Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Sun Sep 23 13:55:06 2012 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc=0 --download-f2cblaslapack --useThreads=0 Working directory: /home/Yifei Li/petsc-3.3-p3 Machine platform: ('CYGWIN_NT-5.1', 'cgwinxp', '1.7.16(0.262/5/3)', '2012-07-20 22:55', 'i686', '') Python version: 2.6.8 (unknown, Jun 9 2012, 11:30:32) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/gdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/gdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/gdb...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/gdb...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/gdb...not found Checking for program /cygdrive/c/WINDOWS/gdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/gdb...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/gdb...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/gdb...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/gdb...not found Checking for program /home/Yifei Li/gdb...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/dbx...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/dbx...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/dbx...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/dbx...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/dbx...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/dbx...not found Checking for program /home/Yifei Li/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/xdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/xdb...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/xdb...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/xdb...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/xdb...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/xdb...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/xdb...not found Checking for program /home/Yifei Li/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/system32/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/dsymutil...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/dsymutil...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/dsymutil...not found Checking for program /home/Yifei Li/dsymutil...not found Defined make macro "DSYMUTIL" to "true" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/languages.py:45) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:45) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/languages.py:51) TESTING: configureLanguageSupport from PETSc.utilities.languages(config/PETSc/utilities/languages.py:51) Check c-support c++-support and other misc tests Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/languages.py:68) TESTING: configureExternC from PETSc.utilities.languages(config/PETSc/utilities/languages.py:68) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/languages.py:74) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:74) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMake from config.programs(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/programs.py:24) TESTING: configureMake from config.programs(config/BuildSystem/config/programs.py:24) Check various things about make Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/strings...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/strings...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/strings...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/strings...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/strings...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/strings...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/strings...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/strings...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/strings...not found Checking for program /cygdrive/c/WINDOWS/system32/strings...not found Checking for program /cygdrive/c/WINDOWS/strings...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/strings...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/strings...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/strings...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/strings...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/strings...not found Checking for program /home/Yifei Li/strings...not found sh: /usr/bin/make -v dummy-foobar Executing: /usr/bin/make -v dummy-foobar sh: GNU Make 3.82.90 Built for i686-pc-cygwin Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} module multiprocessing found 4 cores: using make_np = 5 Defined make macro "MAKE_NP" to "5" ================================================================================ TEST configureMkdir from config.programs(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/programs.py:109) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:109) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/programs.py:131) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:131) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-mdoUL7 All intermediate test results are stored in /tmp/petsc-mdoUL7/config.programs sh: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-mdoUL7/config.programs/sed1" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-mdoUL7/config.programs/sed1" sh: Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/tmp/petsc-mdoUL7/config.programs/diff1" "/tmp/petsc-mdoUL7/config.programs/diff2" Executing: "/usr/bin/diff" -w "/tmp/petsc-mdoUL7/config.programs/diff1" "/tmp/petsc-mdoUL7/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/Yifei Li/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMercurial from config.sourceControl(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/sourceControl.py:23) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:23) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 1.9.3) ================================================================================ TEST configureCVS from config.sourceControl(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/sourceControl.py:34) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:34) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" sh: cvs --version Executing: cvs --version sh: Concurrent Versions System (CVS) 1.12.13 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/sourceControl.py:43) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:43) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/svn...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/svn...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/svn...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/svn...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/svn...not found Checking for program /cygdrive/c/WINDOWS/system32/svn...not found Checking for program /cygdrive/c/WINDOWS/svn...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/svn...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/svn...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/svn...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/svn...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/svn...not found Checking for program /home/Yifei Li/svn...not found ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 3 #define PETSC_VERSION_DATE "Jun, 5, 2012" #define PETSC_VERSION_PATCH_DATE "Wed Aug 29 11:26:24 CDT 2012" #define PETSC_VERSION_HG "7008a292ab6296661baba1a0d33a2d0504a4aa95" #define PETSC_VERSION_DATE_HG "Wed Aug 29 11:25:51 2012 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/Yifei Li/petsc-3.3-p3" Defined "DIR" to ""/home/Yifei Li/petsc-3.3-p3"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/petscdir.py:75) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:75) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/petscdir.py:82) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:82) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/Yifei Li/petsc-3.3-p3/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py:1472) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py:1453) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1453) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST checkVendor from config.setCompilers(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py:379) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:379) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py:389) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:389) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py:505) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:505) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v3.5/win32fe...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework/v2.0.50727/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft Visual Studio 9.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/NVIDIA GPU Computing Toolkit/CUDA/v4.2/libnvvp/win32fe...not found Checking for program /cygdrive/c/WINDOWS/system32/win32fe...not found Checking for program /cygdrive/c/WINDOWS/win32fe...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Program Files/Microsoft SQL Server/90/Tools/binn/win32fe...not found Checking for program /cygdrive/c/Program Files/QuickTime/QTSystem/win32fe...not found Checking for program /cygdrive/c/Program Files/CMake 2.8/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/CGAL-4.0.2/auxiliary/gmp/lib/win32fe...not found Checking for program /home/Yifei Li/win32fe...not found Checking for program /home/Yifei Li/petsc-3.3-p3/bin/win32fe/win32fe...found Defined make macro "CC" to "/home/Yifei Li/petsc-3.3-p3/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-mdoUL7/config.setCompilers sh: /home/Yifei Li/petsc-3.3-p3/bin/win32fe/win32fe cl -c -o /tmp/petsc-mdoUL7/config.setCompilers/conftest.o -I/tmp/petsc-mdoUL7/config.setCompilers /tmp/petsc-mdoUL7/config.setCompilers/conftest.c Executing: /home/Yifei Li/petsc-3.3-p3/bin/win32fe/win32fe cl -c -o /tmp/petsc-mdoUL7/config.setCompilers/conftest.o -I/tmp/petsc-mdoUL7/config.setCompilers /tmp/petsc-mdoUL7/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: ret = 32512 error message = {/bin/sh: /home/Yifei: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with /home/Yifei Li/petsc-3.3-p3/bin/win32fe/win32fe cl. Deleting "CC" **** Configure header conftest.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef PETSC_DIR #define PETSC_DIR "/home/Yifei Li/petsc-3.3-p3" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_EXTERN_CXX #define PETSC_USE_EXTERN_CXX #endif #endif **** C specific Configure header conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- C compiler you provided with -with-cc=win32fe cl does not work ******************************************************************************* File "./config/configure.py", line 311, in petsc_configure framework.configure(out = sys.stdout) File "/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/framework.py", line 933, in configure child.configure() File "/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py", line 1487, in configure self.executeTest(self.checkCCompiler) File "/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py", line 509, in checkCCompiler for compiler in self.generateCCompilerGuesses(): File "/home/Yifei Li/petsc-3.3-p3/config/BuildSystem/config/setCompilers.py", line 442, in generateCCompilerGuesses raise RuntimeError('C compiler you provided with -with-cc='+self.framework.argDB['with-cc']+' does not work')