<html><head><base href="x-msg://19/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">I am new to PETSc too.<div>OpenMPI and Intel compiler (ifort).</div><div>Unfortunately -mcmodel=medium doesn't help.</div><div><br></div><div>Thanks anyway</div><div>Valerio</div><div><br></div><div><br><div><div>On 2010-06-18, at 12:24 AM, Sankaran, Loganathan (Solution Technology Services) wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div lang="EN-US" link="blue" vlink="purple" style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div class="Section1" style="page: Section1; "><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(31, 73, 125); ">I am new to PETSc. What MPI and What compiler ? If it is Intel compiler, add –mcmodel=medium to the compile line and see that helps.<o:p></o:p></span></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></span></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(31, 73, 125); ">Logan<o:p></o:p></span></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10pt; font-family: Arial, sans-serif; color: rgb(31, 73, 125); "><o:p> </o:p></span></div><div><div style="border-right-style: none; border-bottom-style: none; border-left-style: none; border-width: initial; border-color: initial; border-top-style: solid; border-top-color: rgb(181, 196, 223); border-top-width: 1pt; padding-top: 3pt; padding-right: 0in; padding-bottom: 0in; padding-left: 0in; "><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><b><span style="font-size: 10pt; font-family: Tahoma, sans-serif; ">From:</span></b><span style="font-size: 10pt; font-family: Tahoma, sans-serif; "><span class="Apple-converted-space"> </span><a href="mailto:petsc-users-bounces@mcs.anl.gov" style="color: blue; text-decoration: underline; ">petsc-users-bounces@mcs.anl.gov</a><span class="Apple-converted-space"> </span>[mailto:petsc-users-bounces@mcs.anl.gov]<span class="Apple-converted-space"> </span><b>On Behalf Of<span class="Apple-converted-space"> </span></b>Valerio Grazioso<br><b>Sent:</b><span class="Apple-converted-space"> </span>Thursday, June 17, 2010 11:20 PM<br><b>To:</b><span class="Apple-converted-space"> </span><a href="mailto:petsc-users@mcs.anl.gov" style="color: blue; text-decoration: underline; ">petsc-users@mcs.anl.gov</a><br><b>Subject:</b><span class="Apple-converted-space"> </span>[petsc-users] Segmentation Violation in a very simple fortran code<o:p></o:p></span></div></div></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><o:p> </o:p></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; ">Hi, I'm stuck with an implementation of a 3D Poisson solver with PETSc in fortran90.<o:p></o:p></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; ">I was getting strange Segmentation Violation and after some debugging I realized that the the problem was in the vector created with <o:p></o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><o:p> </o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; ">DACreateGlobalVector() <o:p></o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><o:p> </o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; ">So I've written a simple code:<o:p></o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><o:p> </o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 10.5pt; font-family: Menlo, serif; ">****************************************************************************</span></span><o:p></o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><o:p> </o:p></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">program PetscTest<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">implicit none<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">Vec q<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">PetscScalar alpha<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">DA da<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">PetscErrorCode err<o:p></o:p></span></div></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; min-height: 16px; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">PetscInt i3,i1<o:p></o:p></span></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">i3=4<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">i1=1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">call DACreate3d(PETSC_COMM_WORLD,DA_NONPERIODIC,DA_STENCIL_STAR,i3,i3,i3,PETSC_DECIDE,PETSC_DECIDE,PETSC_DECIDE,i1,i1, & <o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "> PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,da,err)<o:p></o:p></span></div></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; min-height: 16px; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; min-height: 16px; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">call DACreateGlobalVector(da,q,err)<o:p></o:p></span></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">alpha=1.0<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">call VecSet(q,alpha,err)<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">call vecView(q,PETSC_VIEWER_STDOUT_WORLD)<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">call VecDestroy(q,err);<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">call PetscFinalize(PETSC_NULL_CHARACTER,err)<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">end program <o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">****************************************************************************<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "> And this is the output that i get if I run the executable with </span></span><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; ">mpirun -n 2 ./PetscTest -da_view</span></span><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 10.5pt; font-family: Menlo, serif; ">****************************************************************************</span></span><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">Processor [0] M 4 N 4 P 4 m 1 n 1 p 2 w 1 s 1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">X range of indices: 0 4, Y range of indices: 0 4, Z range of indices: 0 2<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">Processor [1] M 4 N 4 P 4 m 1 n 1 p 2 w 1 s 1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">X range of indices: 0 4, Y range of indices: 0 4, Z range of indices: 2 4<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">Process [0]<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">Process [1]<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: or see<span