Hong Zhang,<br><br>I put --download-plapack=1 to install plapack. Is there something extra to do ?<br><br>Regards<br><br><br><br><div class="gmail_quote">2009/9/17 Hong Zhang <span dir="ltr"><<a href="mailto:hzhang@mcs.anl.gov">hzhang@mcs.anl.gov</a>></span><br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><br>
Fabio,<br>
<br>
Did you install plapack with petsc?<br>
Hong<div class="im"><br>
<br>
On Thu, 17 Sep 2009, Matthew Knepley wrote:<br>
<br>
</div><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im">
Give us the exact command line you use for ex123 and the error output. Send<br>
to petsc-maint.<br>
<br>
Matt<br>
<br>
On Thu, Sep 17, 2009 at 12:37 PM, Fabio Leite Soares <<a href="mailto:fls2@cin.ufpe.br" target="_blank">fls2@cin.ufpe.br</a>>wrote:<br>
<br>
</div><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="im">
Hi everyone, I have the same problem and I don't know how to fix it.<br>
<br>
I need to multiply two mpi dense matrices using the BLAS3 routines. I have<br>
tried the MatMatMult_MPIDense_MPIDense() function but the console shows this<br>
message:<br>
<br>
[0]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,<br>
probably memory access out of range<br>
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[0]PETSC ERROR: or see<br>
</div><a href="http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal%5B0%5DPETSC" target="_blank">http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC</a><<a href="http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal%5B0%5DPETSC" target="_blank">http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal%5B0%5DPETSC</a>>ERROR: or try<div>
<div></div><div class="h5"><br>
<a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on linux or man libgmalloc on Apple to find memory<br>
corruption errors<br>
[0]PETSC ERROR: likely location of problem given in stack below<br>
[0]PETSC ERROR: --------------------- Stack Frames<br>
------------------------------------<br>
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not<br>
available,<br>
[0]PETSC ERROR: INSTEAD the line number of the start of the function<br>
[0]PETSC ERROR: is given.<br>
[0]PETSC ERROR: [0] MatMPIDenseCopyToPlapack line 1028<br>
src/mat/impls/dense/mpi/mpidense.c<br>
[0]PETSC ERROR: [0] MatMatMultNumeric_MPIDense_MPIDense line 1078<br>
src/mat/impls/dense/mpi/mpidense.c<br>
[0]PETSC ERROR: --------------------- Error Message<br>
------------------------------------<br>
[0]PETSC ERROR: Signal received!<br>
[0]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[0]PETSC ERROR: Petsc Release Version 3.0.0, Patch 8, Fri Aug 21 14:02:12<br>
CDT 2009<br>
[0]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[0]PETSC ERROR: See docs/index.html for manual pages.<br>
[0]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[0]PETSC ERROR: ./mult on a linux-gnu named hpcin08 by hpcin Thu Sep 17<br>
14:28:28 2009<br>
[0]PETSC ERROR: Libraries linked from<br>
/home/hpcin/soft/petsc-3.0.0-p8/linux-gnu-c-debug/lib<br>
[0]PETSC ERROR: Configure run at Wed Sep 16 17:06:08 2009<br>
[0]PETSC ERROR: Configure options --download-f-blas-lapack=1<br>
--download-plapack --with-mpi-dir=/usr/local/bin/mpich2-1.1.1p1<br>
--with-scalar-type=real --with-precision=double --with-shared=0<br>
[0]PETSC ERROR: --------------------------[1]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,<br>
probably memory access out of range<br>
[1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger<br>
[1]PETSC ERROR: or see<br>
</div></div><a href="http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal%5B1%5DPETSC" target="_blank">http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC</a><<a href="http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal%5B1%5DPETSC" target="_blank">http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal%5B1%5DPETSC</a>>ERROR: or try<div>
<div></div><div class="h5"><br>
<a href="http://valgrind.org" target="_blank">http://valgrind.org</a> on linux or man libgmalloc on Apple to find memory<br>
corruption errors<br>
[1]PETSC ERROR: likely location of problem given in stack below<br>
[1]PETSC ERROR: --------------------- Stack Frames<br>
------------------------------------<br>
[1]PETSC ERROR: Note: The EXACT line numbers in the stack are not<br>
available,<br>
[1]PETSC ERROR: INSTEAD the line number of the start of the function<br>
[1]PETSC ERROR: is given.<br>
[1]PETSC ERROR: [1] MatMPIDenseCopyToPlapack line 1028<br>
src/mat/impls/dense/mpi/mpidense.c<br>
[1]PETSC ERROR: [1] MatMatMultNumeric_MPIDense_MPIDense line 1078<br>
src/mat/impls/dense/mpi/mpidense.c<br>
[1]PETSC ERR----------------------------------------------<br>
[0]PETSC ERROR: User provided function() line 0 in unknown directory<br>
unknown file<br>
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0<br>
OR: --------------------- Error Message<br>
------------------------------------<br>
[1]PETSC ERROR: Signal received!<br>
[1]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[1]PETSC ERROR: Petsc Release Version 3.0.0, Patch 8, Fri Aug 21 14:02:12<br>
CDT 2009<br>
[1]PETSC ERROR: See docs/changes/index.html for recent updates.<br>
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.<br>
[1]PETSC ERROR: See docs/index.html for manual pages.<br>
[1]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[1]PETSC ERROR: ./mult on a linux-gnu named hpcin-desktop by hpcin Thu Sep<br>
17 14:28:27 2009<br>
[1]PETSC ERROR: Libraries linked from<br>
/home/hpcin/soft/petsc-3.0.0-p8/linux-gnu-c-debug/lib<br>
[1]PETSC ERROR: Configure run at Tue Sep 15 15:57:39 2009<br>
[1]PETSC ERROR: Configure options --download-plapack=1<br>
--download-f-blas-lapack=1 --with-mpi-dir=/usr/local/bin/mpich2-1.1.1p1<br>
--with-scalar-type=real --with-precision=double --with-shared=0<br>
[1]PETSC ERROR:<br>
------------------------------------------------------------------------<br>
[1]PETSC ERROR: User provided function() line 0 in unknown directory<br>
unknown file<br>
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1<br>
rank 1 in job 1 hpcin08_34697 caused collective abort of all ranks<br>
exit status of rank 1: return code 59<br>
rank 0 in job 1 hpcin08_34697 caused collective abort of all ranks<br>
exit status of rank 0: return code 59<br>
<br>
<br>
I tried to execute the ex123.c example and I did not succeeded to.<br>
<br>
Regards<br>
<br>
--<br>
Fábio Leite Soares<br>
Undergraduate Student of Computing Engineering<br>
Centro de Informática - UFPE - BRAZIL<br>
<br>
</div></div></blockquote><div><div></div><div class="h5">
<br>
<br>
<br>
-- <br>
What most experimenters take for granted before they begin their experiments<br>
is infinitely more interesting than any results to which their experiments<br>
lead.<br>
-- Norbert Wiener<br>
</div></div></blockquote>
</blockquote></div><br><br clear="all"><br>-- <br>Fábio Leite Soares<br>Graduando em Engenharia da Computação<br>Centro de Informática - UFPE - 2007.1<br>