignal strncmp optind strrchr wait pipe __strdup dcgettext closedir sigprocmask __stack_chk_fail __lxstat unlink realloc abort stdin _exit getpid kill __assert_fail mkstemp strtod strtol feof getloadavg fgets getpwnam calloc strlen sigemptyset memset glob strstr __errno_location chdir dup2 __fprintf_chk sigaddset ctime putenv stdout fputs lseek memcpy fclose malloc remove __strncpy_chk opendir getenv __ctype_b_loc sscanf optarg stderr alarm getlogin readlink setrlimit getopt_long execvp __fxstat __realpath_chk getcwd fwrite fread gettimeofday sigaction waitpid localtime strchr vfork __vfprintf_chk fdopen qsort __strcpy_chk __ctype_tolower_loc setvbuf fcntl __sprintf_chk bsd_signal __xstat getrlimit memmove bindtextdomain opterr strcmp strerror __libc_start_main ferror globfree __environ __cxa_atexit GLIBC_2.2.5 GLIBC_2.4 GLIBC_2.3 GLIBC_2.3.4 5B^" %D^" %B^" %:^" %2^" %*^" %"^" %z]" %r]" %j]" %b]" %Z]" %R]" %J]" %B]" %:]" %2]" %*]" %"]" %z\" %r\" %j\" %b\" %Z\" %R\" %J\" %B\" %:\" %2\" %*\" %"\" %z[" %r[" %j[" %b[" %Z[" %R[" %J[" %B[" %:[" %2[" %*[" %"[" fff. ATSH t^F" -3F" []A\A] AVAUI ATUSH t$0I D$(I ->E" H[]A\A]A^A_ H[]A\A]A^ D$$I |$(H t$0H D$$f D$$H |$(f L;l$ t=H;-FC" L;%QB" D$hu ffffff. AVAUATUSH H9T$ []A\A]A^A_ =.C" l$ H AWAVAUATSH [A\A]A^A_ =Z;" ffff. L;%s;" []A\A] []A\A] []A\A] ffffff. StZH D$ H D$ H E(@t+ U(E1 E(u^H =[." \$(H l$0L d$8L l$@L t$HH |$PH %{8" fffff. ATSH %A-" D$ Hi L;d$ I \$(H l$0L d$8L l$@L t$HL |$PH H9D$ wPIc L9d$ 5L*" |$0H 5 )" D$81 \$0H \$8H t$@H |$ H |$PH D$8dH3 @[]A\ D$81 T$8dH3 \$@H l$HL d$PH ffff. %R!" l$ L t$(L |$0H l$ L t$(L |$0H AWAVI AUATUSH E@I;E@v []A\A]A^A_ fff. fffff. H;-Q <.u1 t% ARFILENAMES/ # commands to execute (built-in): (from `%s', line %lu): %.*s *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: kill $(MAKE) ${MAKE} .SUFFIXES *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted ARFLAGS CHECKOUT,v COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi CWEAVE cweave CTANGLE ctangle rm -f LINK.o COMPILE.c LINK.c COMPILE.cc COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t COMPILE.f LINK.f COMPILE.F LINK.F COMPILE.r LINK.r COMPILE.def COMPILE.mod COMPILE.p LINK.p LINK.s COMPILE.s LINK.S COMPILE.S PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F PREPROCESS.r LINT.c OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% SCCS/s.% $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o .cc.o .C.o .cpp.o .f.o .p.o .F.o .r.o .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln .l.ln .y.c .l.c @$(RM) $@ $(LEX.l) $< > $@ .F.f .r.f .l.r .S.s $(PREPROCESS.S) $< > $@ .texinfo.info .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) $(CC) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) $(AS) $(ASFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(COMPILE.c) $(OUTPUT_OPTION) $< $(COMPILE.cc) $(OUTPUT_OPTION) $< $(COMPILE.C) $(OUTPUT_OPTION) $< $(COMPILE.cpp) $(OUTPUT_OPTION) $< $(COMPILE.f) $(OUTPUT_OPTION) $< $(COMPILE.p) $(OUTPUT_OPTION) $< $(COMPILE.F) $(OUTPUT_OPTION) $< $(COMPILE.r) $(OUTPUT_OPTION) $< $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c $(YACC.y) $< mv -f y.tab.c $@ $(PREPROCESS.F) $(OUTPUT_OPTION) $< $(PREPROCESS.r) $(OUTPUT_OPTION) $< $(LEX.l) $< > $@ mv -f lex.yy.r $@ $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< # Directories # %s: could not be stat'd. files, impossibilities so far. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): impossibilities in %lu directories. unterminated variable reference warning: undefined variable `%.*s' Recursive variable `%s' references itself (eventually) # Files # files hash-table stats: %04d-%02d-%02d %02d:%02d:%02d .%09d # Not a target: %s:%s | %s # Command-line target. # Also makes: # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Successfully updated. file.c question_flag # Failed to be updated. Current time *name != '\0' .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Modification time never checked. # Commands currently running (THIS IS A BUG). # Dependencies commands running (THIS IS A BUG). # Needs to be updated (-q is set). # Invalid value in `update_status' member! # Invalid value in `command_state' member! %s: Timestamp out of range; substituting %s *** Deleting intermediate file `%s' Removing intermediate files... Commands were specified for file `%s' at %s:%lu, Commands for file `%s' were found by implicit rule search, but `%s' is now considered the same file as `%s'. Commands for `%s' will be ignored in favor of those for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' print_file enter_file lookup_file undefined recursive simple %s: '%s' default environment environment override command line automatic basename addprefix %s:%lu: filter abspath addsuffix notdir filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard wordlist words origin foreach call warning value eval Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible implicit prerequisite `%s'. Rejecting impossible rule prerequisite `%s'. Trying implicit prerequisite `%s'. Trying rule prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. job.c ap <= end $(SHELL) $(IFS) %s: Command not found SHELL %s: Shell program not found execvp: write jobserver /bin/sh vfork cannot enforce load limit: getloadavg (remote) [%s] Error %d (ignored) *** [%s] Error %d (core dumped) *** [%s] %s%s remote_status wait .DELETE_ON_ERROR don't Duplicate the job FD read jobs pipe Read returned EBADF. break case continue exec exit login logout read readonly shift switch test trap umask while %s (line %d) Bad shell context (!unixy && !batch_mode_shell) INTERNAL: Freeing child 0x%08lx (%s) but no tokens left! Released token for child 0x%08lx (%s). cannot enforce load limits on this operating system Estimated system load = %f (actual = %f) (max requested = %f) Putting child 0x%08lx (%s) PID %ld%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child 0x%08lx (%s) PID %ld %s Reaping losing child 0x%08lx PID %ld %s Reaping winning child 0x%08lx PID %ld %s Cleaning up temp batch file %s Removing child 0x%08lx PID %ld%s from chain. Need a job token; we %shave children INTERNAL: no children as we go to sleep on read Obtained token for child 0x%08lx (%s). construct_command_argv_internal start_waiting_job ?%s: Entering directory `%s' %s: Leaving directory `%s' %sThis program built for %s write MAKECMDGOALS Options: This program built for %s MFLAGS MAKEFLAGS /usr/share/locale getcwd .VARIABLES .FEATURES archives check-symlink MAKE_RESTARTS MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR TMPDIR /tmp fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL %d,%d dup jobserver creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' was not found chdir Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u main.c unlink (temporary file): No targets Updating goal targets.... always-make basic debug environment-overrides help ignore-errors include-dir jobs jobserver-fds load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch version no-print-directory what-if warn-undefined-variables quiet stop new-file assume-new assume-old max-load dry-run recon %s: Entering an unknown directory %s: Leaving an unknown directory %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' %sGNU Make %s %sCopyright (C) 2006 Free Software Foundation, Inc. %sThis is free software; see the source for copying conditions. %sThere is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A %sPARTICULAR PURPOSE. %sThis program built for %s (%s) # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name the `-%c' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s (%s) Report bugs to target-specific order-only second-expansion else-if unknown debug level specification `%s' Makefile from standard input specified twice. internal error: multiple --jobserver-fds options internal error: invalid --jobserver-fds string `%s' warning: -jN forced in submake: disabling jobserver mode. warning: jobserver unavailable: using -j1. Add `+' to parent make rule. Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. .DEFAULT_GOAL contains more than one target No targets specified and no makefile found warning: Clock skew detected. Your build may be incomplete. Couldn't change back to original directory. -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from commands. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any commands; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no commands; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo commands. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. main %s:%lu: *** %s: *** %s[%u]: *** . Stop. virtual memory exhausted %s: %s[%u]: write error: %s write error %s%s: %s $(HOME) HOME /usr/include .INCLUDE_DIRS define endef ifdef ifndef ifeq ifneq else endif extraneous `%s' .POSIX .SECONDEXPANSION invalid syntax in conditional extraneous `endef' empty variable name empty `override' directive invalid `override' directive unexport vpath -include sinclude missing rule before commands missing separator%s read.c *p2 != '\0' v != 0 missing target pattern multiple target patterns missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/gnu/include /usr/local/include GNUmakefile Makefile warning: NUL character seen; rest of line ignored Extraneous text after `endef' directive missing `endef', unterminated `define' Extraneous text after `%s' directive only one `else' per conditional prerequisites cannot be defined in command scripts mixed implicit and static pattern rules mixed implicit and normal rules target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding commands for target `%s' warning: ignoring old commands for target `%s' commands commence before first target (did you mean TAB instead of 8 spaces?) Malformed target-specific variable definition target pattern contains no `%%' eval record_target_var lstat: readlink: $(strip $(.LIBPATTERNS)) %s/%s touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. remake.c Nothing to be done for `%s'. `%s' is up to date. /usr/lib64 /usr/lib .LIBPATTERNS element `%s' is not a pattern Warning: File `%s' has modification time %.2g s in the future %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default commands for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No commands for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. Commands of `%s' are being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 update_file_1 # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. (%.o) BUG: num_pattern_rules wrong! %u != %u %s # of strings in strcache: %d %s strcache size: total = %d / max = %d / min = %d / avg = %d %s strcache free: total = %d / max = %d / min = %d / avg = %d %s # of strcache buffers: %d strcache.c best->bytesfree > len add_string environment under -e (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) # Variables %s : variable.c %s%s%s MAKE_VERSION MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) pop_variable_scope # variable set hash-table stats: # Pattern-specific Variable Values # %u pattern-specific variable values # No pattern-specific variable values. current_variable_set_list->next != ((void *)0) 3.81 x86_64-unknown-linux-gnu # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. $(strip $(VPATH)) $(strip $(GPATH)) # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% can't allocate %ld bytes for hash table: memory exhausted .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh -c #;"*?[]&|<>(){}$`^~! Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} module multiprocessing found 16 cores: using make_np = 5 Defined make macro "MAKE_NP" to "5" ================================================================================ TEST configureMkdir from config.programs(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/programs.py:111) TESTING: configureMkdir from config.programs(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/programs.py:111) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/common/usg/mercurial/1.8.1/bin/mkdir...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/mkdir...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/mkdir...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/mkdir...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/mkdir...not found Checking for program /usr/common/usg/python/2.7.3/bin/mkdir...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/mkdir...not found Checking for program /opt/cray/atp/1.6.2/bin/mkdir...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/mkdir...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/mkdir...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/mkdir...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/mkdir...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/mkdir...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/mkdir...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/mkdir...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/mkdir...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/mkdir...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/mkdir...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/mkdir...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/mkdir...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/mkdir...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/mkdir...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/mkdir...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/mkdir...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/mkdir...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/mkdir...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/mkdir...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/mkdir...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/mkdir...not found Checking for program /opt/gcc/4.7.2/bin/mkdir...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/mkdir...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/mkdir...not found Checking for program /usr/common/usg/altd/1.0/bin/mkdir...not found Checking for program /usr/common/usg/bin/mkdir...not found Checking for program /usr/common/mss/bin/mkdir...not found Checking for program /usr/common/nsg/bin/mkdir...not found Checking for program /opt/moab/7.2.3-r19/bin/mkdir...not found Checking for program /opt/moab/7.2.3-r19/sbin/mkdir...not found Checking for program /opt/torque/4.2.3.1/sbin/mkdir...not found Checking for program /opt/torque/4.2.3.1/bin/mkdir...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/mkdir...not found Checking for program /usr/syscom/nsg/sbin/mkdir...not found Checking for program /usr/common/nsg/sbin/mkdir...not found Checking for program /usr/common/nsg/bin/mkdir...not found Checking for program /usr/syscom/nsg/bin/mkdir...not found Checking for program /opt/modules/3.2.6.6/bin/mkdir...not found Checking for program /usr/lpp/mmfs/bin/mkdir...not found Checking for program /global/homes/g/gpau/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/programs.py:133) TESTING: configurePrograms from config.programs(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/programs.py:133) Check for the programs needed to build and run PETSc Checking for program /usr/common/usg/mercurial/1.8.1/bin/sh...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/sh...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/sh...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/sh...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/sh...not found Checking for program /usr/common/usg/python/2.7.3/bin/sh...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/sh...not found Checking for program /opt/cray/atp/1.6.2/bin/sh...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/sh...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/sh...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/sh...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/sh...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/sh...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/sh...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/sh...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/sh...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/sh...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/sh...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/sh...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/sh...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/sh...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/sh...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/sh...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/sh...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/sh...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/sh...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/sh...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/sh...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/sh...not found Checking for program /opt/gcc/4.7.2/bin/sh...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/sh...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/sh...not found Checking for program /usr/common/usg/altd/1.0/bin/sh...not found Checking for program /usr/common/usg/bin/sh...not found Checking for program /usr/common/mss/bin/sh...not found Checking for program /usr/common/nsg/bin/sh...not found Checking for program /opt/moab/7.2.3-r19/bin/sh...not found Checking for program /opt/moab/7.2.3-r19/sbin/sh...not found Checking for program /opt/torque/4.2.3.1/sbin/sh...not found Checking for program /opt/torque/4.2.3.1/bin/sh...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/sh...not found Checking for program /usr/syscom/nsg/sbin/sh...not found Checking for program /usr/common/nsg/sbin/sh...not found Checking for program /usr/common/nsg/bin/sh...not found Checking for program /usr/syscom/nsg/bin/sh...not found Checking for program /opt/modules/3.2.6.6/bin/sh...not found Checking for program /usr/lpp/mmfs/bin/sh...not found Checking for program /global/homes/g/gpau/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/common/usg/mercurial/1.8.1/bin/sed...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/sed...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/sed...