Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC =============================================================================== ** Cygwin-python detected. Threads do not work correctly. *** ** Disabling thread usage for this run of ./configure ******* =============================================================================== ================================================================================ ================================================================================ Starting Configure Run at Wed Nov 16 11:06:28 2011 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-fc="win32fe ifort" --with-cxx="win32fe cl" --download-f-blas-lapack=1 --useThreads=0 Working directory: /cygdrive/c/Yixun/VC/petsc-3.2-p5 Machine platform: ('CYGWIN_NT-5.2-WOW64', 'CC1DR1C515W05', '1.7.9(0.237/5/3)', '2011-03-29 10:10', 'i686', '') Python version: 2.6.5 (r265:79063, Jun 12 2010, 17:07:01) [GCC 4.3.4 20090804 (release) 1] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/framework.py:813) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:813) ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/gdb...not found Checking for program /cygdrive/c/WINDOWS/gdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/gdb...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/gdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/gdb...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/gdb...not found Checking for program /cygdrive/c/Program/cvsnt/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/gdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/gdb...not found Checking for program /usr/lib/lapack/gdb...not found Checking for program /home/liuy14/gdb...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/dbx...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/dbx...not found Checking for program /cygdrive/c/Program/cvsnt/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/dbx...not found Checking for program /usr/lib/lapack/dbx...not found Checking for program /home/liuy14/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/xdb...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/xdb...not found Checking for program /cygdrive/c/Program/cvsnt/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/xdb...not found Checking for program /usr/lib/lapack/xdb...not found Checking for program /home/liuy14/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/system32/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/dsymutil...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/dsymutil...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/dsymutil...not found Checking for program /cygdrive/c/Program/cvsnt/dsymutil...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/dsymutil...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/dsymutil...not found Checking for program /usr/lib/lapack/dsymutil...not found Checking for program /home/liuy14/dsymutil...not found Defined make macro "DSYMUTIL" to "true" ================================================================================ TEST configureCMake from PETSc.utilities.CMake(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/CMake.py:21) TESTING: configureCMake from PETSc.utilities.CMake(config/PETSc/utilities/CMake.py:21) Check various things about cmake Checking for program /usr/local/bin/cmake...not found Checking for program /usr/bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/cmake...not found Checking for program /cygdrive/c/WINDOWS/system32/cmake...not found Checking for program /cygdrive/c/WINDOWS/cmake...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/cmake...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/cmake...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/cmake...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/cmake...not found Checking for program /cygdrive/c/Program/cvsnt/cmake...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/cmake...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/cmake...not found Checking for program /usr/bin/cmake...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/cmake...not found Checking for program /usr/lib/lapack/cmake...not found Checking for program /home/liuy14/cmake...not found ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/languages.py:45) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:45) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/languages.py:51) TESTING: configureLanguageSupport from PETSc.utilities.languages(config/PETSc/utilities/languages.py:51) Check c-support c++-support and other misc tests Turning off C++ support Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/languages.py:68) TESTING: configureExternC from PETSc.utilities.languages(config/PETSc/utilities/languages.py:68) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/languages.py:74) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:74) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMake from config.programs(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/programs.py:23) TESTING: configureMake from config.programs(config/BuildSystem/config/programs.py:23) Check various things about make Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Checking for program /usr/local/bin/strings...not found Checking for program /usr/bin/strings...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/strings...not found Checking for program /cygdrive/c/WINDOWS/system32/strings...not found Checking for program /cygdrive/c/WINDOWS/strings...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/strings...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/strings...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/strings...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/strings...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/strings...not found Checking for program /cygdrive/c/Program/cvsnt/strings...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/strings...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/strings...not found Checking for program /usr/bin/strings...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/strings...not found Checking for program /usr/lib/lapack/strings...not found Checking for program /home/liuy14/strings...not found sh: /usr/bin/make -v dummy-foobar Executing: /usr/bin/make -v dummy-foobar sh: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i686-pc-cygwin Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} module multiprocessing found: using make_np =9 Defined make macro "MAKE_NP" to "9" ================================================================================ TEST configureMkdir from config.programs(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/programs.py:99) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:99) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/programs.py:121) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:121) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /tmp/petsc-LlpF25 All intermediate test results are stored in /tmp/petsc-LlpF25/config.programs sh: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-LlpF25/config.programs/sed1" Executing: /usr/bin/sed -i s/sed/sd/g "/tmp/petsc-LlpF25/config.programs/sed1" sh: Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: "/usr/bin/diff" -w "/tmp/petsc-LlpF25/config.programs/diff1" "/tmp/petsc-LlpF25/config.programs/diff2" Executing: "/usr/bin/diff" -w "/tmp/petsc-LlpF25/config.programs/diff1" "/tmp/petsc-LlpF25/config.programs/diff2" sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/liuy14/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMercurial from config.sourceControl(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/sourceControl.py:23) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:23) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" sh: hg version -q Executing: hg version -q sh: Mercurial Distributed SCM (version 1.9.3) ================================================================================ TEST configureCVS from config.sourceControl(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/sourceControl.py:34) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:34) Find the CVS executable Checking for program /usr/local/bin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" sh: cvs --version Executing: cvs --version sh: Concurrent Versions System (CVS) 1.12.13 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Senior active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS ================================================================================ TEST configureSubversion from config.sourceControl(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/sourceControl.py:43) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:43) Find the Subversion executable Checking for program /usr/local/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/svn...not found Checking for program /cygdrive/c/WINDOWS/system32/svn...not found Checking for program /cygdrive/c/WINDOWS/svn...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/svn...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/svn...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/svn...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/svn...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/svn...not found Checking for program /cygdrive/c/Program/cvsnt/svn...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/svn...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/svn...not found Checking for program /usr/bin/svn...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/svn...not found Checking for program /usr/lib/lapack/svn...not found Checking for program /home/liuy14/svn...not found ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/petscdir.py:28) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:28) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 2 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 5 #define PETSC_VERSION_DATE "Sep, 8, 2011" #define PETSC_VERSION_PATCH_DATE "Sat Oct 29 13:45:54 CDT 2011" #define PETSC_VERSION_HG "bab12a7d073a6c7983421e06bc3095dbed94e6d4" #define PETSC_VERSION_DATE_HG "Sat Oct 29 13:41:37 2011 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/cygdrive/c/Yixun/VC/petsc-3.2-p5" Defined "DIR" to ""/cygdrive/c/Yixun/VC/petsc-3.2-p5"" ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/petscdir.py:75) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:75) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/petscdir.py:82) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:82) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST resetEnvCompilers from config.setCompilers(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py:1465) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1465) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py:1445) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1445) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST checkVendor from config.setCompilers(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py:377) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:377) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py:387) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:387) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py:501) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:501) Locate a functional C compiler Checking for program /usr/local/bin/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CA/SC/CAWIN/win32fe...not found Checking for program /cygdrive/c/WINDOWS/system32/win32fe...not found Checking for program /cygdrive/c/WINDOWS/win32fe...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/CA/DSM/bin/win32fe...not found Checking for program /cygdrive/c/PROGRA~2/CA/SC/CAM/bin/win32fe...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/win32fe...not found Checking for program /cygdrive/c/WINDOWS/system32/WindowsPowerShell/v1.0/win32fe...not found Checking for program /cygdrive/c/Program/cvsnt/win32fe...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win32fe...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2008b/bin/win64/win32fe...not found Checking for program /usr/bin/win32fe...not found Checking for program /cygdrive/c/Qt/4.7.4/bin/win32fe...not found Checking for program /usr/lib/lapack/win32fe...not found Checking for program /home/liuy14/win32fe...not found Checking for program /cygdrive/c/Yixun/VC/petsc-3.2-p5/bin/win32fe/win32fe...found Defined make macro "CC" to "/cygdrive/c/Yixun/VC/petsc-3.2-p5/bin/win32fe/win32fe cl" Pushing language C All intermediate test results are stored in /tmp/petsc-LlpF25/config.setCompilers sh: /cygdrive/c/Yixun/VC/petsc-3.2-p5/bin/win32fe/win32fe cl -c -o /tmp/petsc-LlpF25/config.setCompilers/conftest.o -I/tmp/petsc-LlpF25/config.setCompilers /tmp/petsc-LlpF25/config.setCompilers/conftest.c Executing: /cygdrive/c/Yixun/VC/petsc-3.2-p5/bin/win32fe/win32fe cl -c -o /tmp/petsc-LlpF25/config.setCompilers/conftest.o -I/tmp/petsc-LlpF25/config.setCompilers /tmp/petsc-LlpF25/config.setCompilers/conftest.c sh: Possible ERROR while running compiler: ret = 64512 Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Error testing C compiler: Cannot compile C with /cygdrive/c/Yixun/VC/petsc-3.2-p5/bin/win32fe/win32fe cl. Deleting "CC" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- C compiler you provided with -with-cc=win32fe cl does not work ******************************************************************************* File "./config/configure.py", line 283, in petsc_configure framework.configure(out = sys.stdout) File "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/framework.py", line 925, in configure child.configure() File "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py", line 1480, in configure self.executeTest(self.checkCCompiler) File "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/base.py", line 115, in executeTest ret = apply(test, args,kargs) File "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py", line 505, in checkCCompiler for compiler in self.generateCCompilerGuesses(): File "/cygdrive/c/Yixun/VC/petsc-3.2-p5/config/BuildSystem/config/setCompilers.py", line 438, in generateCCompilerGuesses raise RuntimeError('C compiler you provided with -with-cc='+self.framework.argDB['with-cc']+' does not work')