Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC sh: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/config.guess Executing: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/config.sub i686-pc-linux-gnu Executing: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ ================================================================================ Starting Configure Run at Wed Jun 24 16:57:28 2009 Configure Options: --configModules=PETSc.Configure --optionsModule=PETSc.compilerOptions --download-mpich=1 --with-debugger=gdb --with-fc=0 --with-cxx=0 -PETSC_ARCH=O-hypre-prometheus-tau -with-cpp=cpp --with-cc="/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" --download-hypre=1 --download-parmetis=1 --download-prometheus=1 --with-shared=0 Working directory: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5 Machine uname: ('Linux', 'vyan2000-linux', '2.6.24-24-generic', '#1 SMP Wed Apr 15 15:54:25 UTC 2009', 'i686') Python version: 2.5.2 (r252:60911, Jul 31 2008, 17:28:52) [GCC 4.2.3 (Ubuntu 4.2.3-2ubuntu7)] ================================================================================ Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/framework.py:815) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:815) ================================================================================ TEST configureLibrary from PETSc.packages.PVODE(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/packages/PVODE.py:10) TESTING: configureLibrary from PETSc.packages.PVODE(config/PETSc/packages/PVODE.py:10) Find a PVODE installation and check if it can work with PETSc ================================================================================ TEST configureLibrary from PETSc.packages.NetCDF(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/packages/NetCDF.py:10) TESTING: configureLibrary from PETSc.packages.NetCDF(config/PETSc/packages/NetCDF.py:10) Find a NetCDF installation and check if it can work with PETSc ================================================================================ TEST configureDebuggers from PETSc.utilities.debuggers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/debuggers.py:22) TESTING: configureDebuggers from PETSc.utilities.debuggers(config/PETSc/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /home/vyan2000/bin/gdb...not found Checking for program /home/vyan2000/bin/gdb...not found Checking for program /usr/local/sbin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureMkdir from config.programs(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/programs.py:21) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:21) Make sure we can have mkdir automatically make intermediate directories Checking for program /home/vyan2000/bin/mkdir...not found Checking for program /home/vyan2000/bin/mkdir...not found Checking for program /usr/local/sbin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/sbin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /sbin/mkdir...not found Checking for program /bin/mkdir...found sh: /bin/mkdir -p .conftest/tmp Executing: /bin/mkdir -p .conftest/tmp sh: Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configurePrograms from config.programs(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/programs.py:43) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:43) Check for the programs needed to build and run PETSc Checking for program /home/vyan2000/bin/sh...not found Checking for program /home/vyan2000/bin/sh...not found Checking for program /usr/local/sbin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/sbin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /sbin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /home/vyan2000/bin/sed...not found Checking for program /home/vyan2000/bin/sed...not found Checking for program /usr/local/sbin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/sbin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /sbin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" sh: /bin/sed -i s/sed/sd/g sed1 Executing: /bin/sed -i s/sed/sd/g sed1 sh: Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /home/vyan2000/bin/mv...not found Checking for program /home/vyan2000/bin/mv...not found Checking for program /usr/local/sbin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/sbin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /sbin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /home/vyan2000/bin/cp...not found Checking for program /home/vyan2000/bin/cp...not found Checking for program /usr/local/sbin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/sbin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /sbin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /home/vyan2000/bin/grep...not found Checking for program /home/vyan2000/bin/grep...not found Checking for program /usr/local/sbin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/sbin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /sbin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /home/vyan2000/bin/rm...not found Checking for program /home/vyan2000/bin/rm...not found Checking for program /usr/local/sbin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/sbin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /sbin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /home/vyan2000/bin/diff...not found Checking for program /home/vyan2000/bin/diff...not found Checking for program /usr/local/sbin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/sbin/diff...not found Checking for program /usr/bin/diff...found sh: /usr/bin/diff -w diff1 diff2 Executing: /usr/bin/diff -w diff1 diff2 sh: Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/vyan2000/ps...not found Checking for program /home/vyan2000/bin/gzip...not found Checking for program /home/vyan2000/bin/gzip...not found Checking for program /usr/local/sbin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/sbin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /sbin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" ================================================================================ TEST configureMake from PETSc.utilities.Make(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/Make.py:21) TESTING: configureMake from PETSc.utilities.Make(config/PETSc/utilities/Make.py:21) Check various things about make Checking for program /home/vyan2000/bin/make...not