Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Fri Aug 10 16:45:18 2012 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc=0 --download-f2cblaslapack --useThreads=0 Working directory: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2 Machine platform: ('CYGWIN_NT-6.1-WOW64', 'pcpinna', '1.7.16(0.262/5/3)', '2012-07-20 22:55', 'i686', '') Python version: 2.6.8 (unknown, Jun 9 2012, 11:30:32) [GCC 4.5.3] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/framework.py:821) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:821) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/bin/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/Microsoft .NET Framework 3.5 (Pre-Release Version)/dbx...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v2.0.50727/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/PlatformSDK/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Python26/dbx...not found Checking for program /cygdrive/c/Python26/Scripts/dbx...not found Checking for program /usr/lib/lapack/dbx...not found Checking for program /home/Fabio/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/bin/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/Microsoft .NET Framework 3.5 (Pre-Release Version)/xdb...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v2.0.50727/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/PlatformSDK/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Python26/xdb...not found Checking for program /cygdrive/c/Python26/Scripts/xdb...not found Checking for program /usr/lib/lapack/xdb...not found Checking for program /home/Fabio/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/BIN/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/bin/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/Microsoft .NET Framework 3.5 (Pre-Release Version)/dsymutil...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v2.0.50727/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/VCPackages/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/PlatformSDK/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/dsymutil...not found Checking for program /cygdrive/c/Python26/dsymutil...not found Checking for program /cygdrive/c/Python26/Scripts/dsymutil...not found Checking for program /usr/lib/lapack/dsymutil...not found Checking for program /home/Fabio/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/languages.py:45) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:45) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/languages.py:51) TESTING: configureLanguageSupport from PETSc.utilities.languages(config/PETSc/utilities/languages.py:51) Check c-support c++-support and other misc tests Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/languages.py:68) TESTING: configureExternC from PETSc.utilities.languages(config/PETSc/utilities/languages.py:68) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/languages.py:74) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:74) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMake from config.programs(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/programs.py:24) TESTING: configureMake from config.programs(config/BuildSystem/config/programs.py:24) Check various things about make Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...found Defined make macro "STRINGS" to "/usr/bin/strings" sh: /usr/bin/strings /usr/bin/make Executing: /usr/bin/strings /usr/bin/make sh: $xqB [^_] [^_] 3S$3C [^_] ,[^_] <-tL<@t<<+uI ,[^_] ue;} <@u. [^_] [^] r.v(1 [^_] [^_] L[^_] [^_] [^_] [^_] t+;5 [^_] [^_] <[^_] $/*B $L*B <[^_] [^_] [^_] $T+B $T+B $T+B $4+B ,[^_] [^_] ,[^_] $l,B S$;V$ [^_] $4,B $l-B $H-B [^_] <[^_] ,[^_] <[^_] $T.B $G.B $`/B $e0B $z0B $|1B $(/B @[^] $P0B $80B $`1B $<1B <[^_] 2[^_] 2^_] 2^_] 2[^_] 2^_] 2^_] ,[^_] ;] [^_] [^_] t6;} [^_] \[^_] [^_] $,7B $h6B $@6B $@6B WVSP $\7B [^_] $08B $T8B $|8B $U9B [^] $h9B [^_] [^_] <\t__B 8.t. $m`B $V`B $+5P $(`B [^_] [^_] $$aB $HaB $5^B [^_] L[^_ $2aB L[^_] $5^B WVSP [^_] [^_] [^_] BN@t [^] [^_] ;-tc $4bB $,bB $DbB S$tL @N@u [^_] [^_] $$cB $tcB [^_] $CgB $DcB $lB ,[^_] $RlB t.