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/sed...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/sed...not found Checking for program /usr/common/usg/python/2.7.3/bin/sed...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/sed...not found Checking for program /opt/cray/atp/1.6.2/bin/sed...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/sed...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/sed...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/sed...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/sed...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/sed...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/sed...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/sed...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/sed...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/sed...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/sed...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/sed...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/sed...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/sed...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/sed...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/sed...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/sed...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/sed...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/sed...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/sed...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/sed...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/sed...not found Checking for program /opt/gcc/4.7.2/bin/sed...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/sed...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/sed...not found Checking for program /usr/common/usg/altd/1.0/bin/sed...not found Checking for program /usr/common/usg/bin/sed...not found Checking for program /usr/common/mss/bin/sed...not found Checking for program /usr/common/nsg/bin/sed...not found Checking for program /opt/moab/7.2.3-r19/bin/sed...not found Checking for program /opt/moab/7.2.3-r19/sbin/sed...not found Checking for program /opt/torque/4.2.3.1/sbin/sed...not found Checking for program /opt/torque/4.2.3.1/bin/sed...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/sed...not found Checking for program /usr/syscom/nsg/sbin/sed...not found Checking for program /usr/common/nsg/sbin/sed...not found Checking for program /usr/common/nsg/bin/sed...not found Checking for program /usr/syscom/nsg/bin/sed...not found Checking for program /opt/modules/3.2.6.6/bin/sed...not found Checking for program /usr/lpp/mmfs/bin/sed...not found Checking for program /global/homes/g/gpau/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /scratch/scratchdirs/gpau/petsc-4zH0u9 All intermediate test results are stored in /scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs sh: /usr/bin/sed -i s/sed/sd/g "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs/sed1" Executing: /usr/bin/sed -i s/sed/sd/g "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs/sed1" sh: Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/common/usg/mercurial/1.8.1/bin/mv...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/mv...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/mv...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/mv...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/mv...not found Checking for program /usr/common/usg/python/2.7.3/bin/mv...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/mv...not found Checking for program /opt/cray/atp/1.6.2/bin/mv...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/mv...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/mv...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/mv...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/mv...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/mv...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/mv...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/mv...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/mv...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/mv...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/mv...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/mv...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/mv...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/mv...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/mv...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/mv...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/mv...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/mv...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/mv...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/mv...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/mv...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/mv...not found Checking for program /opt/gcc/4.7.2/bin/mv...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/mv...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/mv...not found Checking for program /usr/common/usg/altd/1.0/bin/mv...not found Checking for program /usr/common/usg/bin/mv...not found Checking for program /usr/common/mss/bin/mv...not found Checking for program /usr/common/nsg/bin/mv...not found Checking for program /opt/moab/7.2.3-r19/bin/mv...not found Checking for program /opt/moab/7.2.3-r19/sbin/mv...not found Checking for program /opt/torque/4.2.3.1/sbin/mv...not found Checking for program /opt/torque/4.2.3.1/bin/mv...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/mv...not found Checking for program /usr/syscom/nsg/sbin/mv...not found Checking for program /usr/common/nsg/sbin/mv...not found Checking for program /usr/common/nsg/bin/mv...not found Checking for program /usr/syscom/nsg/bin/mv...not found Checking for program /opt/modules/3.2.6.6/bin/mv...not found Checking for program /usr/lpp/mmfs/bin/mv...not found Checking for program /global/homes/g/gpau/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/common/usg/mercurial/1.8.1/bin/cp...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/cp...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/cp...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/cp...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/cp...not found Checking for program /usr/common/usg/python/2.7.3/bin/cp...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/cp...not found Checking for program /opt/cray/atp/1.6.2/bin/cp...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/cp...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/cp...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/cp...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/cp...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/cp...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/cp...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/cp...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/cp...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/cp...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/cp...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/cp...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/cp...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/cp...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/cp...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/cp...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/cp...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/cp...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/cp...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/cp...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/cp...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/cp...not found Checking for program /opt/gcc/4.7.2/bin/cp...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/cp...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/cp...not found Checking for program /usr/common/usg/altd/1.0/bin/cp...not found Checking for program /usr/common/usg/bin/cp...not found Checking for program /usr/common/mss/bin/cp...not found Checking for program /usr/common/nsg/bin/cp...not found Checking for program /opt/moab/7.2.3-r19/bin/cp...not found Checking for program /opt/moab/7.2.3-r19/sbin/cp...not found Checking for program /opt/torque/4.2.3.1/sbin/cp...not found Checking for program /opt/torque/4.2.3.1/bin/cp...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/cp...not found Checking for program /usr/syscom/nsg/sbin/cp...not found Checking for program /usr/common/nsg/sbin/cp...not found Checking for program /usr/common/nsg/bin/cp...not found Checking for program /usr/syscom/nsg/bin/cp...not found Checking for program /opt/modules/3.2.6.6/bin/cp...not found Checking for program /usr/lpp/mmfs/bin/cp...not found Checking for program /global/homes/g/gpau/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/common/usg/mercurial/1.8.1/bin/grep...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/grep...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/grep...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/grep...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/grep...not found Checking for program /usr/common/usg/python/2.7.3/bin/grep...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/grep...not found Checking for program /opt/cray/atp/1.6.2/bin/grep...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/grep...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/grep...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/grep...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/grep...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/grep...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/grep...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/grep...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/grep...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/grep...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/grep...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/grep...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/grep...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/grep...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/grep...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/grep...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/grep...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/grep...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/grep...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/grep...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/grep...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/grep...not found Checking for program /opt/gcc/4.7.2/bin/grep...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/grep...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/grep...not found Checking for program /usr/common/usg/altd/1.0/bin/grep...not found Checking for program /usr/common/usg/bin/grep...not found Checking for program /usr/common/mss/bin/grep...not found Checking for program /usr/common/nsg/bin/grep...not found Checking for program /opt/moab/7.2.3-r19/bin/grep...not found Checking for program /opt/moab/7.2.3-r19/sbin/grep...not found Checking for program /opt/torque/4.2.3.1/sbin/grep...not found Checking for program /opt/torque/4.2.3.1/bin/grep...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/grep...not found Checking for program /usr/syscom/nsg/sbin/grep...not found Checking for program /usr/common/nsg/sbin/grep...not found Checking for program /usr/common/nsg/bin/grep...not found Checking for program /usr/syscom/nsg/bin/grep...not found Checking for program /opt/modules/3.2.6.6/bin/grep...not found Checking for program /usr/lpp/mmfs/bin/grep...not found Checking for program /global/homes/g/gpau/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/common/usg/mercurial/1.8.1/bin/rm...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/rm...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/rm...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/rm...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/rm...not found Checking for program /usr/common/usg/python/2.7.3/bin/rm...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/rm...not found Checking for program /opt/cray/atp/1.6.2/bin/rm...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/rm...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/rm...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/rm...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/rm...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/rm...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/rm...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/rm...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/rm...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/rm...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/rm...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/rm...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/rm...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/rm...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/rm...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/rm...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/rm...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/rm...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/rm...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/rm...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/rm...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/rm...not found Checking for program /opt/gcc/4.7.2/bin/rm...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/rm...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/rm...not found Checking for program /usr/common/usg/altd/1.0/bin/rm...not found Checking for program /usr/common/usg/bin/rm...not found Checking for program /usr/common/mss/bin/rm...not found Checking for program /usr/common/nsg/bin/rm...not found Checking for program /opt/moab/7.2.3-r19/bin/rm...not found Checking for program /opt/moab/7.2.3-r19/sbin/rm...not found Checking for program /opt/torque/4.2.3.1/sbin/rm...not found Checking for program /opt/torque/4.2.3.1/bin/rm...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/rm...not found Checking for program /usr/syscom/nsg/sbin/rm...not found Checking for program /usr/common/nsg/sbin/rm...not found Checking for program /usr/common/nsg/bin/rm...not found Checking for program /usr/syscom/nsg/bin/rm...not found Checking for program /opt/modules/3.2.6.6/bin/rm...not found Checking for program /usr/lpp/mmfs/bin/rm...not found Checking for program /global/homes/g/gpau/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/common/usg/mercurial/1.8.1/bin/diff...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/diff...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/diff...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/diff...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/diff...not found Checking for program /usr/common/usg/python/2.7.3/bin/diff...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/diff...not found Checking for program /opt/cray/atp/1.6.2/bin/diff...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/diff...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/diff...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/diff...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/diff...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/diff...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/diff...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/diff...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/diff...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/diff...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/diff...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/diff...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/diff...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/diff...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/diff...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/diff...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/diff...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/diff...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/diff...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/diff...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/diff...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/diff...not found Checking for program /opt/gcc/4.7.2/bin/diff...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/diff...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/diff...not found Checking for program /usr/common/usg/altd/1.0/bin/diff...not found Checking for program /usr/common/usg/bin/diff...not found Checking for program /usr/common/mss/bin/diff...not found Checking for program /usr/common/nsg/bin/diff...not found Checking for program /opt/moab/7.2.3-r19/bin/diff...not found Checking for program /opt/moab/7.2.3-r19/sbin/diff...not found Checking for program /opt/torque/4.2.3.1/sbin/diff...not found Checking for program /opt/torque/4.2.3.1/bin/diff...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/diff...not found Checking for program /usr/syscom/nsg/sbin/diff...not found Checking for program /usr/common/nsg/sbin/diff...not found Checking for program /usr/common/nsg/bin/diff...not found Checking for program /usr/syscom/nsg/bin/diff...not found Checking for program /opt/modules/3.2.6.6/bin/diff...not found Checking for program /usr/lpp/mmfs/bin/diff...not found Checking for program /global/homes/g/gpau/bin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs/diff1" "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs/diff2" Executing: "/usr/bin/diff" -w "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs/diff1" "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /global/homes/g/gpau/ps...not found Checking for program /usr/common/usg/mercurial/1.8.1/bin/gzip...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/gzip...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/gzip...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/gzip...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/gzip...not found Checking for program /usr/common/usg/python/2.7.3/bin/gzip...