found Checking for program /home/vyan2000/bin/make...not found Checking for program /usr/local/sbin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/sbin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" sh: strings /usr/bin/make Executing: strings /usr/bin/make sh: /lib/ld-linux.so.2 librt.so.1 __gmon_start__ _Jv_RegisterClasses clock_gettime libc.so.6 _IO_stdin_used globfree64 fflush strcpy __rawmemchr fnmatch sprintf _IO_putc setlocale strsignal strncmp optind strrchr wait pipe __strdup dcgettext closedir glob64 strncpy sigprocmask __stack_chk_fail unlink realloc abort stdin _exit getpid kill __assert_fail feof getloadavg fgets getpwnam calloc strlen sigemptyset memset strstr __errno_location chdir dup2 __fxstat64 sigaddset ctime putenv stdout fputs memcpy fclose __strtol_internal malloc realpath remove __lxstat64 opendir __xstat64 getenv __ctype_b_loc... ... n-specific variable values current_variable_set_list->next != ((void *)0) 3.81 i486-pc-linux-gnu # VPATH Search Paths vpath %s %s%c # No `vpath' search paths. # %u `vpath' search paths. $(strip $(VPATH)) $(strip $(GPATH)) # No general (`VPATH' variable) search path. # General (`VPATH' variable) search path: Load=%ld/%ld=%.0f%%, Rehash=%d, Collisions=%ld/%ld=%.0f%% Y@can't allocate %ld bytes for hash table: memory exhausted .out .a .ln .o .c .cc .C .cpp .p .f .F .r .y .l .s .S .mod .sym .def .h .info .dvi .tex .texinfo .texi .txinfo .w .ch .web .sh .elc .el /bin/sh -c #;"*?[]&|<>(){}$`^~! Defined make macro "OMAKE " to "/usr/bin/make --no-print-directory" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC} ${SOBJSC})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureCLanguage from PETSc.utilities.languages(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/languages.py:43) TESTING: configureCLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:43) Choose between C and C++ bindings ================================================================================ TEST configureLanguageSupport from PETSc.utilities.languages(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/languages.py:49) TESTING: configureLanguageSupport from PETSc.utilities.languages(config/PETSc/utilities/languages.py:49) Check c-support c++-support and other misc tests Allowing C++ name mangling C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureExternC from PETSc.utilities.languages(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/languages.py:66) TESTING: configureExternC from PETSc.utilities.languages(config/PETSc/utilities/languages.py:66) Protect C bindings from C++ mangling Defined "USE_EXTERN_CXX" to " " ================================================================================ TEST configureFortranLanguage from PETSc.utilities.languages(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/languages.py:72) TESTING: configureFortranLanguage from PETSc.utilities.languages(config/PETSc/utilities/languages.py:72) Turn on Fortran bindings Using Fortran ================================================================================ TEST configureMercurial from config.sourceControl(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/sourceControl.py:23) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:23) Find the Mercurial executable Checking for program /home/vyan2000/bin/hg...not found Checking for program /home/vyan2000/bin/hg...not found Checking for program /usr/local/sbin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/sbin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /sbin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/games/hg...not found Checking for program /home/vyan2000/lib/hg...not found Checking for program /home/vyan2000/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /home/vyan2000/local/mpich2-1.0.8p1/bin/hg...not found Checking for program /home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/bin/hg...not found Checking for program /home/vyan2000/lib/hg...not found Checking for program /home/vyan2000/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /home/vyan2000/local/mpich2-1.0.8p1/bin/hg...not found Checking for program /home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/bin/hg...not found Checking for program /home/vyan2000/hg...not found ================================================================================ TEST configureCVS from config.sourceControl(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/sourceControl.py:30) TESTING: configureCVS from config.sourceControl(config/BuildSystem/config/sourceControl.py:30) Find the CVS executable Checking for program /home/vyan2000/bin/cvs...not found Checking for program /home/vyan2000/bin/cvs...not found Checking for program /usr/local/sbin/cvs...not found Checking for program /usr/local/bin/cvs...not found Checking for program /usr/sbin/cvs...not found Checking for program /usr/bin/cvs...found Defined make macro "CVS" to "cvs" ================================================================================ TEST configureSubversion from config.sourceControl(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/sourceControl.py:35) TESTING: configureSubversion from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Subversion executable Checking for program /home/vyan2000/bin/svn...not found Checking for program /home/vyan2000/bin/svn...not found Checking for program /usr/local/sbin/svn...not found Checking for program /usr/local/bin/svn...not found Checking for program /usr/sbin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /sbin/svn...not found Checking for program /bin/svn...not found Checking for program /usr/games/svn...not found Checking for program /home/vyan2000/lib/svn...not found Checking for program /home/vyan2000/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /home/vyan2000/local/mpich2-1.0.8p1/bin/svn...not found Checking for program /home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/bin/svn...not found Checking for program /home/vyan2000/lib/svn...not found Checking for program /home/vyan2000/bin/svn...not found Checking for program /usr/bin/svn...not found Checking for program /home/vyan2000/local/mpich2-1.0.8p1/bin/svn...not found Checking for program /home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/bin/svn...not found Checking for program /home/vyan2000/svn...not found ================================================================================ TEST configureDirectories from PETSc.utilities.petscdir(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/petscdir.py:37) TESTING: configureDirectories from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:37) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 0 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 5 #define PETSC_VERSION_DATE "Dec, 19, 2008" #define PETSC_VERSION_PATCH_DATE "Mon Apr 13 09:15:37 CDT 2009" #define PETSC_VERSION_HG "131aaf54d5a00500b8913c368c685dab5521f4c8" #define PETSC_VERSION_DATE_HG "Mon Apr 13 09:15:15 2009 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5" Defined "DIR" to "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5" sh: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/configarch/config.guess Executing: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/configarch/config.guess sh: i686-pc-linux-gnu sh: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/configarch/config.sub i686-pc-linux-gnu Executing: /bin/sh /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/configarch/config.sub i686-pc-linux-gnu sh: i686-pc-linux-gnu ================================================================================ TEST configureExternalPackagesDir from PETSc.utilities.petscdir(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/petscdir.py:109) TESTING: configureExternalPackagesDir from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:109) ================================================================================ TEST configureInstallationMethod from PETSc.utilities.petscdir(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/petscdir.py:116) TESTING: configureInstallationMethod from PETSc.utilities.petscdir(config/PETSc/utilities/petscdir.py:116) This is a tarball installation ================================================================================ TEST configureETags from PETSc.utilities.Etags(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/Etags.py:27) TESTING: configureETags from PETSc.utilities.Etags(config/PETSc/utilities/Etags.py:27) Determine if etags files exist and try to create otherwise Found etags file ================================================================================ TEST getDatafilespath from PETSc.utilities.dataFilesPath(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.utilities.dataFilesPath(config/PETSc/utilities/dataFilesPath.py:29) Checks what DATAFILESPATH should be Defined make macro "DATAFILESPATH" to "None" ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:1290) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1290) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST checkVendor from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:273) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:273) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:283) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:283) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:394) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:394) Locate a functional C compiler Checking for program /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py...found Defined make macro "CC" to "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:451) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:451) Locate a functional C preprocessor Checking for program /home/vyan2000/bin/cpp...not found Checking for program /home/vyan2000/bin/cpp...not found Checking for program /usr/local/sbin/cpp...not found Checking for program /usr/local/bin/cpp...not found Checking for program /usr/sbin/cpp...not found Checking for program /usr/bin/cpp...found Defined make macro "CPP" to "cpp" Pushing language C sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... st char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 832 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 867 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 883 "/usr/include/stdlib.h" 3 4 # 3 "conftest.c" 2 Popping language C ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:557) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:557) Locate a functional Cxx compiler ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:726) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:726) Locate a functional Fortran compiler ================================================================================ TEST checkPIC from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:807) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:807) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Skip checking PIC options on user request ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:836) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:836) ================================================================================ TEST checkArchiver from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:930) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:930) Check that the archiver exists and can make a library usable by the compiler Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Checking for program /home/vyan2000/bin/ar...not found Checking for program /home/vyan2000/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/vyan2000/bin/ranlib...not found Checking for program /home/vyan2000/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib -c libconf1.a Executing: /usr/bin/ranlib -c libconf1.a sh: Possible ERROR while running ranlib: ret = 256 error message = {/usr/bin/ranlib: '-c': No such file } Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Checking for program /home/vyan2000/bin/ar...not found Checking for program /home/vyan2000/bin/ar...not found Checking for program /usr/local/sbin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/sbin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /home/vyan2000/bin/ranlib...not found Checking for program /home/vyan2000/bin/ranlib...not found Checking for program /usr/local/sbin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/sbin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" sh: /usr/bin/ar cr libconf1.a conf1.o Executing: /usr/bin/ar cr libconf1.a conf1.o sh: sh: /usr/bin/ranlib libconf1.a Executing: /usr/bin/ranlib libconf1.a sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -L. -lconf1 Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -L. -lconf1 