<$u $ZlB ,[^_] [^_] [^_] [^_] [^_] t.;5 WVS1 8.t( [^_] [^_] tj=t ,[^_] ,[^_] $(){}$`^~! cyggcc_s-1.dll __register_frame_info cyggcj-11.dll _Jv_RegisterClasses __deregister_frame_info attempt to use unsupported feature: `%s' touch: Archive `%s' does not exist touch: `%s' is not a valid archive touch: touch: Member `%s' does not exist in `%s' touch: Bad return code from ar_member_touch on `%s' ! ARFILENAMES/ *** [%s] Archive member `%s' may be bogus; not deleted *** Archive member `%s' may be bogus; not deleted *** [%s] Deleting file `%s' *** Deleting file `%s' unlink: .SUFFIXES Recipe has too many lines (%ud) $(MAKE) ${MAKE} kill # recipe to execute (built-in): (from `%s', line %lu): %c%.*s .SUFFIXES SUFFIXES ARFLAGS OBJC CHECKOUT,v +$(if $(wildcard $@),,$(CO) $(COFLAGS) $< $@) COFLAGS $(CC) -E $(FC) F77FLAGS $(FFLAGS) LINT lint YACC yacc MAKEINFO makeinfo TEXI2DVI texi2dvi WEAVE weave CWEAVE cweave TANGLE tangle CTANGLE ctangle rm -f LINK.o $(CC) $(LDFLAGS) $(TARGET_ARCH) COMPILE.c $(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.c $(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.m $(OBJC) $(OBJCFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c COMPILE.C $(COMPILE.cc) COMPILE.cpp LINK.cc $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.C $(LINK.cc) LINK.cpp YACC.y $(YACC) $(YFLAGS) LEX.l $(LEX) $(LFLAGS) -t YACC.m LEX.m COMPILE.f $(FC) $(FFLAGS) $(TARGET_ARCH) -c LINK.f $(FC) $(FFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.F $(FC) $(FFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -c LINK.r $(FC) $(FFLAGS) $(RFLAGS) $(LDFLAGS) $(TARGET_ARCH) COMPILE.def $(M2C) $(M2FLAGS) $(DEFFLAGS) $(TARGET_ARCH) COMPILE.mod $(M2C) $(M2FLAGS) $(MODFLAGS) $(TARGET_ARCH) COMPILE.p $(PC) $(PFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c LINK.p $(PC) $(PFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_ARCH) LINK.s $(CC) $(ASFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.s $(AS) $(ASFLAGS) $(TARGET_MACH) LINK.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(LDFLAGS) $(TARGET_MACH) COMPILE.S $(CC) $(ASFLAGS) $(CPPFLAGS) $(TARGET_MACH) -c PREPROCESS.S $(CC) -E $(CPPFLAGS) PREPROCESS.F $(FC) $(FFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -F PREPROCESS.r $(FC) $(FFLAGS) $(RFLAGS) $(TARGET_ARCH) -F LINT.c $(LINT) $(LINTFLAGS) $(CPPFLAGS) $(TARGET_ARCH) OUTPUT_OPTION -o $@ .LIBPATTERNS lib%.so lib%.a $(AR) $(ARFLAGS) $@ $< %.out @rm -f $@ cp $< $@ %.w %.ch $(CTANGLE) $^ $@ %.tex $(CWEAVE) $^ $@ $(CHECKOUT,v) RCS/%,v RCS/% $(GET) $(GFLAGS) $(SCCS_OUTPUT_OPTION) $< SCCS/s.% $(LINK.o) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.s) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.S) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.c) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.cc) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.C) $^ $(LOADLIBES) $(LDLIBS) -o $@ .cpp $(LINK.cpp) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.f) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.m) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.p) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.F) $^ $(LOADLIBES) $(LDLIBS) -o $@ $(LINK.r) $^ $(LOADLIBES) $(LDLIBS) -o $@ .mod $(COMPILE.mod) -o $@ -e $@ $^ .def.sym $(COMPILE.def) -o $@ $< cat $< >$@ chmod a+x $@ .s.o $(COMPILE.s) -o $@ $< .S.o $(COMPILE.S) -o $@ $< .c.o $(COMPILE.c) $(OUTPUT_OPTION) $< .cc.o $(COMPILE.cc) $(OUTPUT_OPTION) $< .C.o $(COMPILE.C) $(OUTPUT_OPTION) $< .cpp.o $(COMPILE.cpp) $(OUTPUT_OPTION) $< .f.o $(COMPILE.f) $(OUTPUT_OPTION) $< .m.o $(COMPILE.m) $(OUTPUT_OPTION) $< .p.o $(COMPILE.p) $(OUTPUT_OPTION) $< .F.o $(COMPILE.F) $(OUTPUT_OPTION) $< .r.o $(COMPILE.r) $(OUTPUT_OPTION) $< .mod.o $(COMPILE.mod) -o $@ $< .c.ln $(LINT.c) -C$* $< .y.ln $(YACC.y) $< $(LINT.c) -C$* y.tab.c $(RM) y.tab.c .l.ln @$(RM) $*.c $(LEX.l) $< > $*.c $(LINT.c) -i $*.c -o $@ $(RM) $*.c .y.c $(YACC.y) $< mv -f y.tab.c $@ .l.c @$(RM) $@ $(LEX.l) $< > $@ .ym.m $(YACC.m) $< mv -f y.tab.c $@ .lm.m @$(RM) $@ $(LEX.m) $< > $@ .F.f $(PREPROCESS.F) $(OUTPUT_OPTION) $< .r.f $(PREPROCESS.r) $(OUTPUT_OPTION) $< .l.r $(LEX.l) $< > $@ mv -f lex.yy.r $@ .S.s $(PREPROCESS.S) $< > $@ .texinfo.info $(MAKEINFO) $(MAKEINFO_FLAGS) $< -o $@ .texi.info .txinfo.info .tex.dvi $(TEX) $< .texinfo.dvi $(TEXI2DVI) $(TEXI2DVI_FLAGS) $< .texi.dvi .txinfo.dvi .w.c $(CTANGLE) $< - $@ .web.p $(TANGLE) $< .w.tex $(CWEAVE) $< - $@ .web.tex $(WEAVE) $< INTERNAL: readdir: %s # Directories # %s: could not be stat'd. # %s (device %ld, inode %ld): could not be opened. # %s (device %ld, inode %ld): files, impossibilities so far. impossibilities in %lu directories. Recursive variable `%s' references itself (eventually) unterminated variable reference warning: undefined variable `%.*s' name %s: Field '%s' not cached: %s hname vpath stem *name != '\0' /netrel/src/make-3.82.90-1/file.c strcache_iscached (name) Recipe was specified for file `%s' at %s:%lu, Recipe for file `%s' was found by implicit rule search, but `%s' is now considered the same file as `%s'. Recipe for `%s' will be ignored in favor of the one for `%s'. can't rename single-colon `%s' to double-colon `%s' can't rename double-colon `%s' to single-colon `%s' *** Deleting intermediate file `%s' Removing intermediate files... unlink: .SUFFIXES .PRECIOUS .LOW_RESOLUTION_TIME .PHONY .INTERMEDIATE .SECONDARY .EXPORT_ALL_VARIABLES .IGNORE .SILENT .NOTPARALLEL %04d-%02d-%02d %02d:%02d:%02d .%09d Current time %s: Timestamp out of range; substituting %s | %s .RECIPEPREFIX = # Not a target: %s:%s # Precious file (prerequisite of .PRECIOUS). # Phony target (prerequisite of .PHONY). # Command line target. # A default, MAKEFILES, or -include/sinclude makefile. # Implicit rule search has been done. # Implicit rule search has not been done. # Implicit/static pattern stem: `%s' # File is an intermediate prerequisite. # Also makes: # Modification time never checked. # File does not exist. # File is very old. # Last modified %s # File has been updated. # File has not been updated. # Recipe currently running (THIS IS A BUG). # Dependencies recipe running (THIS IS A BUG). # Successfully updated. question_flag # Needs to be updated (-q is set). # Failed to be updated. # Invalid value in `update_status' member! # Files # files hash-table stats: print_file enter_file lookup_file undefined recursive simple Internal error: func_error: '%s' insufficient number of arguments (%d) to function `%s' unimplemented on this platform: function `%s' warning: undefined variable `%.*s' default environment file environment override command line override automatic suffix basename addprefix filter %s: '%s' non-numeric first argument to `wordlist' function non-numeric second argument to `wordlist' function invalid first argument to `wordlist' function: `%d' non-numeric first argument to `word' function first argument to `word' function must be greater than 0 %s:%lu: pipe fork Cleaning up temporary batch file %s unterminated call to function `%s': missing `%c' abspath addsuffix notdir subst filter-out findstring firstword flavor join lastword patsubst realpath shell sort strip wildcard word wordlist words origin foreach call info error warning value eval POSIXLY_CORRECT %s: option `%s' is ambiguous %s: option `--%s' doesn't allow an argument %s: option `%c%s' doesn't allow an argument %s: option `%s' requires an argument %s: unrecognized option `--%s' %s: unrecognized option `%c%s' %s: illegal option -- %c %s: invalid option -- %c %s: option requires an argument -- %c %s: option `-W %s' is ambiguous %s: option `-W %s' doesn't allow an argument Avoiding implicit rule recursion. Trying pattern rule with stem `%.