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/gzip...not found Checking for program /opt/cray/atp/1.6.2/bin/gzip...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/gzip...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/gzip...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/gzip...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/gzip...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/gzip...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/gzip...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/gzip...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/gzip...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/gzip...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/gzip...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/gzip...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/gzip...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/gzip...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/gzip...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/gzip...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/gzip...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/gzip...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/gzip...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/gzip...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/gzip...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/gzip...not found Checking for program /opt/gcc/4.7.2/bin/gzip...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/gzip...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/gzip...not found Checking for program /usr/common/usg/altd/1.0/bin/gzip...not found Checking for program /usr/common/usg/bin/gzip...not found Checking for program /usr/common/mss/bin/gzip...not found Checking for program /usr/common/nsg/bin/gzip...not found Checking for program /opt/moab/7.2.3-r19/bin/gzip...not found Checking for program /opt/moab/7.2.3-r19/sbin/gzip...not found Checking for program /opt/torque/4.2.3.1/sbin/gzip...not found Checking for program /opt/torque/4.2.3.1/bin/gzip...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/gzip...not found Checking for program /usr/syscom/nsg/sbin/gzip...not found Checking for program /usr/common/nsg/sbin/gzip...not found Checking for program /usr/common/nsg/bin/gzip...not found Checking for program /usr/syscom/nsg/bin/gzip...not found Checking for program /opt/modules/3.2.6.6/bin/gzip...not found Checking for program /usr/lpp/mmfs/bin/gzip...not found Checking for program /global/homes/g/gpau/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/common/usg/python/2.7.3/bin/python" ================================================================================ TEST configureGit from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/common/usg/mercurial/1.8.1/bin/git...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/git...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/git...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/git...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/git...not found Checking for program /usr/common/usg/python/2.7.3/bin/git...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/git...not found Checking for program /opt/cray/atp/1.6.2/bin/git...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/git...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/git...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/git...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/git...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/git...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/git...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/git...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/git...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/git...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/git...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/git...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/git...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/git...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/git...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/git...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/git...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/git...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/git...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/git...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/git...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/git...not found Checking for program /opt/gcc/4.7.2/bin/git...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/git...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/git...not found Checking for program /usr/common/usg/altd/1.0/bin/git...not found Checking for program /usr/common/usg/bin/git...found Defined make macro "GIT" to "git" sh: git --version Executing: git --version sh: git version 1.7.7.4 ================================================================================ TEST configureMercurial from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/common/usg/mercurial/1.8.1/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 1.8.1) ================================================================================ TEST configureCVS from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:46) TESTING: configureCVS from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:46) Find the CVS executable Checking for program /usr/common/usg/mercurial/1.8.1/bin/cvs...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/cvs...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/cvs...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/cvs...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/cvs...not found Checking for program /usr/common/usg/python/2.7.3/bin/cvs...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/cvs...not found Checking for program /opt/cray/atp/1.6.2/bin/cvs...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/cvs...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/cvs...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/cvs...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/cvs...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/cvs...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/cvs...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/cvs...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/cvs...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/cvs...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/cvs...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/cvs...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/cvs...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/cvs...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/cvs...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/cvs...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/cvs...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/cvs...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/cvs...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/cvs...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/cvs...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/cvs...not found Checking for program /opt/gcc/4.7.2/bin/cvs...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/cvs...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/cvs...not found Checking for program /usr/common/usg/altd/1.0/bin/cvs...not found Checking for program /usr/common/usg/bin/cvs...not found Checking for program /usr/common/mss/bin/cvs...not found Checking for program /usr/common/nsg/bin/cvs...not found Checking for program /opt/moab/7.2.3-r19/bin/cvs...not found Checking for program /opt/moab/7.2.3-r19/sbin/cvs...not found Checking for program /opt/torque/4.2.3.1/sbin/cvs...not found Checking for program /opt/torque/4.2.3.1/bin/cvs...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/cvs...not found Checking for program /usr/syscom/nsg/sbin/cvs...not found Checking for program /usr/common/nsg/sbin/cvs...not found Checking for program /usr/common/nsg/bin/cvs...not found Checking for program /usr/syscom/nsg/bin/cvs...not found Checking for program /opt/modules/3.2.6.6/bin/cvs...not found Checking for program /usr/lpp/mmfs/bin/cvs...not found Checking for program /global/homes/g/gpau/bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" sh: cvs --version Executing: cvs --version sh: Concurrent Versions System (CVS) 1.12.12 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:55) TESTING: configureSubversion from config.sourceControl(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/sourceControl.py:55) Find the Subversion executable Checking for program /usr/common/usg/mercurial/1.8.1/bin/svn...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/svn...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/svn...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/svn...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/svn...not found Checking for program /usr/common/usg/python/2.7.3/bin/svn...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/svn...not found Checking for program /opt/cray/atp/1.6.2/bin/svn...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/svn...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/svn...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/svn...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/svn...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/svn...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/svn...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/svn...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/svn...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/svn...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/svn...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/svn...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/svn...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/svn...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/svn...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/svn...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/svn...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/svn...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/svn...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/svn...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/svn...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/svn...not found Checking for program /opt/gcc/4.7.2/bin/svn...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/svn...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/svn...not found Checking for program /usr/common/usg/altd/1.0/bin/svn...not found Checking for program /usr/common/usg/bin/svn...found Defined make macro "SVN" to "svn" sh: svn --version -q Executing: svn --version -q sh: 1.6.4 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 4 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jun, 10, 2013" #define PETSC_VERSION_GIT "e53ed6aa8368a9c1cf5e19ad082d3ac92ae326b5" #define PETSC_VERSION_DATE_GIT "2013-06-10 10:00:38 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source" Defined "DIR" to ""/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/petscdir.py:77) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/petscdir.py:77) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/petscdir.py:84) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/petscdir.py:84) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST printEnvVariables from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1504) TESTING: printEnvVariables from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1504) **** printenv **** LESS=-M -I PE_PRODUCT_LIST=DARSHAN:CRAY_MPICH2:ATP:CRAY_RCA:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:ASYNCPE:GNU:GCC:CRAY_SHMEM:XTPE_MC12 PATHSCALE_PRE_COMPILE_OPTS= -march=barcelona MODULESHOME=/opt/modules/3.2.6.6 NUMPY_HOME=/usr/common/usg/python/numpy/1.6.2 CRAYPE_NETWORK_TARGET=gemini USERMODULES=/opt/modules/3.2.6.6/init/.usermodules:acml:alps:apprentice2:atp:blcr:cce:chapel:cray-libsci:cray-mpich2:craypat:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cuda:cudatools:ddt:dmapp:dwarf:fftw:ga:gcc:gdb:gni-headers:hdf5:hdf5-parallel:intel:java:libfast:libsci_acc:mpich1:mrnet:netcdf:ntk:onesided:pathscale:petsc:petsc-complex:pgi:pmi:portals:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:rca:stat:tpsl:trilinos:udreg:ugni:xpmem:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview:/etc/opt/cray/modules/site_usermodules:/usr/common/nsg/Modules/modulefiles CRAY_LIBSCI_BASE_DIR=/opt/cray/libsci/12.0.00 GCC_PATH=/opt/gcc/4.7.2 XKEYSYMDB=/usr/share/X11/XKeysymDB INTEL_MPICH2=120 INFOPATH=/opt/gcc/4.7.2/snos/share/info:/usr/local/info:/usr/share/info:/usr/info ALTD_ON=1 GCC_VERSION=4.7.2 CRAY_ROOTFS=DSL BASH_ENV= GNU_PRE_COMPILE_OPTS= -march=amdfam10 CRAY_MPICH2_ROOTDIR=/opt/cray/mpt/5.6.4 CRAY_MPICH2_BASEDIR=/opt/cray/mpt/5.6.4/gni CRAY_SHMEM_VER=5.6.4 CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include MANPATH=/usr/common/usg/mercurial/1.8.1/share/man:/usr/common/usg/python/ipython/0.12.1/share/man:/usr/common/usg/python/matplotlib/1.1.0/share/man:/usr/common/usg/python/scipy/0.11.0/share/man:/usr/common/usg/python/numpy/1.6.2/share/man:/opt/cray/mpt/5.6.4/gni/man/mpich2:/opt/cray/atp/1.6.2/man:/opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/man:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/man:/opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/man:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/man:/opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/man:/opt/cray/libsci/12.0.00/man:/opt/gcc/4.7.2/snos/share/man:/opt/cray/xt-asyncpe/5.19/man:/usr/common/usg/cmake/2.8.10.1/man:/usr/common/usg/man:/usr/common/mss/man:/usr/common/nsg/man:/opt/moab/7.2.3-r19/share/man/:/opt/torque/4.2.3.1/share/man:/opt/cray/mpt/5.6.4/gni/man/shmem:/opt/cray/eslogin/eswrap/1.0.10/man:/usr/common/nsg/share/man:/usr/common/nsg/man:/usr/syscom/nsg/man:/opt/modules/3.2.6.6/man:/usr/share/man:/usr/local/man:/usr/man:/opt/cray/share/man:ignore:/cm/local/apps/environment-modules/3.2.6/man JAVA_HOME=/usr/lib64/jvm/jre PROFILEREAD=true DMAPP_ABORT_ON_ERROR=1 MATPLOTLIB_HOME=/usr/common/usg/python/matplotlib/1.1.0 ALTD_SELECT_USERS= VENDOR=suse CRAY_DARSHAN_DIR=/usr/common/usg/darshan/2.2.6 PYTHONPATH=/usr/common/usg/mercurial/1.8.1/lib/python2.7/site-packages:/usr/common/usg/python/ipython/0.12.1/lib/python:/usr/common/usg/python/matplotlib/1.1.0/lib/python:/usr/common/usg/python/scipy/0.11.0/lib/python:/usr/common/usg/python/numpy/1.6.2/lib/python:/usr/common/usg/altd/lib64/python2.6/site-packages CRAY_LIBSCI_sandybridge=81 CRAY_LIBSCI_ivybridge=81 MPICH_ABORT_ON_ERROR=1 PE_ENV=GNU INTEL_PRE_COMPILE_OPTS= -msse3 PELOCAL_PRGENV=true TARGETMODULES=/opt/modules/3.2.6.6/init/.targetmodules:craype-abudhabi:craype-abudhabi-cu:craype-barcelona:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-mc12:craype-mc8:craype-network-aries:craype-network-gemini:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-target-petest:craype-xeon:xtpe-abudhabi:xtpe-abudhabi-cu:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-netork-aries:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-cnl:xtpe-target-native:xtpe-target-petest:xtpe-xeon:/etc/opt/cray/modules/site_targetmodules SSH_CONNECTION=97.90.194.174 51755 128.55.68.100 22 HOSTNAME=hopper05. MOABHOMEDIR=/var/spool/moab MPICH_GNI_MBOX_PLACEMENT=preferred ALTD_WORKDIR=/scratch/scratchdirs/altdlogs CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -lrca SSH_TTY=/dev/pts/27 MAIL=/var/mail/gpau CSHRCREAD=true LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32: MPICH_MPIIO_DVS_MAXNODES=14 GROUP=gpau JAVA_ROOT=/usr/lib64/jvm/jre MINICOM=-c on CSHEDIT=emacs LESSOPEN=lessopen.sh %s ESWRAP_LOGIN=128.55.44.27 MACHTYPE=x86_64-suse-linux CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/include USER=gpau INPUTRC=/etc/inputrc INTEL_LIBSCI=120 MODULE_VERSION_STACK=3.2.6.6 NERSC_HOST=hopper SHLVL=4 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include CPU=x86_64 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 CRAY_LIBSCI_DIR=/opt/cray/libsci/12.0.00 PETSC_DIR=/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source DVS_VERSION=0.9.0 LIBRARYMODULES=/opt/modules/3.2.6.6/init/.librarymodules:acml:alps:apprentice2:blcr:cray-libsci:cray-mpich2:cray-petsc:cray-petsc-complex:cray-shmem:cuda:cudatoolkit:dmapp:fftw:ga:gni-headers:hdf4:hdf5:hdf5-parallel:libfast:libsci_acc:mpich1:mrnet:netcdf:ntk:onesided:petsc:petsc-complex:pmi:portals:rca:tpsl:trilinos:udreg:ugni:xpmem:xt-atp:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:/etc/opt/cray/modules/site_librarymodules PGI_MPICH2=119 CRAY_MPICH2=74 GSCRATCH=/global/scratch/sd/gpau JAVA_BINDIR=/usr/lib64/jvm/jre/bin ALTD_SELECT_ON=0 XTPE_NETWORK_TARGET=gemini SHELL=/bin/csh ENV=/etc/bash.bashrc PKG_CONFIG_PATH=/opt/cray/switch/1.0-1.0401.36779.2.72.gem/lib64/pkgconfig:/opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/lib64/pkgconfig:/opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/lib64/pkgconfig:/opt/cray/hosts/1.0-1.0401.35364.1.115.gem/lib64/pkgconfig:/opt/cray/configuration/1.0-1.0401.35391.1.2.gem/lib64/pkgconfig:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64/pkgconfig:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64/pkgconfig:/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/lib64/pkgconfig:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64/pkgconfig:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64/pkgconfig:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64/pkgconfig:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64/pkgconfig LS_OPTIONS=-N --color=tty -T 0 XNLSPATH=/usr/share/X11/nls TMPDIR=/scratch/scratchdirs/gpau MODULEPATH=/opt/cray/gem/modulefiles:/opt/cray/xt-asyncpe/default/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/opt/modules/default/modulefiles:/usr/common/usg/Modules/modulefiles:/usr/common/acts/Modules/modulefiles:/usr/common/nsg/Modules/modulefiles:/usr/common/ftg/Modules/modulefiles:/usr/common/graphics/Modules/modulefiles:/usr/common/jgi/Modules/modulefiles:/usr/syscom/nsg/modulefiles:/usr/syscom/nsg/opt/modulefiles:/usr/common/tig/Modules/modulefiles