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<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">(gdb) bt<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#0 0x000000360462e21d in raise () from /lib64/tls/libc.so.6<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#1 0x000000360462fa1e in abort () from /lib64/tls/libc.so.6<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#2 0x0000000002256329 in Petsc_MPI_Abort ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#3 0x00000000023fa16b in PetscOptionsInsert ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#4 0x00000000023fbe45 in PetscOptionsFindPair_Private ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#5 0x00000000023fd5af in PetscOptionsGetString ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#6 0x0000000002339d26 in MatMFFDInitializePackage ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#7 0x00000000022a2660 in MatInitializePackage ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">#8 0x0000000002343c4e in MatCreate ()<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">1, does petsc support multiple threads, if I compiled libpetsc.a with –with-mpi=0?<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">2, is the following usage right?<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">While(1)<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">{<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy"> ReceiveJobfromServer();<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">
</span></font><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy">PetscInitialize(); //to avoid a SIGTERM error, I move the call of PetscInitialize into the loop.<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy"> handleJob();<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy"> PetscFinalize();</span></font><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy"><o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">}<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy"><o:p> </o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">Thanks,<o:p></o:p></span></font></p>
<p class="MsoNormal"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;font-family:Arial;color:navy">Debao<o:p></o:p></span></font></p>
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<p class="MsoNormal"><b><font size="2" face="Tahoma"><span lang="EN-US" style="font-size:10.0pt;font-family:Tahoma;font-weight:bold">From:</span></font></b><font size="2" face="Tahoma"><span lang="EN-US" style="font-size:10.0pt;font-family:Tahoma"> petsc-users-bounces@mcs.anl.gov
[mailto:petsc-users-bounces@mcs.anl.gov] <b><span style="font-weight:bold">On Behalf Of
</span></b>Aron Ahmadia<br>
<b><span style="font-weight:bold">Sent:</span></b> Tuesday, August 09, 2011 4:39 PM<br>
<b><span style="font-weight:bold">To:</span></b> PETSc users list<br>
<b><span style="font-weight:bold">Subject:</span></b> Re: [petsc-users] PETSC ERROR: PetscFinalize() line 968 in src/sys/objects/pinit.c</span></font><span lang="EN-US"><o:p></o:p></span></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt"><o:p> </o:p></span></font></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt">Debao,<o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt"><o:p> </o:p></span></font></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt">What is the complete traceback for this problem? <o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt"><o:p> </o:p></span></font></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt">A<o:p></o:p></span></font></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt">On Tue, Aug 9, 2011 at 11:12 AM, Debao Shao <<a href="mailto:Debao.Shao@brion.com">Debao.Shao@brion.com</a>> wrote:<o:p></o:p></span></font></p>
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<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="IT" style="font-size:9.0pt;font-family:
Arial;color:navy">DA,
</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="IT" style="font-size:9.0pt;font-family:
Arial;color:navy"> </span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy">Do you happen to know what may cause this error?</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy"> “[0]PETSC ERROR: PetscFinalize() line 968 in src/sys/objects/pinit.c”</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy"> </span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy">After reporting this error, the job can run continued, but it
will aborted when encountering next petsc related features even with calling PetscInitialize() again, and say:</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy"> “Options have not been enabled.</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy"> You might have forgotten to call PetscInitialize().”</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy"> </span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy">Here is line 968:</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="EN-US" style="font-size:9.0pt;
font-family:Arial;color:navy">
</span></font><font size="1" color="blue" face="Arial"><span lang="IT" style="font-size:9.0pt;font-family:
Arial;color:blue">ierr = MPI_Finalize();CHKERRQ(ierr);</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="IT" style="font-size:9.0pt;font-family:
Arial;color:navy"> </span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="IT" style="font-size:9.0pt;font-family:
Arial;color:navy">Thanks,</span></font><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><font size="1" color="navy" face="Arial"><span lang="IT" style="font-size:9.0pt;font-family:
Arial;color:navy">Debao</span></font><span lang="EN-US"><o:p></o:p></span></p>
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<p class="MsoNormal"><font size="3" face="Times New Roman"><span lang="EN-US" style="font-size:12.0pt"><o:p> </o:p></span></font></p>
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