*s'. Rejecting impossible rule prerequisite `%s'. Rejecting impossible implicit prerequisite `%s'. Trying rule prerequisite `%s'. Trying implicit prerequisite `%s'. Found prerequisite `%s' as VPATH `%s' Looking for a rule with intermediate file `%s'. Looking for an implicit rule for `%s'. Looking for archive-member implicit rule for `%s'. INTERNAL: Freeing child %p (%s) but no tokens left! write jobserver Released token for child %p (%s). *** (core dumped) (ignored) %s:%lu %s: recipe for target `%s' failed %s[%s] Error %d%s %s[%s] %s%s%s bash rksh dash ap <= end /netrel/src/make-3.82.90-1/job.c %s (line %d) Bad shell context (!unixy && !batch_mode_shell) %s: Command not found SHELL %s: Shell program not found execvp: $(SHELL) $(.SHELLFLAGS) $(IFS) vfork cannot enforce load limits on this operating system cannot enforce load limit: getloadavg Estimated system load = %f (actual = %f) (max requested = %f) (remote) Putting child %p (%s) PID %s%s on the chain. f->command_state == cs_finished *** Waiting for unfinished jobs.... Live child %p (%s) PID %s %s remote_status wait Reaping losing child %p PID %s %s Reaping winning child %p PID %s %s Cleaning up temp batch file %s .DELETE_ON_ERROR Removing child %p PID %s%s from chain. don't Need a job token; we %shave children Duplicate the job FD INTERNAL: no children as we go to sleep on read Obtained token for child %p (%s). read jobs pipe Read returned EBADF. %s: target `%s' does not exist %s: update target `%s' due to: %s construct_command_argv_internal break case continue eval exec exit export login logout read readonly shift switch test times trap ulimit umask unset while start_waiting_job %sGNU Make %s %sBuilt for %s %sBuilt for %s (%s) %sCopyright (C) 2010 Free Software Foundation, Inc. %sLicense GPLv3+: GNU GPL version 3 or later %sThis is free software: you are free to change and redistribute it. %sThere is NO WARRANTY, to the extent permitted by law. # Make data base, printed on %s # Finished Make data base on %s INTERNAL: Exiting with %u jobserver tokens (should be 0)! write INTERNAL: Exiting with %u jobserver tokens available; should be %u! empty string invalid as file name MAKECMDGOALS MFLAGS MAKEFLAGS %s: Entering an unknown directory %s: Leaving an unknown directory %s: Entering directory `%s' %s: Leaving directory `%s' %s[%u]: Entering an unknown directory %s[%u]: Leaving an unknown directory %s[%u]: Entering directory `%s' %s[%u]: Leaving directory `%s' the `%s%s' option requires a non-empty string argument the `-%c' option requires a positive integral argument Usage: %s [options] [target] ... This program built for %s This program built for %s (%s) Report bugs to /tmp /usr/share/locale make getcwd .VARIABLES .RECIPEPREFIX .SHELLFLAGS target-specific order-only second-expansion else-if shortest-stem undefine oneshell archives jobserver check-symlink .FEATURES SHELL MAKE_RESTARTS unknown debug level specification `%s' MAKE_COMMAND $(MAKE_COMMAND) MAKE -*-command-variables-*- ${-*-command-variables-*-} MAKEOVERRIDES MAKELEVEL CURDIR Makefile from standard input specified twice. TMPDIR fopen (temporary file) fwrite (temporary file) .DEFAULT .DEFAULT_GOAL -*-eval-flags-*- internal error: multiple --jobserver-fds options %d,%d internal error: invalid --jobserver-fds string `%s' Jobserver client (fds %d,%d) warning: -jN forced in submake: disabling jobserver mode. dup jobserver warning: jobserver unavailable: using -j1. Add `+' to parent make rule. creating jobs pipe init jobserver pipe Updating makefiles.... Makefile `%s' might loop; not remaking it. Failed to remake makefile `%s'. Included makefile `%s' was not found. Makefile `%s' was not found chdir Couldn't change back to original directory. MAKEFLAGS=%s Re-executing[%u]: %s=%u MAKE_RESTARTS= MAKE_RESTARTS=%u BOGUS_UPDATE_STATUS /netrel/src/make-3.82.90-1/main.c unlink (temporary file): .DEFAULT_GOAL contains more than one target No targets specified and no makefile found No targets Updating goal targets.... warning: Clock skew detected. Your build may be incomplete. main always-make directory basic debug environment-overrides file help ignore-errors include-dir jobs jobserver-fds keep-going load-average check-symlink-times just-print old-file print-data-base question no-builtin-rules no-builtin-variables silent no-keep-going touch trace version print-directory no-print-directory what-if warn-undefined-variables eval quiet stop new-file assume-new assume-old max-load dry-run recon makefile Options: -b, -m Ignored for compatibility. -B, --always-make Unconditionally make all targets. -C DIRECTORY, --directory=DIRECTORY Change to DIRECTORY before doing anything. -d Print lots of debugging information. --debug[=FLAGS] Print various types of debugging information. -e, --environment-overrides Environment variables override makefiles. --eval=STRING Evaluate STRING as a makefile statement. -f FILE, --file=FILE, --makefile=FILE Read FILE as a makefile. -h, --help Print this message and exit. -i, --ignore-errors Ignore errors from recipes. -I DIRECTORY, --include-dir=DIRECTORY Search DIRECTORY for included makefiles. -j [N], --jobs[=N] Allow N jobs at once; infinite jobs with no arg. -k, --keep-going Keep going when some targets can't be made. -l [N], --load-average[=N], --max-load[=N] Don't start multiple jobs unless load is below N. -L, --check-symlink-times Use the latest mtime between symlinks and target. -n, --just-print, --dry-run, --recon Don't actually run any recipe; just print them. -o FILE, --old-file=FILE, --assume-old=FILE Consider FILE to be very old and don't remake it. -p, --print-data-base Print make's internal database. -q, --question Run no recipe; exit status says if up to date. -r, --no-builtin-rules Disable the built-in implicit rules. -R, --no-builtin-variables Disable the built-in variable settings. -s, --silent, --quiet Don't echo recipes. -S, --no-keep-going, --stop Turns off -k. -t, --touch Touch targets instead of remaking them. --trace Print tracing information. -v, --version Print the version number of make and exit. -w, --print-directory Print the current directory. --no-print-directory Turn off -w, even if it was turned on implicitly. -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE Consider FILE to be infinitely new. --warn-undefined-variables Warn when an undefined variable is referenced. %s: %s[%u]: %s:%lu: %s:%lu: *** %s: *** %s[%u]: *** . Stop. %s%s: %s %s: %s virtual memory exhausted write error: %s write error ifdef ifndef ifeq ifneq else endif Extraneous text after `%s' directive extraneous `%s' only one `else' per conditional warning: NUL character seen; rest of line ignored export override private define undefine prerequisites cannot be defined in recipes mixed implicit and static pattern rules mixed implicit and normal rules .POSIX .SHELLFLAGS .SECONDEXPANSION .ONESHELL target `%s' doesn't match the target pattern target file `%s' has both : and :: entries target `%s' given more than once in the same rule. warning: overriding recipe for target `%s' warning: ignoring old recipe for target `%s' $(HOME) HOME .INCLUDE_DIRS virtual memory exhausted empty variable name extraneous text after `define' directive missing `endef', unterminated `define' endef extraneous text after `endef' directive v != NULL /netrel/src/make-3.82.90-1/read.c invalid syntax in conditional unexport vpath include -include sinclude %s: %s recipe commences before first target missing rule before recipe (did you mean TAB instead of 8 spaces?) missing separator%s *p2 != '\0' v != 0 Malformed target-specific variable definition missing target pattern multiple target patterns target pattern contains no `%%' .DEFAULT_GOAL missing `endif' Reading makefile `%s' (no default goal) (search path) (don't care) (no ~ expansion) MAKEFILE_LIST Reading makefiles... $(MAKEFILES) /usr/include /usr/gnu/include /usr/local/include eval record_target_var GNUmakefile makefile Makefile stat: lstat: readlink: %sNo rule to make target `%s'%s %sNo rule to make target `%s', needed by `%s'%s *** $(.LIBPATTERNS) .LIBPATTERNS element `%s' is not a pattern %s/%s %.2g Warning: File `%s' has modification time %s s in the future touch %s touch: open: touch: fstat: touch: read: touch: lseek: touch: write: Pruning file `%s'. Considering target file `%s'. Recently tried and failed to update file `%s'. File `%s' was considered already. Still updating file `%s'. Finished updating file `%s'. File `%s' does not exist. *** Warning: .LOW_RESOLUTION_TIME file `%s' has a high resolution time stamp Found an implicit rule for `%s'. No implicit rule found for `%s'. Using default recipe for `%s'. Circular %s <- %s dependency dropped. Finished prerequisites of target file `%s'. The prerequisites of `%s' are being made. Giving up on target file `%s'. Target `%s' not remade because of errors. Prerequisite `%s' is order-only for target `%s'. Prerequisite `%s' of target `%s' does not exist. Prerequisite `%s' is newer than target `%s'. Prerequisite `%s' is older than target `%s'. Target `%s' is double-colon and has no prerequisites. No recipe for `%s' and no prerequisites actually changed. Making `%s' due to always-make flag. No need to remake target `%s' ; using VPATH name `%s' Must remake target `%s'. Ignoring VPATH name `%s'. Recipe of `%s' is being run. Failed to remake target file `%s'. Successfully remade target file `%s'. Target file `%s' needs remade under -q. file->update_status >= 0 && file->update_status <= 2 /netrel/src/make-3.82.90-1/remake.c Using default commands for `%s'. Nothing to be done for `%s'. `%s' is up to date. /lib /usr/lib update_file_1 _(knN r->suffixes[0] != NULL /netrel/src/make-3.82.90-1/rule.c r->suffixes[i] != NULL (%.o) # Implicit Rules # No implicit rules. # %u implicit rules, %u (%.1f%%) terminal. BUG: num_pattern_rules is wrong! %u != %u create_pattern_rule install_pattern_rule %s No strcache buffers total_buffers == numbuffs + 1 /netrel/src/make-3.82.90-1/strcache.c %s strcache buffers: %lu (%lu) / strings = %lu / storage = %lu B / avg = %lu B %s current buf: size = %hu B / used = %hu B / count = %hu / avg = %hu B %s other used: total = %lu B / count = %lu / avg = %lu B %s other free: total = %lu B / max = %lu B / min = %lu B / avg = %hu B %s strcache performance: lookups = %lu / hit rate = %lu%% # hash-table stats: strcache_print_stats automatic default environment makefile environment under -e command line `override' directive private (from `%s', line %lu) define %s endef %s %s= $(subst ,,%s) .RECIPEPREFIX .VARIABLES current_variable_set_list->next != NULL /netrel/src/make-3.82.90-1/variable.c MAKELEVEL %s%s%s MAKE_VERSION SHELL MAKEFILES $(patsubst %/,%,$(dir $@)) $(patsubst %/,%,$(dir $%)) $(patsubst %/,%,$(dir $*)) $(patsubst %/,%,$(dir $<)) $(patsubst %/,%,$(dir $?)) $(patsubst %/,%,$(dir $^)) $(patsubst %/,%,$(dir $+)) $(notdir $@) $(notdir $%) $(notdir $*) $(notdir $<) $(notdir $?) $(notdir $^) $(notdir $+) %s=%u empty variable name # variable set hash-table stats: # Variables # Pattern-specific Variable Values %s : # %u pattern-specific variable values # No pattern-specific variable values. pop_variable_scope 3.82.90 i686-pc-cygwin $(strip $(VPATH)) $(strip $(GPATH)) # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: can't allocate %lu bytes for hash table: memory exhausted Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% BPOSIXLY_CORRECT alnum alpha blank cntrl digit graph lower print punct space upper xdigit next != NULL /netrel/src/make-3.82.90-1/glob/glob.c HOME glob GetModuleHandleA GetProcAddress __assert_func __ctype_ptr__ __errno __getreent __main _dll_crt0@0 _exit _fcntl64 _fdopen64 _fopen64 _fstat64 _impure_ptr _lseek64 _lstat64 _open64 _stat64 abort alarm atexit atof atoi atol calloc chdir clock_gettime close closedir ctime cygwin_detach_dll cygwin_internal dll_dllcrt0 dup2 execvp exit fclose fflush fgets fileno fork fprintf fputs fread free fwrite getcwd getenv getlogin getpid getpwnam getrlimit kill localtime malloc memcpy memmove memset mkstemp opendir pipe printf putc putenv puts qsort read readdir readlink realloc realpath remove setlocale setrlimit setvbuf sigaction sigaddset sigemptyset signal sigprocmask sprintf sscanf strchr strcmp strcpy strdup strerror strlen strncmp strncpy strndup strpbrk strrchr strsignal strstr time tolower unlink vfork vfprintf wait waitpid write libintl_bindtextdomain libintl_gettext libintl_textdomain KERNEL32.dll cygwin1.dll cygintl-8.dll Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} module multiprocessing found 2 cores: using make_np = 3 Defined make macro "MAKE_NP" to "3" ================================================================================ TEST configureMkdir from config.programs(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/programs.py:109) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:109) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/programs.py:131) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:131) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-wtq6TW All intermediate test results are stored in /tmp/petsc-wtq6TW/config.programs sh: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-wtq6TW/config.programs/sed1" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-wtq6TW/config.programs/sed1" sh: Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/tmp/petsc-wtq6TW/config.programs/diff1" "/tmp/petsc-wtq6TW/config.programs/diff2" Executing: "/usr/bin/diff" -w "/tmp/petsc-wtq6TW/config.programs/diff1" "/tmp/petsc-wtq6TW/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/Fabio/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/sourceControl.py:23) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:23) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 1.9.3) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/sourceControl.py:34) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:34) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" sh: cvs --version Executing: cvs --version sh: Concurrent Versions System (CVS) 1.12.13 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/sourceControl.py:43) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:43) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...found Defined make macro "SVN" to "svn" sh: svn --version -q Executing: svn --version -q sh: 1.7.5 ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 3 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 2 #define PETSC_VERSION_DATE "Jun, 5, 2012" #define PETSC_VERSION_PATCH_DATE "Fri Jul 13 15:42:00 CDT 2012" #define PETSC_VERSION_HG "e698eb8590254ea5b3cb432916dc188f6a4cf628" #define PETSC_VERSION_DATE_HG "Fri Jul 13 15:41:41 2012 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2" Defined "DIR" to ""/cygdrive/d/Workspace/PETSc/petsc-3.3-p2"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/petscdir.py:75) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:75) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/petscdir.py:82) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:82) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py:1472) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1472) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py:1453) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1453) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py:379) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:379) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py:389) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:389) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py:505) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:505) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/BIN/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/bin/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/Microsoft .NET Framework 3.5 (Pre-Release Version)/win32fe...not found Checking for program /cygdrive/c/Windows/Microsoft.NET/Framework/v2.0.50727/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/VCPackages/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/PlatformSDK/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/win32fe...not found Checking for program /cygdrive/c/Python26/win32fe...not found Checking for program /cygdrive/c/Python26/Scripts/win32fe...not found Checking for program /usr/lib/lapack/win32fe...not found Checking for program /home/Fabio/win32fe...not found Checking for program /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-wtq6TW/config.setCompilers sh: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -c -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.o -I/tmp/petsc-wtq6TW/config.setCompilers /tmp/petsc-wtq6TW/config.setCompilers/conftest.c Executing: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -c -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.o -I/tmp/petsc-wtq6TW/config.setCompilers /tmp/petsc-wtq6TW/config.setCompilers/conftest.c sh: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } sh: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -c -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.o -I/tmp/petsc-wtq6TW/config.setCompilers /tmp/petsc-wtq6TW/config.setCompilers/conftest.c Executing: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -c -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.o -I/tmp/petsc-wtq6TW/config.setCompilers /tmp/petsc-wtq6TW/config.setCompilers/conftest.c sh: conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.exe /tmp/petsc-wtq6TW/config.setCompilers/conftest.o Executing: /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.exe /tmp/petsc-wtq6TW/config.setCompilers/conftest.o sh: LINK : fatal error LNK1104: cannot open file 'kernel32.lib' Possible ERROR while running linker: output: LINK : fatal error LNK1104: cannot open file 'kernel32.lib' ret = 512 Pushing language C Popping language C in /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl -o /tmp/petsc-wtq6TW/config.setCompilers/conftest.exe /tmp/petsc-wtq6TW/config.setCompilers/conftest.o Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile/link C with /cygdrive/d/Workspace/PETSc/petsc-3.3-p2/bin/win32fe/win32fe cl. Deleting "CC" **** Configure header conftest.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef PETSC_DIR #define PETSC_DIR "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2" #endif #ifndef HAVE_GZIP #define HAVE_GZIP 1 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_EXTERN_CXX #define PETSC_USE_EXTERN_CXX #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #endif **** C specific Configure header conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- C compiler you provided with -with-cc=win32fe cl does not work ******************************************************************************* File "./config/configure.py", line 311, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/framework.py", line 933, in configure child.configure() File "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py", line 1487, in configure self.executeTest(self.checkCCompiler) File "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py", line 509, in checkCCompiler for compiler in self.generateCCompilerGuesses(): File "/cygdrive/d/Workspace/PETSc/petsc-3.3-p2/config/BuildSystem/config/setCompilers.py", line 442, in generateCCompilerGuesses raise RuntimeError('C compiler you provided with -with-cc='+self.framework.argDB['with-cc']+' does not work')