Here is the answer:<br><br><a href="http://comments.gmane.org/gmane.comp.clustering.open-mpi.user/12804">http://comments.gmane.org/gmane.comp.clustering.open-mpi.user/12804</a><br><br><br><div class="gmail_quote">On Mon, Aug 6, 2012 at 4:37 PM, Sanjay Govindjee <span dir="ltr"><<a href="mailto:s_g@berkeley.edu" target="_blank">s_g@berkeley.edu</a>></span> wrote:<br>
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Did you remember to 'source iccvars.sh' first?<div><div class="h5"><br>
<br>
<div>On 8/6/12 7:18 AM, Adam Stanier wrote:<br>
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Hello,<br>
<br>
I'm trying to configure PETSc 3.2-p7 with intel composer
xe 2011 mpi libraries. This is the configure line I have
been using:<br>
<br>
./configure --with-cc=mpiicc --with-cxx=mpiicpc
--with-fc=mpiifort
--with-blas-lapack-dir=/usr/local/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/
--with-blacs-lib=/usr/local/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.a
--with-blacs-include=/usr/local/intel/composer_xe_2011_sp1.6.233/mkl/include
--with-scalapack-lib=/usr/local/intel/composer_xe_2011_sp1.6.233/mkl/lib/intel64/libmkl_scalapack_lp64.a
--with-scalapack-include=/usr/local/intel/composer_xe_2011_sp1.6.233/mkl/include
--download-parmetis --download-mumps
--download-superlu_dist --download-hypre
--with-mpi-dir=/usr/local/intel/impi/<a href="http://4.0.3.008/intel64/" target="_blank">4.0.3.008/intel64/</a>
--with-debugging=0<br>
<br>
This is fine for making PETSc, but when I try to run a
code based on the PETSc libraries I get the following
error:<br>
./sel: symbol lookup error: ./sel: undefined symbol:
__intel_sse2_strchr<br>
<br>
I don't get this error when I set --with-debugging=1 with
everything else the same.<br>
<br>
Apparently this symbol should be within the libirc.a
library. I notice that PETSc is looking in a folder for
gcc for this library:<br>
-L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 <br>
<br>
but I want to use the version within the intel lib
directory:<br>
/usr/local/intel/composer_xe_2011_sp1.6.233/compiler/lib/intel64<br>
<br>
Is there a way to do this? I couldn't find anything by
searching.<br>
<br>
Many Thanks,<br>
Adam<br>
<br>
<br>
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</div></div><pre cols="72">--
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Sanjay Govindjee, PhD, PE
Professor of Civil Engineering
Vice Chair for Academic Affairs
779 Davis Hall
Structural Engineering, Mechanics and Materials
Department of Civil Engineering
University of California
Berkeley, CA 94720-1710
Voice: <a href="tel:%2B1%20510%20642%206060" value="+15106426060" target="_blank">+1 510 642 6060</a>
FAX: <a href="tel:%2B1%20510%20643%205264" value="+15106435264" target="_blank">+1 510 643 5264</a>
<a href="mailto:s_g@berkeley.edu" target="_blank">s_g@berkeley.edu</a>
<a href="http://www.ce.berkeley.edu/%7Esanjay" target="_blank">http://www.ce.berkeley.edu/~sanjay</a>
-----------------------------------------------
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</blockquote></div><br><br clear="all"><br>-- <br>Zhengyong Ren<br>AUG Group, Institute of Geophysics<br>Department of Geosciences, ETH Zurich<br>NO H 47 Sonneggstrasse 5<br>CH-8092, Zürich, Switzerland<br>Tel: +41 44 633 37561<br>
e-mail: <a href="mailto:zhengyong.ren@aug.ig.erdw.ethz.ch">zhengyong.ren@aug.ig.erdw.ethz.ch</a><br>Gmail: <a href="mailto:renzhengyong@gmail.com">renzhengyong@gmail.com</a><br>