Petsc program is starting... Command-line options: -E 21.5 -coarsemeshfile /lustre/janus_scratch/fako9399/solidcube/coarse.exo -coordMove 0,0,-0.05 -coordScale 20,20,20 -finemeshfile /lustre/janus_scratch/fako9399/solidcube/fine.exo -ksp_type fgmres -ksp_view -log_summary -meshrefine 3 -mg_coarse_ksp_max_it 2 -mg_coarse_ksp_rtol 0.1 -mg_coarse_ksp_type gmres -mg_coarse_pc_type asm -mg_coarse_sub_ksp_type preonly -mg_coarse_sub_pc_factor_levels 1 -mg_coarse_sub_pc_factor_mat_ordering_type rcm -mg_coarse_sub_pc_type ilu -mg_levels_1_ksp_max_it 1 -mg_levels_1_ksp_type richardson -mg_levels_1_pc_type asm -mg_levels_1_sub_ksp_type preonly -mg_levels_1_sub_pc_factor_levels 1 -mg_levels_1_sub_pc_factor_mat_ordering_type rcm -mg_levels_1_sub_pc_type ilu -nu 0.4 -overlap 1 -pc_mg_log -pc_type mg -solutionfile /lustre/janus_scratch/fako9399/solidcube/solution.vtk ------------------------------------------------- elastic_modulus 21.5 poisson_ratio 0.4 overlap 1 Multi grids are initializing... reading mesh... coordScale (20, 20, 20) coordMove (0, 0, -0.05) reading mesh completed distributing mesh... [0]: [0 , 1786524, 1786524, 2092865 ] [0]: begin SpmcsMeshCreatePartition [0]: end SpmcsMeshCreatePartition [0]: begin SpmcsSFSetGraph [0]: end SpmcsSFSetGraph [0]: begin SpmcsMeshCreatePartitionClosure [0]: end SpmcsMeshCreatePartitionClosure [0]: begin SpmcsSFConvertPartition [0]: end SpmcsSFConvertPartition [0]: begin SpmcsSFDistributeSection [0]: end PetscSFDistributeSection [0]: begin SpmcsMeshDistributeField begin DistributeCoordsSection end DistributeCoordsSection begin DistributeCoordsVec end DistributeCoordsVec [0]: end SpmcsMeshDistributeField [0]: begin SpmcsMeshDistributeLabels [0]: end SpmcsMeshDistributeLabels fine mesh completed ... distributing mesh completed reading coarse mesh... coordScale (20, 20, 20) coordMove (0, 0, -0.05) reading coarse mesh completed distributing coarse mesh... [0]: [0 , 210912, 210912, 248171 ] [0]: begin SpmcsMeshCreatePartition [0]: end SpmcsMeshCreatePartition [0]: begin SpmcsSFSetGraph [0]: end SpmcsSFSetGraph [0]: begin SpmcsMeshCreatePartitionClosure [0]: end SpmcsMeshCreatePartitionClosure [0]: begin SpmcsSFConvertPartition [0]: end SpmcsSFConvertPartition [0]: begin SpmcsSFDistributeSection [0]: end PetscSFDistributeSection [0]: begin SpmcsMeshDistributeField begin DistributeCoordsSection end DistributeCoordsSection begin DistributeCoordsVec end DistributeCoordsVec [0]: end SpmcsMeshDistributeField [0]: begin SpmcsMeshDistributeLabels [0]: end SpmcsMeshDistributeLabels distributing coarse mesh completed begin mesh refining end mesh refining creating problem creating problem completed Multi grids are done ComputeRHS is called ComputeMatrix is called Jac size: rows 455735973 Column 455735973 deal with boundary completed boundary completed ComputeMatrix begin createInterpolationBetweenTwoLevelMesh end createInterpolationBetweenTwoLevelMesh -------------------------------------------------------------------------- mpirun noticed that process rank 96 with PID 12728 on node node1526 exited on signal 9 (Killed). -------------------------------------------------------------------------- -------------------------------------------------------------------------- The InfiniBand retry count between two MPI processes has been exceeded. "Retry count" is defined in the InfiniBand spec 1.2 (section 12.7.38): The total number of times that the sender wishes the receiver to retry timeout, packet sequence, etc. errors before posting a completion error. This error typically means that there is something awry within the InfiniBand fabric itself. You should note the hosts on which this error has occurred; it has been observed that rebooting or removing a particular host from the job can sometimes resolve this issue. Two MCA parameters can be used to control Open MPI's behavior with respect to the retry count: * btl_openib_ib_retry_count - The number of times the sender will attempt to retry (defaulted to 7, the maximum value). * btl_openib_ib_timeout - The local ACK timeout parameter (defaulted to 10). The actual timeout value used is calculated as: 4.096 microseconds * (2^btl_openib_ib_timeout) See the InfiniBand spec 1.2 (section 12.7.34) for more details. Below is some information about the host that raised the error and the peer to which it was connected: Local host: node1273 Local device: mlx4_0 Peer host: node1272 You may need to consult with your system administrator to get this problem fixed. -------------------------------------------------------------------------- [[63908,1],977][btl_openib_component.c:3227:handle_wc] from node1419 to: node1418 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 333154304 opcode 369 vendor error 129 qp_idx 0 [[63908,1],257][btl_openib_component.c:3227:handle_wc] from node1063 to: node1020 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 55229824 opcode 378 vendor error 129 qp_idx 0 [[63908,1],587][btl_openib_component.c:3227:handle_wc] from node1273 to: node1272 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 431301504 opcode 262555 vendor error 129 qp_idx 0 [[63908,1],979][btl_openib_component.c:3227:handle_wc] from node1419 to: node1418 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 99243520 opcode 369 vendor error 129 qp_idx 0 [[63908,1],259][btl_openib_component.c:3227:handle_wc] from node1063 to: node1020 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 503004288 opcode 372 vendor error 129 qp_idx 0 [527]PETSC ERROR: [906]PETSC ERROR: ------------------------------------------------------------------------ [906]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [906]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [906]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[906]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [906]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [906]PETSC ERROR: to get more information on the crash. [906]PETSC ERROR: --------------------- Error Message ------------------------------------ [906]PETSC ERROR: Signal received! [906]PETSC ERROR: ------------------------------------------------------------------------ [906]PETSC ERROR: [326]PETSC ERROR: ------------------------------------------------------------------------ [326]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [326]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [326]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[326]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [326]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [326]PETSC ERROR: ------------------------------------------------------------------------ [[63908,1],945][btl_openib_component.c:3227:handle_wc] from node1219 to: node1424 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 235194112 opcode 372 vendor error 129 qp_idx 0 [907]PETSC ERROR: ------------------------------------------------------------------------ [907]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [907]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [907]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[907]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [907]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [907]PETSC ERROR: to get more information on the crash. [907]PETSC ERROR: --------------------- Error Message ------------------------------------ [907]PETSC ERROR: Signal received! [907]PETSC ERROR: ------------------------------------------------------------------------ [907]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [907]PETSC ERROR: See docs/changes/index.html for recent updates. [907]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [907]PETSC ERROR: See docs/index.html for manual pages. [907]PETSC ERROR: ------------------------------------------------------------------------ [907]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [907]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [907]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [907]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [708]PETSC ERROR: ------------------------------------------------------------------------ [708]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [708]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [708]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[331]PETSC ERROR: ------------------------------------------------------------------------ [331]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [331]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [331]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[331]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [331]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [331]PETSC ERROR: to get more information on the crash. [331]PETSC ERROR: [527]PETSC ERROR: [[63908,1],947][btl_openib_component.c:3227:handle_wc] from node1219 to: node1424 error polling LP CQ with status RETRY EXCEEDED ERROR status number 12 for wr_id 270965376 opcode 411 vendor error 129 qp_idx 0 [910]PETSC ERROR: ------------------------------------------------------------------------ [910]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [910]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [910]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[910]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [910]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [910]PETSC ERROR: to get more information on the crash. [910]PETSC ERROR: --------------------- Error Message ------------------------------------ [910]PETSC ERROR: Signal received! [910]PETSC ERROR: ------------------------------------------------------------------------ [910]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [910]PETSC ERROR: See docs/changes/index.html for recent updates. [910]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [910]PETSC ERROR: See docs/index.html for manual pages. [910]PETSC ERROR: ------------------------------------------------------------------------ [910]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [910]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [910]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [910]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [910]PETSC ERROR: ------------------------------------------------------------------------ [910]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [709]PETSC ERROR: ------------------------------------------------------------------------ [709]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [709]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [709]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[709]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [709]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [709]PETSC ERROR: to get more information on the crash. [324]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [911]PETSC ERROR: ------------------------------------------------------------------------ [911]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [911]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [911]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[911]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [911]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [911]PETSC ERROR: to get more information on the crash. [911]PETSC ERROR: --------------------- Error Message ------------------------------------ [911]PETSC ERROR: Signal received! [911]PETSC ERROR: ------------------------------------------------------------------------ [911]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [911]PETSC ERROR: See docs/changes/index.html for recent updates. [911]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [911]PETSC ERROR: See docs/index.html for manual pages. [911]PETSC ERROR: ------------------------------------------------------------------------ [911]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [911]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [911]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [911]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [911]PETSC ERROR: ------------------------------------------------------------------------ [911]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [710]PETSC ERROR: ------------------------------------------------------------------------ [710]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [710]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [710]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[710]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [710]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [710]PETSC ERROR: to get more information on the crash. [713]PETSC ERROR: ------------------------------------------------------------------------ [713]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [713]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [713]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[713]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [713]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [713]PETSC ERROR: to get more information on the crash. --------------------- Error Message ------------------------------------ [331]PETSC ERROR: Signal received! [331]PETSC ERROR: ------------------------------------------------------------------------ [331]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [331]PETSC ERROR: See docs/changes/index.html for recent updates. [331]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [331]PETSC ERROR: See docs/index.html for manual pages. [331]PETSC ERROR: ------------------------------------------------------------------------ [331]PETSC ERROR: [527]PETSC ERROR: [900]PETSC ERROR: ------------------------------------------------------------------------ [900]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [900]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [900]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[900]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [900]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [900]PETSC