Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /cygdrive/z/ai/pi/config/BuildSystem/config/packages/config.guess Executing: /bin/sh /cygdrive/z/ai/pi/config/BuildSystem/config/packages/config.guess sh: i686-pc-cygwin sh: /bin/sh /cygdrive/z/ai/pi/config/BuildSystem/config/packages/config.sub i686-pc-cygwin Executing: /bin/sh /cygdrive/z/ai/pi/config/BuildSystem/config/packages/config.sub i686-pc-cygwin sh: i686-pc-cygwin ================================================================================ ** Cygwin-python-2.4/2.5 detected. Threads do not work correctly with this version * ********* Disabling thread usage for this run of config/configure.py ********** ================================================================================ ================================================================================ ================================================================================ Starting Configure Run at Sun Jan 17 17:02:13 2010 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --with-cc="win32fe cl" --with-cxx="win32fe cl" --with-fc=ifort --with-mpi-dir=/cygdrive/c/MPICH2 --download-f-blas-lapack=1 --with-clanguage=C++ CXXFLAGS="-DMPICH_SKIP_MPICXX -MT -GR -EHsc" --useThreads=0 --with-shared=0 Working directory: /cygdrive/z/ai/pi Machine uname: ('CYGWIN_NT-5.2-WOW64', 'AI-Inteli7', '1.5.25(0.156/4/2)', '2008-06-12 19:34', 'i686') Python version: 2.5.2 (r252:60911, Dec 2 2008, 09:26:14) [GCC 3.4.4 (cygming special, gdc 0.12, using dmd 0.125)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/cygdrive/z/ai/petsc-3.0.0-p9/config/BuildSystem/config/framework.py:815) TESTING: configureExternalPackagesDir from config.framework(/cygdrive/z/ai/petsc-3.0.0-p9/config/BuildSystem/config/framework.py:815) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureMkdir from config.programs(/cygdrive/z/ai/petsc-3.0.0-p9/config/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(/cygdrive/z/ai/petsc-3.0.0-p9/config/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found sh: /usr/bin/mkdir -p .conftest/tmp Executing: /usr/bin/mkdir -p .conftest/tmp sh: Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/cygdrive/z/ai/petsc-3.0.0-p9/config/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(/cygdrive/z/ai/petsc-3.0.0-p9/config/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" sh: /usr/bin/sed -i s/sed/sd/g sed1 Executing: /usr/bin/sed -i s/sed/sd/g sed1 sh: Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/kmellrg_2/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/mkl/em64t/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/Bin/intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/BIN/amd64/dbx...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework64/v3.5/dbx...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework64/v3.5/Microsoft .NET Framework 3.5 (Pre-Release Version)/dbx...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework64/v2.0.50727/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/VCPackages/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/x64/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/win64/x64/dbx...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/VNI/imsl/fnl600/IA32/lib/dbx...not found Checking for program /cygdrive/c/Program files/MPICH2/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/lib/ia32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/VNI/imsl/fnl600/Intel64/lib/dbx...not found Checking for program /cygdrive/c/Program files/MPICH2/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/lib/Intel64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/mkl/em64t/bin/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/Common/Tools/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/Common/Msdev98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/DF98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/VC98/BIN/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/WinOne/dbx...not found Checking for program /cygdrive/c/WINDOWS/system32/dbx...not found Checking for program /cygdrive/c/WINDOWS/dbx...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/dbx...not found Checking for program /cygdrive/c/Program Files/Intel/DMIX/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/IDM Computer Solutions/UltraEdit-32/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/UltraCompare/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2009a/bin/dbx...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2009a/bin/win64/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/DivX Shared/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/Geosoft/Oasis montaj/bin/dbx...not found Checking for program /cygdrive/c/Program Files/Perforce/dbx...not found Checking for program /cygdrive/c/Program Files (x86)/QuickTime/QTSystem/dbx...not found Checking for program /cygdrive/c/Program Files/Perforce/Server/dbx...not found Checking for program /usr/lib/lapack/dbx...not found Checking for program /home/kmellrg_2/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/mkl/em64t/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/Bin/intel64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/BIN/amd64/xdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework64/v3.5/xdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework64/v3.5/Microsoft .NET Framework 3.5 (Pre-Release Version)/xdb...not found Checking for program /cygdrive/c/WINDOWS/Microsoft.NET/Framework64/v2.0.50727/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/VC/VCPackages/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/IDE/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio 9.0/Common7/Tools/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/x64/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/win64/x64/xdb...not found Checking for program /cygdrive/c/Program Files/Microsoft SDKs/Windows/v6.0A/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VNI/imsl/fnl600/IA32/lib/xdb...not found Checking for program /cygdrive/c/Program files/MPICH2/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/lib/ia32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/VNI/imsl/fnl600/Intel64/lib/xdb...not found Checking for program /cygdrive/c/Program files/MPICH2/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/lib/Intel64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Intel/Compiler/11.0/074/fortran/mkl/em64t/bin/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/Common/Tools/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/Common/Msdev98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/DF98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft Visual Studio/VC98/BIN/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/WinOne/xdb...not found Checking for program /cygdrive/c/WINDOWS/system32/xdb...not found Checking for program /cygdrive/c/WINDOWS/xdb...not found Checking for program /cygdrive/c/WINDOWS/System32/Wbem/xdb...not found Checking for program /cygdrive/c/Program Files/Intel/DMIX/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/IDM Computer Solutions/UltraEdit-32/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/UltraCompare/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Microsoft SQL Server/90/Tools/binn/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2009a/bin/xdb...not found Checking for program /cygdrive/c/Program Files/MATLAB/R2009a/bin/win64/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Common Files/DivX Shared/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/Geosoft/Oasis montaj/bin/xdb...not found Checking for program /cygdrive/c/Program Files/Perforce/xdb...not found Checking for program /cygdrive/c/Program Files (x86)/QuickTime/QTSystem/xdb...not found Checking for program /cygdrive/c/Program Files/Perforce/Server/xdb...not found Checking for program /usr/lib/lapack/xdb...not found Checking for program /home/kmellrg_2/xdb...not found Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureMake from PETSc.utilities.Make(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(/cygdrive/z/ai/petsc-3.0.0-p9/config/PETSc/utilities/Make.py:21) Check various things about make Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: Make check failed: Could not execute 'strings /usr/bin/make': strings: /usr/bin/make: No such file or directory sh: strings /usr/bin/make.exe Executing: strings /usr/bin/make.exe sh: [^] [^_] [^_] ?t*B [^_] [^_] ;5XpB ;5XpB 5XpB ;5hpB [^_] ;5hpB 5hpB [^_] @u-A [^] [^_] ,[^_] $.!B $J!B $S!B $S!B $X!B $S!B ,[^_] $S!B [^_] [^_] 5PyB [^_] [^_] [^_] ,[^_] 5PyB 5PyB [^_] tc<.t+ $HqB $HqB $HqB $HqB $HqB [^_] $D"B $HqB [^_] $(#B $\#B 5(qB 5HqB <[^_] $HqB $($B $3$B 5 {B $I$B $Q$B $Y$B [^_] $HqB ,[^_] $8%B $d%B $5&B $D&B $h&B $"'B $7'B L[^_] $P'B L[^_] $h'B $HqB $HqB =HqB tJ;5 [^_] $HqB t6Jt3 t6Jt3 ,[^_] ,[^_] <[^_] [^_] ,[^_] [^_] [^_] [^_] L[^_] [^_] [^_] t$Ku [^_] [^_] $8*B $l*B t