ALTD_VERBOSE=0 ALT_LINKER=/usr/common/usg/altd/1.0/bin/ld XDG_CONFIG_DIRS=/etc/xdg MAN_POSIXLY_CORRECT=1 WINDOWMANAGER=/usr/bin/gnome XDG_DATA_DIRS=/usr/local/share:/usr/share:/etc/opt/kde3/share:/opt/cray/share:/opt/kde3/share:/opt/pathscale/share:/usr/share/gnome/help CRAY_SHMEM_ROOTDIR=/opt/cray/mpt/5.6.4 TOOLMODULES=/opt/modules/3.2.6.6/init/.toolmodules:apprentice2:atp:craypat:iobuf:mrnet:perftools:stat:xt-craypat:xt-lgdb:xt-papi:xt-totalview:/etc/opt/cray/modules/site_toolmodules COLORTERM=1 CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/include -I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include PAGER=less MODULE_VERSION=3.2.6.6 LIBSCI_VERSION=12.0.00 CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 IPYTHON_HOME=/usr/common/usg/python/ipython/0.12.1 PYTHON_DIR=/usr/common/usg/python/2.7.3 ATP_MRNET_COMM_PATH=/opt/cray/atp/1.6.2/bin/atp_mrnet_commnode_wrapper CRAY_MPICH2_VER=5.6.4 HOME=/global/homes/g/gpau LD_LIBRARY_PATH=/usr/common/usg/python/2.7.3/lib/python2.7:/usr/common/usg/python/2.7.3/lib:/opt/gcc/default/snos/lib64:/opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/lib64:/opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/lib64:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/lib64:/opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/lib64:/opt/gcc/mpc/0.8.1/lib:/opt/gcc/mpfr/2.4.2/lib:/opt/gcc/gmp/4.3.2/lib:/opt/gcc/4.7.2/snos/lib64:/opt/gcc/4.7.1/snos/lib64 LANG=en_US.UTF-8 ALTD_PATH=/usr/common/usg/altd/1.0 MAKEOVERRIDES=${-*-command-variables-*-} ASYNCPE_DIR=/opt/cray/xt-asyncpe/5.19 G_BROKEN_FILENAMES=1 DVS_MAXNODES=1__ FFTW_SYSTEM_WISDOM_DIR=/opt/cray/libsci/12.0.00 _=/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/configure XTPE_MC12_ENABLED=ON _LMFILES_002=es/scipy/0.11.0:/usr/common/usg/Modules/modulefiles/matplotlib/1.1.0:/usr/common/usg/Modules/modulefiles/ipython/0.12.1:/usr/common/usg/Modules/modulefiles/python/2.7.3:/usr/common/usg/Modules/modulefiles/mercurial/1.8.1 LESS_ADVANCED_PREPROCESSOR=no _LMFILES_000=/opt/modulefiles/modules/3.2.6.6:/usr/syscom/nsg/modulefiles/nsg/1.1.0:/opt/cray/xt-asyncpe/default/modulefiles/xtpe-network-gemini:/usr/common/usg/Modules/modulefiles/darshan/2.2.6:/opt/cray/modulefiles/cray-mpich2/5.6.4:/opt/cray/modulefiles/atp/1.6.2:/opt/cray/gem/modulefiles/switch/1.0-1.0401.36779.2.72.gem:/opt/cray/gem/modulefiles/shared-root/1.0-1.0401.37253.3.50.gem:/opt/cray/gem/modulefiles/pdsh/2.26-1.0401.37449.1.1.gem:/opt/cray/gem/modulefiles/nodehealth/5.0-1.0401.38460.12.18.gem:/opt/cray/gem/modulefiles/lbcd/2.1-1.0401.35360.1.2.gem:/opt/cray/gem/modulefiles/hosts/1.0-1.0401.35364.1.115.gem:/opt/cray/gem/modulefiles/configuration/1.0-1.0401.35391.1.2.gem:/opt/cray/modulefiles/ccm/2.2.0-1.0401.37254.2.142:/opt/cray/gem/modulefiles/audit/1.0.0-1.0401.37969.2.32.gem:/opt/cray/gem/modulefiles/rca/1.0.0-2.0401.38656.2.2.gem:/opt/cray/gem/modulefiles/dvs/1.8.6_0.9.0-1.0401.1401.1.120:/opt/cray/gem/modulefiles/csa/3.0.0-1_2.0401.37452.4.50.gem:/opt/cray/gem/modulefiles/job/1.5. _LMFILES_001=5-0.1_2.0401.35380.1.10.gem:/opt/cray/gem/modulefiles/xpmem/0.1-2.0401.36790.4.3.gem:/opt/cray/gem/modulefiles/gni-headers/2.1-1.0401.5675.4.4.gem:/opt/cray/gem/modulefiles/dmapp/3.2.1-1.0401.5983.4.5.gem:/opt/cray/gem/modulefiles/pmi/4.0.1-1.0000.9421.73.3.gem:/opt/cray/gem/modulefiles/ugni/4.0-1.0401.5928.9.5.gem:/opt/cray/gem/modulefiles/udreg/2.3.2-1.0401.5929.3.3.gem:/opt/cray/modulefiles/cray-libsci/12.0.00:/opt/modulefiles/gcc/4.7.2:/opt/modulefiles/xt-asyncpe/5.19:/opt/modulefiles/eswrap/1.0.10:/opt/cray/xt-asyncpe/default/modulefiles/xtpe-mc12:/opt/cray/modulefiles/cray-shmem/5.6.4:/opt/modulefiles/torque/4.2.3.1:/opt/modulefiles/moab/7.2.3-r19-b121-SUSE11:/usr/common/usg/Modules/modulefiles/altd/1.0:/usr/common/usg/Modules/modulefiles/usg-default-modules/1.0:/usr/common/usg/Modules/modulefiles/cmake/2.8.10.1:/opt/modulefiles/PrgEnv-gnu/4.1.40:/usr/common/usg/Modules/modulefiles/python_base/2.7.3:/usr/common/usg/Modules/modulefiles/numpy/1.6.2:/usr/common/usg/Modules/modulefil LIBSCIFFT=-ldarshan-mpi-io CRAY_CPU_TARGET=mc12 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/include NNTPSERVER=news XCURSOR_THEME=DMZ CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 OSTYPE=linux HOST=hopper05 CRAY_SHMEM_DIR=/opt/cray/mpt/5.6.4/gni/sma BUILD_OPTS=/opt/cray/xt-asyncpe/5.19/bin/build-opts CRAY_LIBSCI_VERSION=12.0.00 FROM_HEADER=nersc.gov LESSCLOSE=lessclose.sh %s %s MFLAGS=-w CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include -I/opt/cray-hss-devel/7.0.0/include -I/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include SCRATCH2=/scratch2/scratchdirs/gpau MAKELEVEL=4 CVS_RSH=ssh GNU47_LIBSCI=47 DISPLAY=hopper05:16.0 JRE_HOME=/usr/lib64/jvm/jre MORE=-sl CRAY_LIBSCI=74 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/libsci/12.0.00/GNU/47/mc12 GNU_VERSION=4.7.2 HOSTTYPE=x86_64 LIBGL_ALWAYS_INDIRECT=1 SSH_CLIENT=97.90.194.174 51755 22 LOGNAME=gpau CRAY_PRGENVGNU=loaded PATH=/usr/common/usg/mercurial/1.8.1/bin:/usr/common/usg/python/ipython/0.12.1/bin:/usr/common/usg/python/matplotlib/1.1.0/bin:/usr/common/usg/python/scipy/0.11.0/bin:/usr/common/usg/python/numpy/1.6.2/bin:/usr/common/usg/python/2.7.3/bin:/usr/common/usg/darshan/2.2.6/bin:/opt/cray/atp/1.6.2/bin:/opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin:/opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin:/opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin:/opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin:/opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin:/opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin:/opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin:/opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin:/opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin:/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin:/opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin:/opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/gcc/4.7.2/bin:/opt/cray/xt-asyncpe/5.19/bin:/usr/common/usg/cmake/2.8.10.1/bin:/usr/common/usg/altd/1.0/bin:/usr/common/usg/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/opt/moab/7.2.3-r19/bin:/opt/moab/7.2.3-r19/sbin:/opt/torque/4.2.3.1/sbin:/opt/torque/4.2.3.1/bin:/opt/cray/eslogin/eswrap/1.0.10/bin:/usr/syscom/nsg/sbin:/usr/common/nsg/sbin:/usr/common/nsg/bin:/usr/syscom/nsg/bin:/opt/modules/3.2.6.6/bin:/usr/lpp/mmfs/bin:/global/homes/g/gpau/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/bin ATP_HOME=/opt/cray/atp/1.6.2 MAKEFLAGS=w -- eos=eco2n ASYNCPE_VERSION=5.19 TERM=xterm CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/include CRAY_MPICH2_DIR=/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47 LIBSCI_BASE_DIR=/opt/cray/libsci/12.0.00 CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include CRAY_PRE_COMPILE_OPTS=-hnetwork=gemini CRAY_DARSHAN_VERSION=2.2.6 CRAY_SHMEM_BASEDIR=/opt/cray/mpt/5.6.4/gni ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/atp/1.6.2/lib/ -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -Wl,-lAtpSigHCommData -Wl,-lAtpSigHandler INFODIR=/usr/local/info:/usr/share/info:/usr/info MPICH_DIR=/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47 QT_HOME_DIR=/usr/share/desktop-data CRAY_SITE_LIST_DIR=/etc/opt/cray/modules LESSKEY=/etc/lesskey.bin RCLOCAL_PRGENV=true MERCURIAL_HOME=/usr/common/usg/mercurial/1.8.1 SCIPY_HOME=/usr/common/usg/python/scipy/0.11.0 G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-1,CP1252 DARSHAN_POST_LINK_OPTS= -L/usr/common/usg/darshan/2.2.6/lib -ldarshan-mpi-io -lz -Wl,-u,__wrap_fopen,-u,MPI_Init,-u,MPI_Wtime,-wrap,write,-wrap,open,-wrap,creat,-wrap,creat64,-wrap,open64,-wrap,close,-wrap,read,-wrap,lseek,-wrap,lseek64,-wrap,pread,-wrap,pwrite,-wrap,readv,-wrap,writev,-wrap,__xstat,-wrap,__lxstat,-wrap,__fxstat,-wrap,__xstat64,-wrap,__lxstat64,-wrap,__fxstat64,-wrap,mmap,-wrap,mmap64,-wrap,fopen,-wrap,fclose,-wrap,fread,-wrap,fwrite,-wrap,fseek,-wrap,fopen64,-wrap,pread64,-wrap,pwrite64,-wrap,fsync,-wrap,fdatasync,-wrap,ncmpi_create,-wrap,ncmpi_open,-wrap,ncmpi_close,-wrap,H5Fcreate,-wrap,H5Fopen,-wrap,H5Fclose -lfmpich -lmpichcxx -ldarshan-posix -ldarshan-mpi-io -lz PYTHONSTARTUP=/etc/pythonstart SCRATCH=/scratch/scratchdirs/gpau OLDPWD=/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source LOADEDMODULES=modules/3.2.6.6:nsg/1.1.0:xtpe-network-gemini:darshan/2.2.6:cray-mpich2/5.6.4:atp/1.6.2:switch/1.0-1.0401.36779.2.72.gem:shared-root/1.0-1.0401.37253.3.50.gem:pdsh/2.26-1.0401.37449.1.1.gem:nodehealth/5.0-1.0401.38460.12.18.gem:lbcd/2.1-1.0401.35360.1.2.gem:hosts/1.0-1.0401.35364.1.115.gem:configuration/1.0-1.0401.35391.1.2.gem:ccm/2.2.0-1.0401.37254.2.142:audit/1.0.0-1.0401.37969.2.32.gem:rca/1.0.0-2.0401.38656.2.2.gem:dvs/1.8.6_0.9.0-1.0401.1401.1.120:csa/3.0.0-1_2.0401.37452.4.50.gem:job/1.5.5-0.1_2.0401.35380.1.10.gem:xpmem/0.1-2.0401.36790.4.3.gem:gni-headers/2.1-1.0401.5675.4.4.gem:dmapp/3.2.1-1.0401.5983.4.5.gem:pmi/4.0.1-1.0000.9421.73.3.gem:ugni/4.0-1.0401.5928.9.5.gem:udreg/2.3.2-1.0401.5929.3.3.gem:cray-libsci/12.0.00:gcc/4.7.2:xt-asyncpe/5.19:eswrap/1.0.10:xtpe-mc12:cray-shmem/5.6.4:torque/4.2.3.1:moab/7.2.3-r19-b121-SUSE11:altd/1.0:usg-default-modules/1.0:cmake/2.8.10.1:PrgEnv-gnu/4.1.40:python_base/2.7.3:numpy/1.6.2:scipy/0.11.0:matplotlib/1.1.0:ipython/0.12.1:python/2.7.3:mercurial/1.8.1 ALTD_SELECT_OFF_USERS= SHMEM_ABORT_ON_ERROR=1 eos=eco2n GNU46_LIBSCI=46 PWD=/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source PGI_LIBSCI=119 CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 CRAY_LD_LIBRARY_PATH=/usr/common/usg/darshan/2.2.6/lib:/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64:/opt/cray/libsci/12.0.00/GNU/47/mc12/lib:/opt/cray/mpt/5.6.4/gni/mpich2-pgi/119/lib:/opt/cray/mpt/5.6.4/gni/sma/lib64:/opt/cray/mpt/5.6.4/gni/sma64/lib64 XTOS_VERSION=4.1.40 PRGENVMODULES=/opt/modules/3.2.6.6/init/.prgenvmodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:/etc/opt/cray/modules/site_prgenvmodules ================================================================================ TEST resetEnvCompilers from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1511) TESTING: resetEnvCompilers from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1511) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1476) TESTING: checkMPICompilerOverride from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1476) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1495) TESTING: requireMpiLdPath from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1495) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:399) TESTING: checkVendor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:399) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:409) TESTING: checkInitialFlags from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:409) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:525) TESTING: checkCCompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:525) Locate a functional C compiler Checking for program /opt/cray/xt-asyncpe/5.19/bin/cc...found Defined make macro "CC" to "/opt/cray/xt-asyncpe/5.19/bin/cc" Pushing language C All intermediate test results are stored in /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:560) TESTING: checkCPreprocessor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:560) Locate a functional C preprocessor Checking for program /opt/cray/xt-asyncpe/5.19/bin/cc...found Defined make macro "CPP" to "/opt/cray/xt-asyncpe/5.19/bin/cc -E" Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -E -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -E -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c" # 1 "" # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c" # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/confdefs.h" 1 # 2 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c" 2 # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conffix.h" 1 # 3 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 347 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 353 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 354 "/usr/include/sys/cdefs.h" 2 3 4 # 348 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 213 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 325 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 29 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 62 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 100 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 69 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 # 235 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 553 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)); extern int clearenv (void) __attribute__ ((__nothrow__)); # 604 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 615 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 637 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 658 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 707 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 729 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 747 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 766 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 802 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 907 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 942 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 958 "/usr/include/stdlib.h" 3 4 # 3 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c" 2 Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:594) TESTING: checkCUDACompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:594) Locate a functional CUDA compiler Checking for program /usr/common/usg/mercurial/1.8.1/bin/nvcc...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/nvcc...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/nvcc...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/nvcc...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/nvcc...not found Checking for program /usr/common/usg/python/2.7.3/bin/nvcc...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/nvcc...not found Checking for program /opt/cray/atp/1.6.2/bin/nvcc...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/nvcc...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/nvcc...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/nvcc...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/nvcc...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/nvcc...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/nvcc...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/nvcc...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/nvcc...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/nvcc...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/nvcc...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/nvcc...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/nvcc...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/nvcc...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/nvcc...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/nvcc...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/nvcc...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/nvcc...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/nvcc...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/nvcc...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/nvcc...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/nvcc...not found Checking for program /opt/gcc/4.7.2/bin/nvcc...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/nvcc...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/nvcc...not found Checking for program /usr/common/usg/altd/1.0/bin/nvcc...not found Checking for program /usr/common/usg/bin/nvcc...not found Checking for program /usr/common/mss/bin/nvcc...not found Checking for program /usr/common/nsg/bin/nvcc...not found Checking for program /opt/moab/7.2.3-r19/bin/nvcc...not found Checking for program /opt/moab/7.2.3-r19/sbin/nvcc...not found Checking for program /opt/torque/4.2.3.1/sbin/nvcc...not found Checking for program /opt/torque/4.2.3.1/bin/nvcc...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/nvcc...not found Checking for program /usr/syscom/nsg/sbin/nvcc...not found Checking for program /usr/common/nsg/sbin/nvcc...not found Checking for program /usr/common/nsg/bin/nvcc...not found Checking for program /usr/syscom/nsg/bin/nvcc...not found Checking for program /opt/modules/3.2.6.6/bin/nvcc...not found Checking for program /usr/lpp/mmfs/bin/nvcc...not found Checking for program /global/homes/g/gpau/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/X11/nvcc...not found Checking for program /usr/X11R6/bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/lib/mit/bin/nvcc...not found Checking for program /usr/lib/mit/sbin/nvcc...not found Checking for program /opt/cray/bin/nvcc...not found Checking for program /global/homes/g/gpau/nvcc...not found Checking for program /global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/bin/win32fe/nvcc...not found Checking for program /usr/common/usg/mercurial/1.8.1/bin/nvcc...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/nvcc...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/nvcc...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/nvcc...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/nvcc...not found Checking for program /usr/common/usg/python/2.7.3/bin/nvcc...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/nvcc...not found Checking for program /opt/cray/atp/1.6.2/bin/nvcc...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/nvcc...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/nvcc...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/nvcc...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/nvcc...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/nvcc...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/nvcc...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/nvcc...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/nvcc...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/nvcc...