<div dir="ltr"><meta http-equiv="content-type" content="text/html; charset=utf-8"><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Hi all,</span></font><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">
<br></div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">I am having trouble configuring PETSc 3.1-p8 with ParMetis 3.2 and below (I have tried all of their versions). What I can understand from the configure.log (attached below) is that for some reason PETSc cannot find the libs . I have tried the flag --download-parmetis=/path/to/tar.gz and also tried compiling ParMetis myself and using --with-parmetis-dir=/path/to/build_dir and none seem to work. In the latter case, ParMetis compiles just fine but it does not put the libs and header files under /build_dir/include or /buid_dir/lib. </div>
<div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><br></div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">Does using --with-parmetis-include and --with-parmetis-lib work with multiple directory locations? I tried putting all the hear files in one directory but there are multiple header files with the same name and I do not know which one I should use. Any help is greatly appreciated.</div>
<div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><br></div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">Thanks,</div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; ">
Mohammad</div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><br></div><div style="border-collapse: collapse; font-family: arial, sans-serif; font-size: 13px; "><br></div><div><div>
<font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">================================================================================</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">TEST configureLibrary from PETSc.packages.ParMetis(/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py:370)</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">TESTING: configureLibrary from PETSc.packages.ParMetis(config/BuildSystem/config/package.py:370)</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Find an installation and check if it can work with PETSc</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">==================================================================================</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Checking for a functional ParMetis</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Found a copy of PARMETIS in ParMetis-3.2.0</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Pushing language C</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Popping language C</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Have to rebuild ParMetis, make.inc != /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/conf/ParMetis</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> ===============================================================================</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Compiling & installing Parmetis; this may take several minutes</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> ===============================================================================</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: cd /home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0; make clean; make lib; make minstall; make clean</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Executing: cd /home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0; make clean; make lib; make minstall; make clean</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: (cd METISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd ParMETISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd Programs ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o ;\</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><span class="Apple-tab-span" style="white-space:pre"> </span>rm -f ../Graphs/ptest3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/mtest3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/parmetis3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/pometis3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd METISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd ParMETISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd Programs ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o ;\</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><span class="Apple-tab-span" style="white-space:pre"> </span>rm -f ../Graphs/ptest3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/mtest3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/parmetis3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/pometis3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><br></span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">********Output of running make on ParMetis follows *******</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd METISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd ParMETISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd Programs ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o ;\</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><span class="Apple-tab-span" style="white-space:pre"> </span>rm -f ../Graphs/ptest3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/mtest3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/parmetis3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/pometis3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd METISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/METISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd ParMETISLib ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/ParMETISLib'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">(cd Programs ; make clean )</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Entering directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f *.o ;\</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><span class="Apple-tab-span" style="white-space:pre"> </span>rm -f ../Graphs/ptest3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/mtest3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/parmetis3.2.0 </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">rm -f ../Graphs/pometis3.2.0 </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make[1]: Leaving directory `/home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/Programs'</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make: *** No rule to make target `lib'. Stop.</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">make: *** No rule to make target `minstall'. Stop.</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">********End of Output of running make on ParMetis *******</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: cp -f /home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/make.inc /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/conf/ParMetis</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Executing: cp -f /home/mohammad/soft/petsc-3.1-p8-debug/externalpackages/ParMetis-3.2.0/make.inc /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/conf/ParMetis</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Checking for library in Download PARMETIS: ['/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib/libparmetis.a', 'libmetis.a']</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">================================================================================</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">TEST check from config.libraries(/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/libraries.py:133)</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:133)</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName"</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> - libDir may be a list of directories</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> - libName may be a list of library names</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Checking for functions ['ParMETIS_V3_PartKway'] in library ['/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib/libparmetis.a', 'libmetis.a'] ['libnsl.a', 'librt.a']</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Pushing language C</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/bin/mpicc -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Executing: /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/bin/mpicc -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Pushing language C</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Popping language C</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/bin/mpicc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -L/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -lparmetis -lmetis -lnsl -lrt -lmpichcxx -lstdc++ -L/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lpthread -lrt -lgcc_s -ldl </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Executing: /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/bin/mpicc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -L/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -lparmetis -lmetis -lnsl -lrt -lmpichcxx -lstdc++ -L/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lpthread -lrt -lgcc_s -ldl </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">sh: </span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Possible ERROR while running linker: /usr/bin/ld: cannot find -lparmetis</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">collect2: ld returned 1 exit status</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> output: ret = 256</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">error message = {/usr/bin/ld: cannot find -lparmetis</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">collect2: ld returned 1 exit status</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">}</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Pushing language C</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Popping language C</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> in /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/bin/mpicc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -Wl,-rpath,/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -L/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -lparmetis -lmetis -lnsl -lrt -lmpichcxx -lstdc++ -L/home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.3 -L/usr/lib/x86_64-linux-gnu -ldl -lmpich -lpthread -lrt -lgcc_s -ldl </span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Source:</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">#include "confdefs.h"</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">#include "conffix.h"</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">/* Override any gcc2 internal prototype to avoid an error. */</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">char ParMETIS_V3_PartKway();</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"><br>
</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">int main() {</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">ParMETIS_V3_PartKway()</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">;</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> return 0;</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">}</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> Popping language C</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">*******************************************************************************</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">-------------------------------------------------------------------------------</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">Downloaded parmetis could not be used. Please check install in /home/mohammad/soft/petsc-3.1-p8-debug/linux-gnu-c-debug</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;">*******************************************************************************</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> File "./config/configure.py", line 257, in petsc_configure</span></font></div><div>
<font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> framework.configure(out = sys.stdout)</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> File "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/framework.py", line 944, in configure</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> child.configure()</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> File "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py", line 456, in configure</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> self.executeTest(self.configureLibrary)</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> File "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/base.py", line 97, in executeTest</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> ret = apply(test, args,kargs)</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> File "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py", line 395, in configureLibrary</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> for location, directory, lib, incl in self.generateGuesses():</span></font></div><div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> File "/home/mohammad/soft/petsc-3.1-p8-debug/config/BuildSystem/config/package.py", line 210, in generateGuesses</span></font></div>
<div><font class="Apple-style-span" face="arial, sans-serif"><span class="Apple-style-span" style="border-collapse: collapse;"> raise RuntimeError('Downloaded '+self.package+' could not be used. Please check install in '+d+'\n')</span></font></div>
</div></div>