ERROR: to get more information on the crash. [900]PETSC ERROR: --------------------- Error Message ------------------------------------ [900]PETSC ERROR: Signal received! [900]PETSC ERROR: ------------------------------------------------------------------------ [900]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [900]PETSC ERROR: See docs/changes/index.html for recent updates. [900]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [900]PETSC ERROR: See docs/index.html for manual pages. [900]PETSC ERROR: ------------------------------------------------------------------------ [900]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [900]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [900]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [900]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [900]PETSC ERROR: ------------------------------------------------------------------------ [900]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [718]PETSC ERROR: ------------------------------------------------------------------------ [718]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [718]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [718]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[718]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [718]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [718]PETSC ERROR: to get more information on the crash. [718]PETSC ERROR: ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [331]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [331]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [331]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [331]PETSC ERROR: ------------------------------------------------------------------------ [331]PETSC ERROR: User provided function() line 0 in unknown directory unknown file Try option -start_in_debugger or -on_error_attach_debugger [901]PETSC ERROR: ------------------------------------------------------------------------ [901]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [901]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [901]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[901]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [901]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [901]PETSC ERROR: to get more information on the crash. [901]PETSC ERROR: --------------------- Error Message ------------------------------------ [901]PETSC ERROR: Signal received! [901]PETSC ERROR: ------------------------------------------------------------------------ [901]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [901]PETSC ERROR: See docs/changes/index.html for recent updates. [901]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [901]PETSC ERROR: See docs/index.html for manual pages. [901]PETSC ERROR: ------------------------------------------------------------------------ [901]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [901]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [901]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [901]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [901]PETSC ERROR: ------------------------------------------------------------------------ [901]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [709]PETSC ERROR: --------------------- Error Message ------------------------------------ [709]PETSC ERROR: Signal received! [709]PETSC ERROR: ------------------------------------------------------------------------ [709]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [709]PETSC ERROR: See docs/changes/index.html for recent updates. [709]PETSC ERROR: ------------------------------------------------------------------------ [324]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [324]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [324]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[324]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [324]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [324]PETSC ERROR: to get more information on the crash. [527]PETSC ERROR: [902]PETSC ERROR: ------------------------------------------------------------------------ [902]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [902]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [902]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[902]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [902]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [902]PETSC ERROR: to get more information on the crash. [902]PETSC ERROR: --------------------- Error Message ------------------------------------ [902]PETSC ERROR: Signal received! [902]PETSC ERROR: ------------------------------------------------------------------------ [902]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [902]PETSC ERROR: See docs/changes/index.html for recent updates. [902]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [902]PETSC ERROR: See docs/index.html for manual pages. [902]PETSC ERROR: ------------------------------------------------------------------------ [902]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [902]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [902]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [902]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [902]PETSC ERROR: ------------------------------------------------------------------------ [902]PETSC ERROR: User provided function() line 0 in unknown directory unknown file -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 324 in communicator MPI_COMM_WORLD with errorcode 59. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [710]PETSC ERROR: --------------------- Error Message ------------------------------------ [710]PETSC ERROR: Signal received! [710]PETSC ERROR: ------------------------------------------------------------------------ [710]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [710]PETSC ERROR: See docs/changes/index.html for recent updates. [710]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [710]PETSC ERROR: See docs/index.html for manual pages. [710]PETSC ERROR: ------------------------------------------------------------------------ [710]PETSC ERROR: [324]PETSC ERROR: --------------------- Error Message ------------------------------------ [324]PETSC ERROR: Signal received! [324]PETSC ERROR: ------------------------------------------------------------------------ [324]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [324]PETSC ERROR: See docs/changes/index.html for recent updates. [324]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [324]PETSC ERROR: See docs/index.html for manual pages. [324]PETSC ERROR: ------------------------------------------------------------------------ [324]PETSC ERROR: ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [324]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [324]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [324]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [324]PETSC ERROR: ------------------------------------------------------------------------ [324]PETSC ERROR: User provided function() line 0 in unknown directory unknown file or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrindPetsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [906]PETSC ERROR: See docs/changes/index.html for recent updates. [906]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [906]PETSC ERROR: See docs/index.html for manual pages. [906]PETSC ERROR: ------------------------------------------------------------------------ [906]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [906]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [906]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [906]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [906]PETSC ERROR: ------------------------------------------------------------------------ [906]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [714]PETSC ERROR: ------------------------------------------------------------------------ [714]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [714]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [714]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[714]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [714]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [714]PETSC ERROR: to get more information on the crash. to get more information on the crash. [326]PETSC ERROR: --------------------- Error Message ------------------------------------ [326]PETSC ERROR: Signal received! [326]PETSC ERROR: ------------------------------------------------------------------------ [326]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [326]PETSC ERROR: See docs/changes/index.html for recent updates. [326]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [326]PETSC ERROR: See docs/index.html for manual pages. [326]PETSC ERROR: ------------------------------------------------------------------------ [326]PETSC ERROR: ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [326]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [326]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [326]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [326]PETSC ERROR: ------------------------------------------------------------------------ [326]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [527]PETSC ERROR: [908]PETSC ERROR: ------------------------------------------------------------------------ [908]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [908]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [908]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[908]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [908]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [908]PETSC ERROR: to get more information on the crash. [908]PETSC ERROR: --------------------- Error Message ------------------------------------ [908]PETSC ERROR: Signal received! [908]PETSC ERROR: ------------------------------------------------------------------------ [908]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [908]PETSC ERROR: See docs/changes/index.html for recent updates. [908]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [908]PETSC ERROR: See docs/index.html for manual pages. [908]PETSC ERROR: ------------------------------------------------------------------------ [908]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [908]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [908]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [908]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [908]PETSC ERROR: ------------------------------------------------------------------------ [908]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [713]PETSC ERROR: --------------------- Error Message ------------------------------------ [713]PETSC ERROR: Signal received! [713]PETSC ERROR: ------------------------------------------------------------------------ [713]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [713]PETSC ERROR: See docs/changes/index.html for recent updates. [713]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [713]PETSC ERROR: See docs/index.html for manual pages. [713]PETSC ERROR: ------------------------------------------------------------------------ [713]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [713]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [713]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [713]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [713]PETSC ERROR: ------------------------------------------------------------------------ [713]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [909]PETSC ERROR: ------------------------------------------------------------------------ [909]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [909]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [909]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[909]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [909]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [909]PETSC ERROR: to get more information on the crash. [909]PETSC ERROR: --------------------- Error Message ------------------------------------ [909]PETSC ERROR: Signal received! [909]PETSC ERROR: ------------------------------------------------------------------------ [909]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [909]PETSC ERROR: See docs/changes/index.html for recent updates. [909]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [909]PETSC ERROR: See docs/index.html for manual pages. [909]PETSC ERROR: ------------------------------------------------------------------------ [909]PETSC ERROR: ./linearElasticity on a arch-linu named node1211 by fako9399 Tue Jan 8 14:49:09 2013 [909]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [909]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [909]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [909]PETSC ERROR: ------------------------------------------------------------------------ [909]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [719]PETSC ERROR: [527]PETSC ERROR: [907]PETSC ERROR: ------------------------------------------------------------------------ [907]PETSC ERROR: User provided function() line 0 in unknown directory unknown file --------------------- Error Message ------------------------------------ [718]PETSC ERROR: Signal received! [718]PETSC ERROR: ------------------------------------------------------------------------ [718]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [718]PETSC ERROR: See docs/changes/index.html for recent updates. [718]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [718]PETSC ERROR: See docs/index.html for manual pages. [718]PETSC ERROR: ------------------------------------------------------------------------ [718]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [718]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [718]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [718]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [718]PETSC ERROR: ------------------------------------------------------------------------ [718]PETSC ERROR: User provided function() line 0 in unknown directory unknown file configure using --with-debugging=yes, recompile, link, and run See docs/faq.html for hints about trouble shooting. [709]PETSC ERROR: See docs/index.html for manual pages. [709]PETSC ERROR: ------------------------------------------------------------------------ [709]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [709]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [709]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [709]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [709]PETSC ERROR: ------------------------------------------------------------------------ [709]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [332]PETSC ERROR: ------------------------------------------------------------------------ [332]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [332]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [332]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[332]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [332]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [332]PETSC ERROR: to get more information on the crash. [527]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [710]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [710]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [710]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [710]PETSC ERROR: ------------------------------------------------------------------------ [710]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [332]PETSC ERROR: --------------------- Error Message ------------------------------------ [332]PETSC ERROR: Signal received! [332]PETSC ERROR: ------------------------------------------------------------------------ [332]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [332]PETSC ERROR: See docs/changes/index.html for recent updates. [332]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [332]PETSC ERROR: See docs/index.html for manual pages. [332]PETSC ERROR: ------------------------------------------------------------------------ [332]PETSC ERROR: ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [332]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [332]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [332]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [332]PETSC ERROR: ------------------------------------------------------------------------ [332]PETSC ERROR: User provided function() line 0 in unknown directory unknown file to get more information on the crash. [714]PETSC ERROR: --------------------- Error Message ------------------------------------ [714]PETSC ERROR: Signal received! [714]PETSC ERROR: ------------------------------------------------------------------------ [714]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [714]PETSC ERROR: See docs/changes/index.html for recent updates. [714]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [714]PETSC ERROR: See docs/index.html for manual pages. [714]PETSC ERROR: ------------------------------------------------------------------------ [714]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [714]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [714]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [714]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [714]PETSC ERROR: ------------------------------------------------------------------------ [714]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [527]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [334]PETSC ERROR: --------------------- Error Message ------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------------------ [527]PETSC ERROR: [708]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [708]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [708]PETSC ERROR: to get more information on the crash. [334]PETSC ERROR: Signal received! [708]PETSC ERROR: --------------------- Error Message ------------------------------------ [708]PETSC ERROR: Signal received! [708]PETSC ERROR: ------------------------------------------------------------------------ [708]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [527]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [708]PETSC ERROR: See docs/changes/index.html for recent updates. [708]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [708]PETSC ERROR: See docs/index.html for manual pages. [708]PETSC ERROR: ------------------------------------------------------------------------ [708]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [708]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [708]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [708]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [708]PETSC ERROR: [334]PETSC ERROR: ------------------------------------------------------------------------ ------------------------------------------------------------------------ [708]PETSC ERROR: User provided function() line 0 in unknown directory unknown file Try option -start_in_debugger or -on_error_attach_debugger [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: See docs/changes/index.html for recent updates. Try option -start_in_debugger or -on_error_attach_debugger or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: See docs/faq.html for hints about trouble shooting. or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrindconfigure using --with-debugging=yes, recompile, link, and run [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: See docs/index.html for manual pages. or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors to get more information on the crash. [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: ------------------------------------------------------------------------ configure using --with-debugging=yes, recompile, link, and run --------------------- Error Message ------------------------------------ [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 to get more information on the crash. Signal received! [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib --------------------- Error Message ------------------------------------ ------------------------------------------------------------------------ [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 Signal received! Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 ------------------------------------------------------------------------ See docs/changes/index.html for recent updates. [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: ------------------------------------------------------------------------ Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 See docs/faq.html for hints about trouble shooting. [527]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: User provided function() line 0 in unknown directory unknown file See docs/changes/index.html for recent updates. See docs/index.html for manual pages. [719]PETSC ERROR: [334]PETSC ERROR: [522]PETSC ERROR: ------------------------------------------------------------------------ [522]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [522]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [522]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[522]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [522]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [522]PETSC ERROR: to get more information on the crash. [522]PETSC ERROR: --------------------- Error Message ------------------------------------ See docs/faq.html for hints about trouble shooting. ------------------------------------------------------------------------ [522]PETSC ERROR: Signal received! [522]PETSC ERROR: ------------------------------------------------------------------------ [522]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [522]PETSC ERROR: See docs/changes/index.html for recent updates. [522]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [522]PETSC ERROR: See docs/index.html for manual pages. [522]PETSC ERROR: ------------------------------------------------------------------------ [522]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 [522]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [522]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [522]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [522]PETSC ERROR: ------------------------------------------------------------------------ [522]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [719]PETSC ERROR: [334]PETSC ERROR: See docs/index.html for manual pages. ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [526]PETSC ERROR: ------------------------------------------------------------------------ [526]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [526]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [526]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[526]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [526]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [526]PETSC ERROR: to get more information on the crash. [526]PETSC ERROR: --------------------- Error Message ------------------------------------ [526]PETSC ERROR: Signal received! [526]PETSC ERROR: ------------------------------------------------------------------------ [526]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [526]PETSC ERROR: See docs/changes/index.html for recent updates. [526]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [526]PETSC ERROR: See docs/index.html for manual pages. [526]PETSC ERROR: ------------------------------------------------------------------------ [526]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 [526]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [526]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [526]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [526]PETSC ERROR: ------------------------------------------------------------------------ [526]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [719]PETSC ERROR: [334]PETSC ERROR: ------------------------------------------------------------------------ Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [521]PETSC ERROR: ------------------------------------------------------------------------ [521]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [521]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [521]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[521]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [719]PETSC ERROR: [334]PETSC ERROR: [521]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [521]PETSC ERROR: to get more information on the crash. [521]PETSC ERROR: --------------------- Error Message ------------------------------------ [521]PETSC ERROR: Signal received! [521]PETSC ERROR: ------------------------------------------------------------------------ [521]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [521]PETSC ERROR: See docs/changes/index.html for recent updates. [521]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [521]PETSC ERROR: See docs/index.html for manual pages. [521]PETSC ERROR: ------------------------------------------------------------------------ [521]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 [521]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [521]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [521]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 Configure run at Mon Sep 10 13:58:46 2012 Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [521]PETSC ERROR: ------------------------------------------------------------------------ [521]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [719]PETSC ERROR: [334]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [525]PETSC ERROR: [719]PETSC ERROR: [334]PETSC ERROR: ------------------------------------------------------------------------ Configure run at Mon Sep 10 13:58:46 2012 ------------------------------------------------------------------------ [525]PETSC ERROR: [717]PETSC ERROR: ------------------------------------------------------------------------ [717]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [717]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [717]PETSC ERROR: [334]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[717]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [717]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [717]PETSC ERROR: to get more information on the crash. User provided function() line 0 in unknown directory unknown file [525]PETSC ERROR: [717]PETSC ERROR: --------------------- Error Message ------------------------------------ [717]PETSC ERROR: Signal received! [717]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger ------------------------------------------------------------------------ [717]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [717]PETSC ERROR: See docs/changes/index.html for recent updates. [717]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [717]PETSC ERROR: See docs/index.html for manual pages. [717]PETSC ERROR: ------------------------------------------------------------------------ [717]PETSC ERROR: ./linearElasticity on a arch-linu named node1261 by fako9399 Tue Jan 8 14:49:09 2013 [717]PETSC ERROR: [333]PETSC ERROR: ------------------------------------------------------------------------ [333]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [333]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [333]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[333]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [333]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [333]PETSC ERROR: to get more information on the