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/nvcc...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/nvcc...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/nvcc...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/nvcc...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/nvcc...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/nvcc...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/nvcc...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/nvcc...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/nvcc...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/nvcc...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/nvcc...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/nvcc...not found Checking for program /opt/gcc/4.7.2/bin/nvcc...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/nvcc...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/nvcc...not found Checking for program /usr/common/usg/altd/1.0/bin/nvcc...not found Checking for program /usr/common/usg/bin/nvcc...not found Checking for program /usr/common/mss/bin/nvcc...not found Checking for program /usr/common/nsg/bin/nvcc...not found Checking for program /opt/moab/7.2.3-r19/bin/nvcc...not found Checking for program /opt/moab/7.2.3-r19/sbin/nvcc...not found Checking for program /opt/torque/4.2.3.1/sbin/nvcc...not found Checking for program /opt/torque/4.2.3.1/bin/nvcc...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/nvcc...not found Checking for program /usr/syscom/nsg/sbin/nvcc...not found Checking for program /usr/common/nsg/sbin/nvcc...not found Checking for program /usr/common/nsg/bin/nvcc...not found Checking for program /usr/syscom/nsg/bin/nvcc...not found Checking for program /opt/modules/3.2.6.6/bin/nvcc...not found Checking for program /usr/lpp/mmfs/bin/nvcc...not found Checking for program /global/homes/g/gpau/bin/nvcc...not found Checking for program /usr/bin/nvcc...not found Checking for program /bin/nvcc...not found Checking for program /usr/sbin/nvcc...not found Checking for program /sbin/nvcc...not found Checking for program /usr/local/bin/nvcc...not found Checking for program /usr/bin/X11/nvcc...not found Checking for program /usr/X11R6/bin/nvcc...not found Checking for program /usr/games/nvcc...not found Checking for program /usr/lib/mit/bin/nvcc...not found Checking for program /usr/lib/mit/sbin/nvcc...not found Checking for program /opt/cray/bin/nvcc...not found Checking for program /global/homes/g/gpau/nvcc...not found Checking for program /global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/bin/win32fe/nvcc...not found ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:632) TESTING: checkCUDAPreprocessor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:632) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:735) TESTING: checkCxxCompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:735) Locate a functional Cxx compiler Checking for program /usr/common/usg/mercurial/1.8.1/bin/g++...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/g++...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/g++...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/g++...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/g++...not found Checking for program /usr/common/usg/python/2.7.3/bin/g++...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/g++...not found Checking for program /opt/cray/atp/1.6.2/bin/g++...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/g++...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/g++...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/g++...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/g++...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/g++...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/g++...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/g++...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/g++...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/g++...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/g++...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/g++...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/g++...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/g++...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/g++...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/g++...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/g++...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/g++...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/g++...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/g++...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/g++...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/g++...not found Checking for program /opt/gcc/4.7.2/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:773) TESTING: checkCxxPreprocessor from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:773) Locate a functional Cxx preprocessor Checking for program /usr/common/usg/mercurial/1.8.1/bin/g++...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/g++...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/g++...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/g++...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/g++...not found Checking for program /usr/common/usg/python/2.7.3/bin/g++...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/g++...not found Checking for program /opt/cray/atp/1.6.2/bin/g++...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/g++...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/g++...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/g++...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/g++...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/g++...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/g++...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/g++...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/g++...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/g++...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/g++...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/g++...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/g++...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/g++...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/g++...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/g++...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/g++...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/g++...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/g++...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/g++...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/g++...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/g++...not found Checking for program /opt/gcc/4.7.2/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx sh: g++ -E -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -E -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc" # 1 "" # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc" # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/confdefs.h" 1 # 2 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc" 2 # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc" 2 # 1 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 1 3 # 41 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 3 # 42 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 3 # 1 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/c++config.h" 1 3 # 171 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 414 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/c++config.h" 3 # 1 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/os_defines.h" 1 3 # 40 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 347 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 353 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 354 "/usr/include/sys/cdefs.h" 2 3 4 # 348 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 41 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/os_defines.h" 2 3 # 415 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/c++config.h" 2 3 # 1 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/cpu_defines.h" 1 3 # 418 "/opt/gcc/4.7.2/snos/include/g++/x86_64-suse-linux/bits/c++config.h" 2 3 # 44 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 2 3 # 66 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 33 "/usr/include/stdlib.h" 3 4 # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 213 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 236 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 29 "/usr/include/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 69 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 # 55 "/usr/include/sys/select.h" 3 4 typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 extern "C" { # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 } # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw (); extern int clearenv (void) throw (); # 604 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 615 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 625 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 637 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 647 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 658 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 669 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 679 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 689 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 701 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 729 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 802 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 890 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 958 "/usr/include/stdlib.h" 3 4 } # 67 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 2 3 # 98 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 160 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 195 "/opt/gcc/4.7.2/snos/include/g++/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::abs; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc" 2 Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:882) TESTING: checkFortranCompiler from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:882) Locate a functional Fortran compiler Checking for program /opt/cray/xt-asyncpe/5.19/bin/ftn...found Defined make macro "FC" to "/opt/cray/xt-asyncpe/5.19/bin/ftn" Pushing language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:901) TESTING: checkFortranComments from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:901) Make sure fortran comment "!" works Pushing language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:964) TESTING: checkPIC from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:964) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc --help Executing: /opt/cray/xt-asyncpe/5.19/bin/cc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid C linker flag -fPIC Adding C compiler flag -fPIC sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn --help Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid FC linker flag -fPIC Adding FC compiler flag -fPIC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:998) TESTING: checkLargeFileIO from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:998) ================================================================================ TEST checkArchiver from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1097) TESTING: checkArchiver from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1097) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils; SUSE Linux Enterprise PTF) 2.21.1 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils; SUSE Linux Enterprise PTF) 2.21.1 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/common/usg/mercurial/1.8.1/bin/ar...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/ar...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/ar...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/ar...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/ar...not found Checking for program /usr/common/usg/python/2.7.3/bin/ar...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/ar...not found Checking for program /opt/cray/atp/1.6.2/bin/ar...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/ar...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/ar...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/ar...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/ar...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/ar...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/ar...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/ar...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/ar...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/ar...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/ar...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/ar...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/ar...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/ar...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/ar...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/ar...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/ar...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/ar...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/ar...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/ar...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/ar...not found Checking for program /opt/gcc/4.7.2/bin/ar...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/ar...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/ar...not found Checking for program /usr/common/usg/altd/1.0/bin/ar...not found Checking for program /usr/common/usg/bin/ar...not found Checking for program /usr/common/mss/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/moab/7.2.3-r19/bin/ar...not found Checking for program /opt/moab/7.2.3-r19/sbin/ar...not found Checking for program /opt/torque/4.2.3.1/sbin/ar...not found Checking for program /opt/torque/4.2.3.1/bin/ar...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/ar...not found Checking for program /usr/syscom/nsg/sbin/ar...not found Checking for program /usr/common/nsg/sbin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /usr/syscom/nsg/bin/ar...not found Checking for program /opt/modules/3.2.6.6/bin/ar...not found Checking for program /usr/lpp/mmfs/bin/ar...not found Checking for program /global/homes/g/gpau/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/common/usg/mercurial/1.8.1/bin/ranlib...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/ranlib...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/ranlib...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/ranlib...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/ranlib...not found Checking for program /usr/common/usg/python/2.7.3/bin/ranlib...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/ranlib...not found Checking for program /opt/cray/atp/1.6.2/bin/ranlib...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/ranlib...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/ranlib...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/ranlib...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/ranlib...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/ranlib...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/ranlib...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/ranlib...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/ranlib...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/ranlib...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/ranlib...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/ranlib...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/ranlib...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/ranlib...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/ranlib...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/ranlib...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/ranlib...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/ranlib...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/ranlib...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/ranlib...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/ranlib...not found Checking for program /opt/gcc/4.7.2/bin/ranlib...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/ranlib...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/ranlib...not found Checking for program /usr/common/usg/altd/1.0/bin/ranlib...not found Checking for program /usr/common/usg/bin/ranlib...not found Checking for program /usr/common/mss/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/moab/7.2.3-r19/bin/ranlib...not found Checking for program /opt/moab/7.2.3-r19/sbin/ranlib...not found Checking for program /opt/torque/4.2.3.1/sbin/ranlib...not found Checking for program /opt/torque/4.2.3.1/bin/ranlib...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/ranlib...not found Checking for program /usr/syscom/nsg/sbin/ranlib...not found Checking for program /usr/common/nsg/sbin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /usr/syscom/nsg/bin/ranlib...not found Checking for program /opt/modules/3.2.6.6/bin/ranlib...not found Checking for program /usr/lpp/mmfs/bin/ranlib...not found Checking for program /global/homes/g/gpau/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib -c /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib -c /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a sh: Possible ERROR while running ranlib: ret = 256 error message = {/usr/bin/ranlib: '-c': No such file } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils; SUSE Linux Enterprise PTF) 2.21.1 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. sh: ar -V Executing: ar -V sh: GNU ar (GNU Binutils; SUSE Linux Enterprise PTF) 2.21.1 Copyright 2011 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/common/usg/mercurial/1.8.1/bin/ar...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/ar...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/ar...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/ar...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/ar...not found Checking for program /usr/common/usg/python/2.7.3/bin/ar...