class="Apple-converted-space"> </span><a href="http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC" style="color: blue; text-decoration: underline; ">http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC</a><span class="Apple-converted-space"> </span>ERROR: or try<span class="Apple-converted-space"> </span><a href="http://valgrind.org" style="color: blue; text-decoration: underline; ">http://valgrind.org</a><span class="Apple-converted-space"> </span>on GNU/linux and Apple Mac OS X to find memory corruption errors<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: likely location of problem given in stack below<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: --------------------- Stack Frames ------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: [0]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">Note: The EXACT line numbers in the stack are not available,<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: INSTEAD the line number of the start of the function<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: is given.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: --------------------- Error Message ------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Signal received!<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Petsc Release Version 3.1.0, Patch 3, Fri Jun 4 15:34:52 CDT 2010<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: See docs/changes/index.html for recent updates.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: See docs/index.html for manual pages.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: ./PetscTest on a linux-gnu named up0001 by hpc2231 Thu Jun 17 23:58:50 2010<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Libraries linked from /home/hpc2231/lib/petsc-3.1-p3/linux-gnu-c-debug/lib<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Configure run at Thu Jun 17 23:00:54 2010<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: Configure options LIBS="-limf -lm" --download-hypre=1 --with-fortran-interfaces=1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[1]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: or see<span class="Apple-converted-space"> </span><a href="http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC" style="color: blue; text-decoration: underline; ">http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC</a><span class="Apple-converted-space"> </span>ERROR: or try<span class="Apple-converted-space"> </span><a href="http://valgrind.org" style="color: blue; text-decoration: underline; ">http://valgrind.org</a><span class="Apple-converted-space"> </span>on GNU/linux and Apple Mac OS X to find memory corruption errors<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: --------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD <o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">with errorcode 59.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">You may or may not see output from other processes, depending on<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">exactly when Open MPI kills them.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">--------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">likely location of problem given in stack below<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: --------------------- Stack Frames ------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: INSTEAD the line number of the start of the function<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: is given.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: --------------------- Error Message ------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Signal received!<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 3, Fri Jun 4 15:34:52 CDT 2010<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: See docs/changes/index.html for recent updates.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: See docs/index.html for manual pages.<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: ./PetscTest on a linux-gnu named up0001 by hpc2231 Thu Jun 17 23:58:50 2010<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Libraries linked from /home/hpc2231/lib/petsc-3.1-p3/linux-gnu-c-debug/lib<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Configure run at Thu Jun 17 23:00:54 2010<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: Configure options LIBS="-limf -lm" --download-hypre=1 --with-fortran-interfaces=1<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: ------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">--------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">mpirun has exited due to process rank 1 with PID 10883 on<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">node up0001 exiting without calling "finalize". This may<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">have caused other processes in the application to be<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">terminated by signals sent by mpirun (as reported here).<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">--------------------------------------------------------------------------<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[up0001:10881] 1 more process has sent help message help-mpi-api.txt / mpi-abort<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">[up0001:10881] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; ">****************************************************************************<o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; ">If been looking trough the troubleshooting and FAQ with no success and now I'm stuck ....</span></span><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; ">Any ideas or suggestions </span></span><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; ">Thanks</span></span><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span class="apple-style-span"><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; ">Valerio </span></span><span style="font-size: 13.5pt; font-family: Helvetica, sans-serif; "><o:p></o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "><span style="font-size: 10.5pt; font-family: Menlo, serif; "><o:p> </o:p></span></div></div><div><div style="margin-right: 0in; margin-left: 0in; font-size: 12pt; font-family: 'Times New Roman', serif; margin-top: 0in; margin-bottom: 0.0001pt; "> <o:p></o:p></div></div></div></div></span></blockquote></div><br></div></body></html>