crash. [525]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [717]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [717]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [717]PETSC ERROR: ------------------------------------------------------------------------ [717]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [333]PETSC ERROR: --------------------- Error Message ------------------------------------ [333]PETSC ERROR: Signal received! [333]PETSC ERROR: ------------------------------------------------------------------------ [333]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [333]PETSC ERROR: See docs/changes/index.html for recent updates. [333]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [333]PETSC ERROR: See docs/index.html for manual pages. [333]PETSC ERROR: ------------------------------------------------------------------------ [333]PETSC ERROR: ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [333]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [333]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [333]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [333]PETSC ERROR: ------------------------------------------------------------------------ [333]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[719]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [525]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [719]PETSC ERROR: [335]PETSC ERROR: ------------------------------------------------------------------------ [335]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [335]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [335]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[335]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [335]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [335]PETSC ERROR: to get more information on the crash. [525]PETSC ERROR: ------------------------------------------------------------------------ [335]PETSC ERROR: --------------------- Error Message ------------------------------------ [335]PETSC ERROR: Signal received! [335]PETSC ERROR: ------------------------------------------------------------------------ [335]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [335]PETSC ERROR: See docs/changes/index.html for recent updates. [335]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [335]PETSC ERROR: See docs/index.html for manual pages. [335]PETSC ERROR: ------------------------------------------------------------------------ [335]PETSC ERROR: ./linearElasticity on a arch-linu named node1037 by fako9399 Tue Jan 8 14:49:09 2013 [335]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [335]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [335]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [335]PETSC ERROR: ------------------------------------------------------------------------ [335]PETSC ERROR: User provided function() line 0 in unknown directory unknown file configure using --with-debugging=yes, recompile, link, and run [719]PETSC ERROR: [525]PETSC ERROR: User provided function() line 0 in unknown directory unknown file to get more information on the crash. [525]PETSC ERROR: --------------------- Error Message ------------------------------------ [525]PETSC ERROR: Signal received! [525]PETSC ERROR: ------------------------------------------------------------------------ [525]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [525]PETSC ERROR: See docs/changes/index.html for recent updates. [525]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [525]PETSC ERROR: See docs/index.html for manual pages. [525]PETSC ERROR: ------------------------------------------------------------------------ [525]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 [525]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [525]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [525]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [525]PETSC ERROR: ------------------------------------------------------------------------ [525]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [523]PETSC ERROR: ------------------------------------------------------------------------ [523]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [523]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [523]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[523]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [523]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [523]PETSC ERROR: to get more information on the crash. [523]PETSC ERROR: --------------------- Error Message ------------------------------------ [523]PETSC ERROR: Signal received! [523]PETSC ERROR: ------------------------------------------------------------------------ [523]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [523]PETSC ERROR: See docs/changes/index.html for recent updates. [523]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [523]PETSC ERROR: See docs/index.html for manual pages. [523]PETSC ERROR: ------------------------------------------------------------------------ [523]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 [523]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [523]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [523]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [523]PETSC ERROR: ------------------------------------------------------------------------ [523]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [524]PETSC ERROR: ------------------------------------------------------------------------ [524]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [524]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [524]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[524]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [524]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [524]PETSC ERROR: to get more information on the crash. [524]PETSC ERROR: --------------------- Error Message ------------------------------------ [524]PETSC ERROR: Signal received! [524]PETSC ERROR: ------------------------------------------------------------------------ [524]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [524]PETSC ERROR: See docs/changes/index.html for recent updates. [524]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [524]PETSC ERROR: See docs/index.html for manual pages. [524]PETSC ERROR: ------------------------------------------------------------------------ [524]PETSC ERROR: ./linearElasticity on a arch-linu named node0943 by fako9399 Tue Jan 8 14:49:09 2013 [524]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [524]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [524]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [524]PETSC ERROR: ------------------------------------------------------------------------ [524]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [11]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [11]PETSC ERROR: to get more information on the crash. [11]PETSC