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/ar...not found Checking for program /opt/cray/atp/1.6.2/bin/ar...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/ar...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/ar...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/ar...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/ar...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/ar...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/ar...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/ar...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/ar...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/ar...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/ar...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/ar...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/ar...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/ar...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/ar...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/ar...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/ar...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/ar...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/ar...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/ar...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/ar...not found Checking for program /opt/gcc/4.7.2/bin/ar...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/ar...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/ar...not found Checking for program /usr/common/usg/altd/1.0/bin/ar...not found Checking for program /usr/common/usg/bin/ar...not found Checking for program /usr/common/mss/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/moab/7.2.3-r19/bin/ar...not found Checking for program /opt/moab/7.2.3-r19/sbin/ar...not found Checking for program /opt/torque/4.2.3.1/sbin/ar...not found Checking for program /opt/torque/4.2.3.1/bin/ar...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/ar...not found Checking for program /usr/syscom/nsg/sbin/ar...not found Checking for program /usr/common/nsg/sbin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /usr/syscom/nsg/bin/ar...not found Checking for program /opt/modules/3.2.6.6/bin/ar...not found Checking for program /usr/lpp/mmfs/bin/ar...not found Checking for program /global/homes/g/gpau/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/common/usg/mercurial/1.8.1/bin/ranlib...not found Checking for program /usr/common/usg/python/ipython/0.12.1/bin/ranlib...not found Checking for program /usr/common/usg/python/matplotlib/1.1.0/bin/ranlib...not found Checking for program /usr/common/usg/python/scipy/0.11.0/bin/ranlib...not found Checking for program /usr/common/usg/python/numpy/1.6.2/bin/ranlib...not found Checking for program /usr/common/usg/python/2.7.3/bin/ranlib...not found Checking for program /usr/common/usg/darshan/2.2.6/bin/ranlib...not found Checking for program /opt/cray/atp/1.6.2/bin/ranlib...not found Checking for program /opt/cray/switch/1.0-1.0401.36779.2.72.gem/bin/ranlib...not found Checking for program /opt/cray/shared-root/1.0-1.0401.37253.3.50.gem/bin/ranlib...not found Checking for program /opt/cray/pdsh/2.26-1.0401.37449.1.1.gem/bin/ranlib...not found Checking for program /opt/cray/nodehealth/5.0-1.0401.38460.12.18.gem/bin/ranlib...not found Checking for program /opt/cray/lbcd/2.1-1.0401.35360.1.2.gem/bin/ranlib...not found Checking for program /opt/cray/hosts/1.0-1.0401.35364.1.115.gem/bin/ranlib...not found Checking for program /opt/cray/configuration/1.0-1.0401.35391.1.2.gem/bin/ranlib...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/sbin/ranlib...not found Checking for program /opt/cray/ccm/2.2.0-1.0401.37254.2.142/bin/ranlib...not found Checking for program /opt/cray/audit/1.0.0-1.0401.37969.2.32.gem/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin/ranlib...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/sbin/ranlib...not found Checking for program /opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/bin/ranlib...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/sbin/ranlib...not found Checking for program /opt/cray/csa/3.0.0-1_2.0401.37452.4.50.gem/bin/ranlib...not found Checking for program /opt/cray/job/1.5.5-0.1_2.0401.35380.1.10.gem/bin/ranlib...not found Checking for program /opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin/ranlib...not found Checking for program /opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin/ranlib...not found Checking for program /opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin/ranlib...not found Checking for program /opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin/ranlib...not found Checking for program /opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin/ranlib...not found Checking for program /opt/gcc/4.7.2/bin/ranlib...not found Checking for program /opt/cray/xt-asyncpe/5.19/bin/ranlib...not found Checking for program /usr/common/usg/cmake/2.8.10.1/bin/ranlib...not found Checking for program /usr/common/usg/altd/1.0/bin/ranlib...not found Checking for program /usr/common/usg/bin/ranlib...not found Checking for program /usr/common/mss/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/moab/7.2.3-r19/bin/ranlib...not found Checking for program /opt/moab/7.2.3-r19/sbin/ranlib...not found Checking for program /opt/torque/4.2.3.1/sbin/ranlib...not found Checking for program /opt/torque/4.2.3.1/bin/ranlib...not found Checking for program /opt/cray/eslogin/eswrap/1.0.10/bin/ranlib...not found Checking for program /usr/syscom/nsg/sbin/ranlib...not found Checking for program /usr/common/nsg/sbin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /usr/syscom/nsg/bin/ranlib...not found Checking for program /opt/modules/3.2.6.6/bin/ranlib...not found Checking for program /usr/lpp/mmfs/bin/ranlib...not found Checking for program /global/homes/g/gpau/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conf1.o Executing: /usr/bin/ar cr /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conf1.o sh: sh: /usr/bin/ranlib /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a Executing: /usr/bin/ranlib /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconf1.a sh: sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -lconf1 Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1212) TESTING: checkSharedLinker from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1212) Check that the linker can produce shared libraries sh: uname -s Executing: uname -s sh: Linux Checking shared linker /opt/cray/xt-asyncpe/5.19/bin/cc using flags ['-shared'] Checking for program /opt/cray/xt-asyncpe/5.19/bin/cc...found Defined make macro "LD_SHARED" to "/opt/cray/xt-asyncpe/5.19/bin/cc" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -shared -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -shared -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Possible ERROR while running linker: /usr/bin/ld: /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a(darshan-mpi-init-finalize.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a: could not read symbols: Bad value collect2: error: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a(darshan-mpi-init-finalize.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a: could not read symbols: Bad value collect2: error: ld returned 1 exit status } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -shared -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting linker flag -shared due to nonzero status from link sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Possible ERROR while running linker: /usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Deleting "LD_SHARED" Checking shared linker /opt/cray/xt-asyncpe/5.19/bin/cc using flags ['-dynamic'] Checking for program /opt/cray/xt-asyncpe/5.19/bin/cc...found Defined make macro "LD_SHARED" to "/opt/cray/xt-asyncpe/5.19/bin/cc" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -dynamic -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -dynamic -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid C linker flag -dynamic sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -dynamic -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -dynamic -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Possible ERROR while running linker: /usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Deleting "LD_SHARED" Checking shared linker /opt/cray/xt-asyncpe/5.19/bin/cc using flags ['-qmkshrobj'] Checking for program /opt/cray/xt-asyncpe/5.19/bin/cc...found Defined make macro "LD_SHARED" to "/opt/cray/xt-asyncpe/5.19/bin/cc" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -qmkshrobj -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -qmkshrobj -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Possible ERROR while running linker: gcc: error: unrecognized command line option '-qmkshrobj' output: ret = 256 error message = {gcc: error: unrecognized command line option '-qmkshrobj' } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -qmkshrobj -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting linker flag -qmkshrobj due to nonzero status from link Rejecting C linker flag -qmkshrobj due to gcc: error: unrecognized command line option '-qmkshrobj' sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Possible ERROR while running linker: /usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Deleting "LD_SHARED" sh: uname -s Executing: uname -s sh: Linux Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C sh: /usr/bin/ar cr /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.a /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o ; /usr/bin/ranlib /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.a Executing: /usr/bin/ar cr /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.a /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o ; /usr/bin/ranlib /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.a sh: sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -lconftest Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -lconftest sh: Using shared linker /usr/bin/ar with flags [] and library extension a sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1290) TESTING: checkSharedLinkerPaths from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1290) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: uname -s Executing: uname -s sh: Linux sh: /opt/cray/xt-asyncpe/5.19/bin/cc -V Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -V sh: Trying C linker flag -Wl,-rpath, sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid C linker flag -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source Popping language C Pushing language Cxx sh: uname -s Executing: uname -s sh: Linux sh: /opt/cray/xt-asyncpe/5.19/bin/cc -V Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -V sh: Trying Cxx linker flag -Wl,-rpath, sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid Cxx linker flag -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source Popping language Cxx Pushing language FC sh: uname -s Executing: uname -s sh: Linux sh: /opt/cray/xt-asyncpe/5.19/bin/cc -V Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -V sh: Trying FC linker flag -Wl,-rpath, sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o sh: Valid FC linker flag -Wl,-rpath,/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1325) TESTING: checkLibC from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1325) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1374) TESTING: checkDynamicLinker from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1374) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers sh: /opt/cray/xt-asyncpe/5.19/bin/cc -E -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -E -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers /scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c sh: # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c" # 1 "" # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c" # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/confdefs.h" 1 # 2 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c" 2 # 1 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conffix.h" 1 # 3 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 347 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 353 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 354 "/usr/include/sys/cdefs.h" 2 3 4 # 348 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 1 3 4 # 213 "/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/scratch/scratchdirs/gpau/petsc-4zH0u9/config.headers/conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for function dlopen in library ['dl'] [] Pushing language C All intermediate test results are stored in /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl sh: Possible ERROR while running linker: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking output: error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); int main() { dlopen() ; return 0; } Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlsym in library ['dl'] [] Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlsym(); int main() { dlsym() ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Checking for function dlclose in library ['dl'] [] Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlclose(); int main() { dlclose() ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries/conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /usr/bin/ar -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl Executing: /usr/bin/ar -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl sh: Possible ERROR while running linker: /usr/bin/ar: no operation specified output: ret = 256 error message = {/usr/bin/ar: no operation specified } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Checking dynamic linker /opt/cray/xt-asyncpe/5.19/bin/cc using flags ['-shared'] Checking for program /opt/cray/xt-asyncpe/5.19/bin/cc...found Defined make macro "DYNAMICLINKER" to "/opt/cray/xt-asyncpe/5.19/bin/cc" sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -shared -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -shared -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl sh: Possible ERROR while running linker: /usr/bin/ld: /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a(darshan-mpi-init-finalize.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a: could not read symbols: Bad value collect2: error: ld returned 1 exit status output: ret = 256 error message = {/usr/bin/ld: /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a(darshan-mpi-init-finalize.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC /usr/common/usg/darshan/2.2.6/lib/libdarshan-mpi-io.a: could not read symbols: Bad value collect2: error: ld returned 1 exit status } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -shared -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting linker flag -shared due to nonzero status from link sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl sh: Possible ERROR while running linker: /usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status output: ret = 256 error message = {/usr/lib/../lib64/crt1.o: In function `_start': /usr/src/packages/BUILD/glibc-2.11.1/csu/../sysdeps/x86_64/elf/start.S:109: undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/libconftest.so' collect2: error: ld returned 1 exit status } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Unable to find working dynamic linker ================================================================================ TEST output from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1420) TESTING: output from config.setCompilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/setCompilers.py:1420) Output module data as defines and substitutions Substituting "CC" with "/opt/cray/xt-asyncpe/5.19/bin/cc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/opt/cray/xt-asyncpe/5.19/bin/cc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/opt/cray/xt-asyncpe/5.19/bin/ftn" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilerFlags.py:65) TESTING: configureCompilerFlags from config.compilerFlags(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilerFlags.py:65) Get the default compiler flags Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc --version Executing: /opt/cray/xt-asyncpe/5.19/bin/cc --version sh: gcc (GCC) 4.7.2 20120920 (Cray Inc.) Copyright (C) 2012 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /opt/cray/xt-asyncpe/5.19/bin/cc gcc (GCC) 4.7.2 20120920 (Cray Inc.) sh: /opt/cray/xt-asyncpe/5.19/bin/cc --help Executing: /opt/cray/xt-asyncpe/5.19/bin/cc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas sh: /opt/cray/xt-asyncpe/5.19/bin/cc --help Executing: /opt/cray/xt-asyncpe/5.19/bin/cc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -O sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Popping language C Pushing language Cxx sh: g++ --version Executing: g++ --version sh: g++ (GCC) 4.7.2 20120920 (Cray Inc.) Copyright (C) 2012 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (GCC) 4.7.2 20120920 (Cray Inc.) sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -Wall sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -O sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Popping language Cxx Pushing language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn --version Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn --version sh: GNU Fortran (GCC) 4.7.2 20120920 (Cray Inc.) Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /opt/cray/xt-asyncpe/5.19/bin/ftn GNU Fortran (GCC) 4.7.2 20120920 (Cray Inc.) sh: /opt/cray/xt-asyncpe/5.19/bin/ftn --help Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . sh: /opt/cray/xt-asyncpe/5.19/bin/ftn --version Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn --version sh: GNU Fortran (GCC) 4.7.2 20120920 (Cray Inc.) Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING sh: /opt/cray/xt-asyncpe/5.19/bin/ftn --version Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn --version sh: GNU Fortran (GCC) 4.7.2 20120920 (Cray Inc.) Copyright (C) 2012 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Trying FC compiler flag -Wall sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Trying FC compiler flag -Wno-unused-dummy-argument sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument sh: /opt/cray/xt-asyncpe/5.19/bin/ftn --help Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn --help sh: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -O sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Added FC compiler flag -O Popping language FC ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/arch.py:32) TESTING: configureArchitecture from PETSc.utilities.arch(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/arch.py:32) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-linux2-c-opt"" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/sharedLibraries.py:42) TESTING: checkSharedDynamicPicOptions from PETSc.utilities.sharedLibraries(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/sharedLibraries.py:42) ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/sharedLibraries.py:63) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/sharedLibraries.py:63) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/sharedLibraries.py:102) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/sharedLibraries.py:102) Checks whether dynamic loading should be used, for which you must - Specify --with-dynamic-loading - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic loading - disabled ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/PETSc/utilities/bmakeDir.py:26) Makes $PETSC_ARCH and subdirectories if it does not exist Changed persistence directory to arch-linux2-c-opt/conf sh: /opt/cray/xt-asyncpe/5.19/bin/cc --help Executing: /opt/cray/xt-asyncpe/5.19/bin/cc --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c: In function 'main': /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c:5:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'x' /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c:5:18: error: 'x' undeclared (first use in this function) /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c:5:18: note: each undeclared identifier is reported only once for each function it appears in } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c: In function 'main': /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c:5:23: warning: unused variable 'x' [-Wunused-variable] } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:306) TESTING: checkCFormatting from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:306) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c sh: Possible ERROR while running compiler: error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c: In function 'main': /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c:6:5: warning: unused variable 'i' [-Wunused-variable] } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:317) TESTING: checkDynamicLoadFlag from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:317) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl sh: Possible ERROR while running linker: /opt/cray/xt-asyncpe/5.19/bin/cc: INFO: Compiling for compute nodes running CLE. Using built-in specs. COLLECT_GCC=/opt/gcc/4.7.2/bin/../snos/bin/gcc COLLECT_LTO_WRAPPER=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/lto-wrapper Target: x86_64-suse-linux Configured with: ../xt-gcc-4.7.2/configure --prefix=/opt/gcc/4.7.2/snos --disable-nls --libdir=/opt/gcc/4.7.2/snos/lib --enable-languages=c,c++,fortran --with-gxx-include-dir=/opt/gcc/4.7.2/snos/include/g++ --with-slibdir=/opt/gcc/4.7.2/snos/lib --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux --with-mpc=/opt/gcc/mpc/0.8.1 --with-mpfr=/opt/gcc/mpfr/2.4.2 --with-gmp=/opt/gcc/gmp/4.3.2 --with-sysroot= Thread model: posix gcc version 4.7.2 20120920 (Cray Inc.) (GCC) COMPILER_PATH=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/ LIBRARY_PATH=/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-u' 'pthread_mutex_trylock' '-u' 'pthread_mutex_destroy' '-u' 'pthread_create' '-march=amdfam10' '-static' '-o' '/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64' '-L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64' '-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64' '-L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64' '-L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64' '-L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64' '-L/usr/common/usg/darshan/2.2.6/lib' '-I' '/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/include' '-I' '/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include' '-I' '/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include' '-I' '/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/include' '-I' '/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include' '-I' '/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/include' '-I' '/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/include' '-I' '/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include' '-I' '/opt/cray-hss-devel/7.0.0/include' '-I' '/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include' '-D' '__x86_64__' '-D' '__CRAYXE' '-D' '__CRAYXT_COMPUTE_LINUX_TARGET' '-D' '__TARGET_LINUX__' '-I' '/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/include' '-I' '/opt/cray/mpt/5.6.4/gni/sma/include' '-I' '/opt/cray/libsci/12.0.00/gnu/47/mc12/include' '-I' '/usr/include/alps' '-L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib' '-L/opt/cray/mpt/5.6.4/gni/sma/lib64' '-L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib' '-L/usr/lib/alps' /opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/collect2 --sysroot= -m elf_x86_64 -static -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -u pthread_mutex_trylock -u pthread_mutex_destroy -u pthread_create /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtbeginT.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../.. -rpath=/opt/gcc/default/snos/lib64 /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl -lrca -L/opt/cray/atp/1.6.2/lib/ --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -u __wrap_fopen -u MPI_Init -u MPI_Wtime -wrap write -wrap open -wrap creat -wrap creat64 -wrap open64 -wrap close -wrap read -wrap lseek -wrap lseek64 -wrap pread -wrap pwrite -wrap readv -wrap writev -wrap __xstat -wrap __lxstat -wrap __fxstat -wrap __xstat64 -wrap __lxstat64 -wrap __fxstat64 -wrap mmap -wrap mmap64 -wrap fopen -wrap fclose -wrap fread -wrap fwrite -wrap fseek -wrap fopen64 -wrap pread64 -wrap pwrite64 -wrap fsync -wrap fdatasync -wrap ncmpi_create -wrap ncmpi_open -wrap ncmpi_close -wrap H5Fcreate -wrap H5Fopen -wrap H5Fclose -lfmpich -lmpichcxx -ldarshan-posix -ldarshan-mpi-io -lz --start-group -lgfortran -ldarshan-mpi-io -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lgfortran -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lm --end-group -lgomp -lpthread --start-group -lgcc -lgcc_eh -lc --end-group /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtend.o /usr/lib/../lib64/crtn.o output: error message = {/opt/cray/xt-asyncpe/5.19/bin/cc: INFO: Compiling for compute nodes running CLE. Using built-in specs. COLLECT_GCC=/opt/gcc/4.7.2/bin/../snos/bin/gcc COLLECT_LTO_WRAPPER=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/lto-wrapper Target: x86_64-suse-linux Configured with: ../xt-gcc-4.7.2/configure --prefix=/opt/gcc/4.7.2/snos --disable-nls --libdir=/opt/gcc/4.7.2/snos/lib --enable-languages=c,c++,fortran --with-gxx-include-dir=/opt/gcc/4.7.2/snos/include/g++ --with-slibdir=/opt/gcc/4.7.2/snos/lib --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux --with-mpc=/opt/gcc/mpc/0.8.1 --with-mpfr=/opt/gcc/mpfr/2.4.2 --with-gmp=/opt/gcc/gmp/4.3.2 --with-sysroot= Thread model: posix gcc version 4.7.2 20120920 (Cray Inc.) (GCC) COMPILER_PATH=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/ LIBRARY_PATH=/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-u' 'pthread_mutex_trylock' '-u' 'pthread_mutex_destroy' '-u' 'pthread_create' '-march=amdfam10' '-static' '-o' '/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64' '-L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64' '-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64' '-L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64' '-L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64' '-L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64' '-L/usr/common/usg/darshan/2.2.6/lib' '-I' '/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/include' '-I' '/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/include' '-I' '/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/include' '-I' '/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/include' '-I' '/opt/cray/gni-headers/2.1-1.0401.5675.4.4.gem/include' '-I' '/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/include' '-I' '/opt/cray/dvs/1.8.6_0.9.0-1.0401.1401.1.120/include' '-I' '/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/include' '-I' '/opt/cray-hss-devel/7.0.0/include' '-I' '/opt/cray/krca/1.0.0-2.0401.36792.3.70.gem/include' '-D' '__x86_64__' '-D' '__CRAYXE' '-D' '__CRAYXT_COMPUTE_LINUX_TARGET' '-D' '__TARGET_LINUX__' '-I' '/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/include' '-I' '/opt/cray/mpt/5.6.4/gni/sma/include' '-I' '/opt/cray/libsci/12.0.00/gnu/47/mc12/include' '-I' '/usr/include/alps' '-L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib' '-L/opt/cray/mpt/5.6.4/gni/sma/lib64' '-L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib' '-L/usr/lib/alps' /opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/collect2 --sysroot= -m elf_x86_64 -static -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -u pthread_mutex_trylock -u pthread_mutex_destroy -u pthread_create /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtbeginT.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../.. -rpath=/opt/gcc/default/snos/lib64 /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl -lrca -L/opt/cray/atp/1.6.2/lib/ --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -u __wrap_fopen -u MPI_Init -u MPI_Wtime -wrap write -wrap open -wrap creat -wrap creat64 -wrap open64 -wrap close -wrap read -wrap lseek -wrap lseek64 -wrap pread -wrap pwrite -wrap readv -wrap writev -wrap __xstat -wrap __lxstat -wrap __fxstat -wrap __xstat64 -wrap __lxstat64 -wrap __fxstat64 -wrap mmap -wrap mmap64 -wrap fopen -wrap fclose -wrap fread -wrap fwrite -wrap fseek -wrap fopen64 -wrap pread64 -wrap pwrite64 -wrap fsync -wrap fdatasync -wrap ncmpi_create -wrap ncmpi_open -wrap ncmpi_close -wrap H5Fcreate -wrap H5Fopen -wrap H5Fclose -lfmpich -lmpichcxx -ldarshan-posix -ldarshan-mpi-io -lz --start-group -lgfortran -ldarshan-mpi-io -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lgfortran -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lm --end-group -lgomp -lpthread --start-group -lgcc -lgcc_eh -lc --end-group /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtend.o /usr/lib/../lib64/crtn.o } Pushing language C Popping language C in /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C compilers: Checking arg /opt/cray/xt-asyncpe/5.19/bin/cc: compilers: Unknown arg /opt/cray/xt-asyncpe/5.19/bin/cc: compilers: Checking arg INFO: compilers: Unknown arg INFO: compilers: Checking arg Compiling compilers: Unknown arg Compiling compilers: Checking arg for compilers: Unknown arg for compilers: Checking arg compute compilers: Unknown arg compute compilers: Checking arg nodes compilers: Unknown arg nodes compilers: Checking arg running compilers: Unknown arg running compilers: Checking arg CLE. compilers: Unknown arg CLE. compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/opt/gcc/4.7.2/bin/../snos/bin/gcc compilers: Unknown arg COLLECT_GCC=/opt/gcc/4.7.2/bin/../snos/bin/gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-suse-linux compilers: Unknown arg x86_64-suse-linux compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../xt-gcc-4.7.2/configure compilers: Unknown arg ../xt-gcc-4.7.2/configure compilers: Checking arg --prefix=/opt/gcc/4.7.2/snos compilers: Unknown arg --prefix=/opt/gcc/4.7.2/snos compilers: Checking arg --disable-nls compilers: Unknown arg --disable-nls compilers: Checking arg --libdir=/opt/gcc/4.7.2/snos/lib compilers: Unknown arg --libdir=/opt/gcc/4.7.2/snos/lib compilers: Checking arg --enable-languages=c,c++,fortran compilers: Unknown arg --enable-languages=c,c++,fortran compilers: Checking arg --with-gxx-include-dir=/opt/gcc/4.7.2/snos/include/g++ compilers: Unknown arg --with-gxx-include-dir=/opt/gcc/4.7.2/snos/include/g++ compilers: Checking arg --with-slibdir=/opt/gcc/4.7.2/snos/lib compilers: Unknown arg --with-slibdir=/opt/gcc/4.7.2/snos/lib compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-__cxa_atexit compilers: Unknown arg --enable-__cxa_atexit compilers: Checking arg x86_64-suse-linux compilers: Unknown arg x86_64-suse-linux compilers: Checking arg --with-mpc=/opt/gcc/mpc/0.8.1 compilers: Unknown arg --with-mpc=/opt/gcc/mpc/0.8.1 compilers: Checking arg --with-mpfr=/opt/gcc/mpfr/2.4.2 compilers: Unknown arg --with-mpfr=/opt/gcc/mpfr/2.4.2 compilers: Checking arg --with-gmp=/opt/gcc/gmp/4.3.2 compilers: Unknown arg --with-gmp=/opt/gcc/gmp/4.3.2 compilers: Checking arg --with-sysroot= compilers: Unknown arg --with-sysroot= compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.7.2 compilers: Unknown arg 4.7.2 compilers: Checking arg 20120920 compilers: Unknown arg 20120920 compilers: Checking arg (Cray compilers: Unknown arg (Cray compilers: Checking arg Inc.) compilers: Unknown arg Inc.) compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/ compilers: Unknown arg COMPILER_PATH=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/ compilers: Checking arg LIBRARY_PATH=/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/collect2 compilers: Unknown arg /opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/collect2 compilers: Checking arg --sysroot= compilers: Unknown arg --sysroot= compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest compilers: Unknown arg /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg pthread_mutex_trylock compilers: Unknown arg pthread_mutex_trylock compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg pthread_mutex_destroy compilers: Unknown arg pthread_mutex_destroy compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg pthread_create compilers: Unknown arg pthread_create compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtbeginT.o compilers: Unknown arg /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtbeginT.o compilers: Checking arg -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 compilers: Found library directory: -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 compilers: Checking arg -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 compilers: Found library directory: -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 compilers: Checking arg -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 compilers: Found library directory: -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 compilers: Checking arg -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 compilers: Found library directory: -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 compilers: Found library directory: -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 compilers: Checking arg -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 compilers: Checking arg -L/usr/common/usg/darshan/2.2.6/lib compilers: Found library directory: -L/usr/common/usg/darshan/2.2.6/lib compilers: Checking arg -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib compilers: Found library directory: -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib compilers: Checking arg -L/opt/cray/mpt/5.6.4/gni/sma/lib64 compilers: Found library directory: -L/opt/cray/mpt/5.6.4/gni/sma/lib64 compilers: Checking arg -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib compilers: Found library directory: -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib compilers: Checking arg -L/usr/lib/alps compilers: Found library directory: -L/usr/lib/alps compilers: Checking arg -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 compilers: Found library directory: -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 compilers: Checking arg -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64 compilers: Found library directory: -L/opt/gcc/4.7.2/snos/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../.. compilers: Found library directory: -L/opt/gcc/4.7.2/snos/lib compilers: Checking arg -rpath=/opt/gcc/default/snos/lib64 compilers: Unknown arg -rpath=/opt/gcc/default/snos/lib64 compilers: Checking arg /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o compilers: Unknown arg /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lrca compilers: Found library : -lrca compilers: Checking arg -L/opt/cray/atp/1.6.2/lib/ compilers: Found library directory: -L/opt/cray/atp/1.6.2/lib compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lAtpSigHCommData compilers: Found library : -lAtpSigHCommData compilers: Checking arg -lAtpSigHandler compilers: Found library : -lAtpSigHandler compilers: Checking arg -ldarshan-mpi-io compilers: Found library : -ldarshan-mpi-io compilers: Checking arg -lz compilers: Found library : -lz compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg __wrap_fopen compilers: Unknown arg __wrap_fopen compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg MPI_Init compilers: Unknown arg MPI_Init compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg MPI_Wtime compilers: Unknown arg MPI_Wtime compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg write compilers: Unknown arg write compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg open compilers: Unknown arg open compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg creat compilers: Unknown arg creat compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg creat64 compilers: Unknown arg creat64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg open64 compilers: Unknown arg open64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg close compilers: Unknown arg close compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg read compilers: Unknown arg read compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg lseek compilers: Unknown arg lseek compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg lseek64 compilers: Unknown arg lseek64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg pread compilers: Unknown arg pread compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg pwrite compilers: Unknown arg pwrite compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg readv compilers: Unknown arg readv compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg writev compilers: Unknown arg writev compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg __xstat compilers: Unknown arg __xstat compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg __lxstat compilers: Unknown arg __lxstat compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg __fxstat compilers: Unknown arg __fxstat compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg __xstat64 compilers: Unknown arg __xstat64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg __lxstat64 compilers: Unknown arg __lxstat64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg __fxstat64 compilers: Unknown arg __fxstat64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg mmap compilers: Unknown arg mmap compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg mmap64 compilers: Unknown arg mmap64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fopen compilers: Unknown arg fopen compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fclose compilers: Unknown arg fclose compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fread compilers: Unknown arg fread compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fwrite compilers: Unknown arg fwrite compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fseek compilers: Unknown arg fseek compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fopen64 compilers: Unknown arg fopen64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg pread64 compilers: Unknown arg pread64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg pwrite64 compilers: Unknown arg pwrite64 compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fsync compilers: Unknown arg fsync compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg fdatasync compilers: Unknown arg fdatasync compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg ncmpi_create compilers: Unknown arg ncmpi_create compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg ncmpi_open compilers: Unknown arg ncmpi_open compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg ncmpi_close compilers: Unknown arg ncmpi_close compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg H5Fcreate compilers: Unknown arg H5Fcreate compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg H5Fopen compilers: Unknown arg H5Fopen compilers: Checking arg -wrap compilers: Unknown arg -wrap compilers: Checking arg H5Fclose compilers: Unknown arg H5Fclose compilers: Checking arg -lfmpich compilers: Found library : -lfmpich compilers: Checking arg -lmpichcxx compilers: Found library : -lmpichcxx compilers: Checking arg -ldarshan-posix compilers: Found library : -ldarshan-posix compilers: Checking arg -ldarshan-mpi-io compilers: Checking arg -lz compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -lgfortran compilers: Found library : -lgfortran compilers: Checking arg -ldarshan-mpi-io compilers: Checking arg -lscicpp_gnu compilers: Found library : -lscicpp_gnu compilers: Checking arg -lsci_gnu_mp compilers: Found library : -lsci_gnu_mp compilers: Checking arg -lstdc++ compilers: Found library : -lstdc++ compilers: Checking arg -lgfortran compilers: Checking arg -lmpich_gnu_47 compilers: Found library : -lmpich_gnu_47 compilers: Checking arg -lmpl compilers: Found library : -lmpl compilers: Checking arg -lrt compilers: Found library : -lrt compilers: Checking arg -lsma compilers: Found library : -lsma compilers: Checking arg -lxpmem compilers: Found library : -lxpmem compilers: Checking arg -ldmapp compilers: Found library : -ldmapp compilers: Checking arg -lugni compilers: Found library : -lugni compilers: Checking arg -lpmi compilers: Found library : -lpmi compilers: Checking arg -lalpslli compilers: Found library : -lalpslli compilers: Checking arg -lalpsutil compilers: Found library : -lalpsutil compilers: Checking arg -ludreg compilers: Found library : -ludreg compilers: Checking arg -lpthread compilers: Found library : -lpthread compilers: Checking arg -lm compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg -lgomp compilers: Found library : -lgomp compilers: Checking arg -lpthread compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_eh compilers: Found library : -lgcc_eh compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtend.o compilers: Unknown arg /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64', '-L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64', '-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64', '-L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64', '-L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64', '-L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64', '-L/usr/common/usg/darshan/2.2.6/lib', '-L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib', '-L/opt/cray/mpt/5.6.4/gni/sma/lib64', '-L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib', '-L/usr/lib/alps', '-L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2', '-L/opt/gcc/4.7.2/snos/lib64', '-L/opt/gcc/4.7.2/snos/lib', '-ldl', '-lrca', '-L/opt/cray/atp/1.6.2/lib', '-lAtpSigHCommData', '-lAtpSigHandler', '-ldarshan-mpi-io', '-lz', '-lfmpich', '-lmpichcxx', '-ldarshan-posix', '-lgfortran', '-lscicpp_gnu', '-lsci_gnu_mp', '-lstdc++', '-lmpich_gnu_47', '-lmpl', '-lrt', '-lsma', '-lxpmem', '-ldmapp', '-lugni', '-lpmi', '-lalpslli', '-lalpsutil', '-ludreg', '-lpthread', '-lgomp', '-lgcc_eh'] compilers: Check that C libraries can be used from Fortran Pushing language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest Executing: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest sh: Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:1282) TESTING: checkDependencyGenerationFlag from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:1282) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C sh: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: Valid C linker flag -MMD Testing C compiler flag -MMD sh: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: /opt/cray/xt-asyncpe/5.19/bin/cc -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.libraries -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -MMD /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: Possible ERROR while running linker: /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Text_Globals' /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Data_Globals' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest' collect2: error: ld returned 1 exit status output: ret = 256 error message = {/opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Text_Globals' /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Data_Globals' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest' collect2: error: ld returned 1 exit status } Pushing language CXX Popping language CXX in g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting linker flag -MMD due to nonzero status from link Rejected Cxx compiler flag -MMD because linker cannot handle it Trying Cxx compiler flag -M sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -M -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -M -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: Possible ERROR while running linker: g++: warning: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o: linker input file unused because linking not done output: error message = {g++: warning: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o: linker input file unused because linking not done } Pushing language CXX Popping language CXX in g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -M -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting Cxx linker flag -M due to g++: warning: /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o: linker input file unused because linking not done Rejected Cxx compiler flag -M because linker cannot handle it Popping language Cxx Pushing language FC Trying FC compiler flag -MMD sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Pushing language FC Popping language FC sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest -MMD -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: Valid FC linker flag -MMD Testing FC compiler flag -MMD sh: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -MMD /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F Executing: /opt/cray/xt-asyncpe/5.19/bin/ftn -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -fPIC -Wall -Wno-unused-variable -Wno-unused-dummy-argument -O -MMD /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.F sh: Successful compile: Source: program main end Popping language FC sh: g++ --help Executing: g++ --help sh: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language Cxx sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc sh: Possible ERROR while running compiler: ret = 256 error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc: In function 'int main()': /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc:5:18: error: expected initializer before 'x' } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc: In function 'int main()': /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc:5:23: warning: unused variable 'x' [-Wunused-variable] } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:355) TESTING: checkCxxNamespace from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:355) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:330) TESTING: checkCxxOptionalExtensions from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:330) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers/conftest.c sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:119) TESTING: checkCxxStaticInline from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:119) Check for C++ keyword: static inline Pushing language Cxx sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc sh: Possible ERROR while running compiler: error message = {/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc: In function 'int main()': /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc:6:5: warning: unused variable 'i' [-Wunused-variable] } Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { int i = foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:370) TESTING: checkCxxLibraries from config.compilers(/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py:370) Determines the libraries needed to link with C++ Pushing language Cxx sh: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc Executing: g++ -c -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers -I/scratch/scratchdirs/gpau/petsc-4zH0u9/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.cc sh: Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX sh: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Executing: g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl sh: Possible ERROR while running linker: Using built-in specs. COLLECT_GCC=/opt/gcc/4.7.2/bin/../snos/bin/g++ COLLECT_LTO_WRAPPER=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/lto-wrapper Target: x86_64-suse-linux Configured with: ../xt-gcc-4.7.2/configure --prefix=/opt/gcc/4.7.2/snos --disable-nls --libdir=/opt/gcc/4.7.2/snos/lib --enable-languages=c,c++,fortran --with-gxx-include-dir=/opt/gcc/4.7.2/snos/include/g++ --with-slibdir=/opt/gcc/4.7.2/snos/lib --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux --with-mpc=/opt/gcc/mpc/0.8.1 --with-mpfr=/opt/gcc/mpfr/2.4.2 --with-gmp=/opt/gcc/gmp/4.3.2 --with-sysroot= Thread model: posix gcc version 4.7.2 20120920 (Cray Inc.) (GCC) COMPILER_PATH=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/ LIBRARY_PATH=/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64' '-L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64' '-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64' '-L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64' '-L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64' '-L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64' '-L/usr/common/usg/darshan/2.2.6/lib' '-L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib' '-L/opt/cray/mpt/5.6.4/gni/sma/lib64' '-L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib' '-L/usr/lib/alps' '-L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2' '-L/opt/gcc/4.7.2/snos/lib64' '-L/opt/gcc/4.7.2/snos/lib' '-L/opt/cray/atp/1.6.2/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/collect2 --sysroot= --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtbegin.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -L/opt/cray/atp/1.6.2/lib -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../.. /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl -lrca -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtend.o /usr/lib/../lib64/crtn.o /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Text_Globals' /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Data_Globals' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest' collect2: error: ld returned 1 exit status output: ret = 256 error message = {Using built-in specs. COLLECT_GCC=/opt/gcc/4.7.2/bin/../snos/bin/g++ COLLECT_LTO_WRAPPER=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/lto-wrapper Target: x86_64-suse-linux Configured with: ../xt-gcc-4.7.2/configure --prefix=/opt/gcc/4.7.2/snos --disable-nls --libdir=/opt/gcc/4.7.2/snos/lib --enable-languages=c,c++,fortran --with-gxx-include-dir=/opt/gcc/4.7.2/snos/include/g++ --with-slibdir=/opt/gcc/4.7.2/snos/lib --with-system-zlib --enable-shared --enable-__cxa_atexit x86_64-suse-linux --with-mpc=/opt/gcc/mpc/0.8.1 --with-mpfr=/opt/gcc/mpfr/2.4.2 --with-gmp=/opt/gcc/gmp/4.3.2 --with-sysroot= Thread model: posix gcc version 4.7.2 20120920 (Cray Inc.) (GCC) COMPILER_PATH=/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/ LIBRARY_PATH=/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64' '-L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64' '-L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64' '-L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64' '-L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64' '-L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64' '-L/usr/common/usg/darshan/2.2.6/lib' '-L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib' '-L/opt/cray/mpt/5.6.4/gni/sma/lib64' '-L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib' '-L/usr/lib/alps' '-L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2' '-L/opt/gcc/4.7.2/snos/lib64' '-L/opt/gcc/4.7.2/snos/lib' '-L/opt/cray/atp/1.6.2/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /opt/gcc/4.7.2/snos/libexec/gcc/x86_64-suse-linux/4.7.2/collect2 --sysroot= --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtbegin.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -L/opt/cray/atp/1.6.2/lib -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/../../.. /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -ldl -lrca -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2/crtend.o /usr/lib/../lib64/crtn.o /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Text_Globals' /opt/cray/atp/1.6.2/lib/libAtpSigHandler.so: undefined reference to `_ATP_Data_Globals' /usr/bin/ld: link errors found, deleting executable `/scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest' collect2: error: ld returned 1 exit status } Pushing language CXX Popping language CXX in g++ -o /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /scratch/scratchdirs/gpau/petsc-4zH0u9/config.compilers/conftest.o -L/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/lib64 -L/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/lib64 -L/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/lib64 -L/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/lib64 -L/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/lib64 -L/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/lib64 -L/usr/common/usg/darshan/2.2.6/lib -L/opt/cray/mpt/5.6.4/gni/mpich2-gnu/47/lib -L/opt/cray/mpt/5.6.4/gni/sma/lib64 -L/opt/cray/libsci/12.0.00/gnu/47/mc12/lib -L/usr/lib/alps -L/opt/gcc/4.7.2/snos/lib/gcc/x86_64-suse-linux/4.7.2 -L/opt/gcc/4.7.2/snos/lib64 -L/opt/gcc/4.7.2/snos/lib -ldl -lrca -L/opt/cray/atp/1.6.2/lib -lAtpSigHCommData -lAtpSigHandler -ldarshan-mpi-io -lz -lfmpich -lmpichcxx -ldarshan-posix -lgfortran -lscicpp_gnu -lsci_gnu_mp -lstdc++ -lmpich_gnu_47 -lmpl -lrt -lsma -lxpmem -ldmapp -lugni -lpmi -lalpslli -lalpsutil -ludreg -lpthread -lgomp -lgcc_eh -ldl Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx **** Configure header conftest.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux2-c-opt" #endif #ifndef PETSC_DIR #define PETSC_DIR "/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #endif **** C specific Configure header conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Mismatched single quotes in C library string ******************************************************************************* File "/global/homes/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/configure.py", line 293, in petsc_configure framework.configure(out = sys.stdout) File "/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/framework.py", line 933, in configure child.configure() File "/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py", line 1343, in configure self.executeTest(self.checkCxxLibraries) File "/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/global/u1/g/gpau/tough_codes/esd-tough3/build/Linux-x86_64-MPI-eco2n-Release/toughlib/tpls/petsc/petsc-3.4.1-source/config/BuildSystem/config/compilers.py", line 381, in checkCxxLibraries if output.count('\'')%2: raise RuntimeError('Mismatched single quotes in C library string')