<div dir="ltr">Hi all,<div><br></div><div>I just noticed that when compiling petsc-3.1-p7 with hypre-2.0.0, running make test results in the following undefined reference error on ex19 and ex5f:</div><div><br></div><div><div>
<div>--------------Error detected during compile or link!-----------------------</div><div>See <a href="http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html">http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html</a></div>
<div>/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/bin/mpicc -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -I/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/include -I/home/m.mirzadeh/soft/petsc-3.1-p7/include -I/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/include -D__INSDIR__=src/snes/examples/tutorials/ ex19.c</div>
<div>/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -o ex19 ex19.o -Wl,-rpath,/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -L/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -lpetsc -lX11 -Wl,-rpath,/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -L/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -lHYPRE -lmpichcxx -lstdc++ -lflapack -lfblas -lnsl -lrt -L/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -ldl -lmpich -lpthread -lrt -lgcc_s -lmpichf90 -lgfortran -lm -lm -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lpthread -lrt -lgcc_s -ldl </div>
<div>/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib/libpetsc.a(mhyp.o): In function `MatZeroEntries_HYPREStruct_3d':</div><div>/home/m.mirzadeh/soft/petsc-3.1-p7/src/dm/da/utils/mhyp.c:397: undefined reference to `hypre_StructMatrixClearBoxValues'</div>
<div>collect2: ld returned 1 exit status</div><div>make[3]: [ex19] Error 1 (ignored)</div><div>/bin/rm -f ex19.o</div><div><br></div><div>--------------Error detected during compile or link!-----------------------</div><div>
See <a href="http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html">http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html</a></div><div>/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/bin/mpif90 -c -Wall -Wno-unused-variable -g -I/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/include -I/home/m.mirzadeh/soft/petsc-3.1-p7/include -I/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/include -I/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/include -I/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/include -o ex5f.o ex5f.F</div>
<div>/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/bin/mpif90 -Wall -Wno-unused-variable -g -o ex5f ex5f.o -Wl,-rpath,/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -L/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -lpetsc -lX11 -Wl,-rpath,/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -L/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -lHYPRE -lmpichcxx -lstdc++ -lflapack -lfblas -lnsl -lrt -L/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -ldl -lmpich -lpthread -lrt -lgcc_s -lmpichf90 -lgfortran -lm -lm -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl -lmpich -lpthread -lrt -lgcc_s -ldl </div>
<div>/home/m.mirzadeh/soft/petsc-3.1-p7/linux-gnu-c-debug/lib/libpetsc.a(mhyp.o): In function `MatZeroEntries_HYPREStruct_3d':</div><div>/home/m.mirzadeh/soft/petsc-3.1-p7/src/dm/da/utils/mhyp.c:397: undefined reference to `hypre_StructMatrixClearBoxValues'</div>
<div>collect2: ld returned 1 exit status</div><div>make[3]: [ex5f] Error 1 (ignored)</div><div>/bin/rm -f ex5f.o</div><div>Completed test examples</div></div></div><div><br></div><div>It seems that the function "hypre_StructMatrixClearBoxValues()" is not properly defined. This problem is new as I didn't have any trouble with petsc-3.0.0-p12.</div>
<div><br></div><div>Mohammad</div><meta http-equiv="content-type" content="text/html; charset=utf-8"></div>