ERROR: --------------------- Error Message ------------------------------------ [11]PETSC ERROR: Signal received! [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [11]PETSC ERROR: See docs/changes/index.html for recent updates. [11]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [11]PETSC ERROR: See docs/index.html for manual pages. [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [11]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [11]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [11]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [8]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [8]PETSC ERROR: to get more information on the crash. [8]PETSC ERROR: --------------------- Error Message ------------------------------------ [8]PETSC ERROR: Signal received! [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [8]PETSC ERROR: See docs/changes/index.html for recent updates. [8]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [8]PETSC ERROR: See docs/index.html for manual pages. [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [8]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [8]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [8]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [10]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[10]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [10]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [10]PETSC ERROR: to get more information on the crash. [10]PETSC ERROR: --------------------- Error Message ------------------------------------ [10]PETSC ERROR: Signal received! [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [10]PETSC ERROR: See docs/changes/index.html for recent updates. [10]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [10]PETSC ERROR: See docs/index.html for manual pages. [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [10]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [10]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [10]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [node1569:15249] 6 more processes have sent help message help-mpi-btl-openib.txt / pp retry exceeded [node1569:15249] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages [node1569:15249] 33 more processes have sent help message help-mpi-api.txt / mpi-abort [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [7]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [7]PETSC ERROR: to get more information on the crash. [7]PETSC ERROR: --------------------- Error Message ------------------------------------ [7]PETSC ERROR: Signal received! [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [7]PETSC ERROR: See docs/changes/index.html for recent updates. [7]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [7]PETSC ERROR: See docs/index.html for manual pages. [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [7]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [7]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [7]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [0]PETSC ERROR: to get more information on the crash. [0]PETSC ERROR: --------------------- Error Message ------------------------------------ [0]PETSC ERROR: Signal received! [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [0]PETSC ERROR: See docs/changes/index.html for recent updates. [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [0]PETSC ERROR: See docs/index.html for manual pages. [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [0]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [0]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [9]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [9]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [9]PETSC ERROR: to get more information on the crash. [9]PETSC ERROR: --------------------- Error Message ------------------------------------ [9]PETSC ERROR: Signal received! [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [9]PETSC ERROR: See docs/changes/index.html for recent updates. [9]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [9]PETSC ERROR: See docs/index.html for manual pages. [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [9]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [9]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [9]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [5]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [5]PETSC ERROR: to get more information on the crash. [5]PETSC ERROR: --------------------- Error Message ------------------------------------ [5]PETSC ERROR: Signal received! [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [5]PETSC ERROR: See docs/changes/index.html for recent updates. [5]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [5]PETSC ERROR: See docs/index.html for manual pages. [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [5]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [5]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [5]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: User provided function() line 0 in unknown directory unknown file [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: Caught signal number 15 Terminate: Somet process (or the batch system) has told this process to end [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [6]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run [6]PETSC ERROR: to get more information on the crash. [6]PETSC ERROR: --------------------- Error Message ------------------------------------ [6]PETSC ERROR: Signal received! [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: Petsc Release Version 3.3.0, Patch 3, Wed Aug 29 11:26:24 CDT 2012 [6]PETSC ERROR: See docs/changes/index.html for recent updates. [6]PETSC ERROR: See docs/faq.html for hints about trouble shooting. [6]PETSC ERROR: See docs/index.html for manual pages. [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: ./linearElasticity on a arch-linu named node1569 by fako9399 Tue Jan 8 14:49:09 2013 [6]PETSC ERROR: Libraries linked from /projects/fako9399/petsc-3.3-p3/arch-linux264-cxx-opt/lib [6]PETSC ERROR: Configure run at Mon Sep 10 13:58:46 2012 [6]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=32 --known-level1-dcache-assoc=0 --known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --with-clanguage=cxx --with-shared-libraries=1 --with-dynamic-loading=1 --download-f-blas-lapack=1 --with-batch=1 --known-mpi-shared-libraries=0 --with-mpi-shared=1 --download-parmetis=1 --download-metis=1 --with-64-bit-indices=1 --with-netcdf-dir=/projects/fako9399/petsc-3.3-p3/externalpackage/netcdf-4.1.3install --download-exodusii=1 --with-debugging=no --download-ptscotch=1 [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: User provided function() line 0 in unknown directory unknown file mpirun: abort is already in progress...hit ctrl-c again to forcibly terminate 29 total processes killed (some possibly by mpirun during cleanup)