sh: Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:1037) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1037) Check that the linker can produce shared libraries Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a Executing: /usr/bin/ar cr libconftest.a conftest.o ; /usr/bin/ranlib libconftest.a sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -L. -lconftest Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -L. -lconftest sh: Using shared linker /usr/bin/ar with flags [] and library extension a sh: uname -s Executing: uname -s sh: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:1113) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1113) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C sh: uname -s Executing: uname -s sh: Linux sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -flags Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -flags sh: Trying C linker flag -Wl,-rpath, sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wl,-rpath,/home/vyan2000/local/PPETSc/petsc-3.0.0-p5 conftest.o Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wl,-rpath,/home/vyan2000/local/PPETSc/petsc-3.0.0-p5 conftest.o sh: Valid C linker flag -Wl,-rpath,/home/vyan2000/local/PPETSc/petsc-3.0.0-p5 Popping language C ================================================================================ TEST checkLibC from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:1146) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1146) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:1195) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1195) Check that the linker can produce dynamic libraries Checking for header: dlfcn.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 24 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/... ... dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 30 "/usr/include/dlfcn.h" 2 3 4 # 54 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 84 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 190 "/usr/include/dlfcn.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_DLFCN_H" to "1" Checking for functions ['dlopen', 'dlsym', 'dlclose'] in library ['dl'] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl sh: Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS sh: uname -s Executing: uname -s sh: Linux Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C sh: /usr/bin/ar -o libconftest.so conftest.o -ldl Executing: /usr/bin/ar -o libconftest.so conftest.o -ldl sh: Possible ERROR while running linker: /usr/bin/ar: no operation specified output: ret = 256 error message = {/usr/bin/ar: no operation specified } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" int foo(void) {return 0;} Checking dynamic linker /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib using flags ['-shared'] Checking for program /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py...found Defined make macro "DYNAMICLINKER" to "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -shared conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -shared conftest.o -ldl sh: Valid C linker flag -shared sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o libconftest.so -shared conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o libconftest.so -shared conftest.o -ldl sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 11: error: identifier "printf" is undefined printf("Could not load symbol\n"); ^ "conftest.c", line 15: error: identifier "printf" is undefined printf("Invalid return from foo()\n"); ^ "conftest.c", line 19: error: identifier "printf" is undefined printf("Could not close library\n"); ^ 3 errors detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("./libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Compile failed inside link Unable to find working dynamic linker ================================================================================ TEST output from config.setCompilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/setCompilers.py:1241) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1241) Output module data as defines and substitutions Substituting "CC" with "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" Substituting "CFLAGS" with "" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "cpp" Substituting "CPPFLAGS" with "" Substituting "CXX" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilerFlags.py:66) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:66) Get the default compiler flags Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --version Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --version sh: gcc (GCC) 4.2.4 (Ubuntu 4.2.4-1ubuntu3) Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib gcc (GCC) 4.2.4 (Ubuntu 4.2.4-1ubuntu3) sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --help Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nclude: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . For Debian GNU/Linux specific bug reporting instructions, please see: . Trying C compiler flag -Wall sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall conftest.c sh: Added C compiler flag -Wall Trying C compiler flag -Wwrite-strings sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings conftest.c sh: Added C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing conftest.c sh: Added C compiler flag -Wno-strict-aliasing sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --help Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nclude: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . For Debian GNU/Linux specific bug reporting instructions, please see: . Trying C compiler flag -g3 sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Added C compiler flag -g3 Popping language C ================================================================================ TEST configureDebugging from PETSc.utilities.debugging(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/debugging.py:25) TESTING: configureDebugging from PETSc.utilities.debugging(config/PETSc/utilities/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST configureArchitecture from PETSc.utilities.arch(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/arch.py:39) TESTING: configureArchitecture from PETSc.utilities.arch(config/PETSc/utilities/arch.py:39) Checks PETSC_ARCH and sets if not set Defined "ARCH" to "linux" Defined "ARCH_NAME" to ""O-hypre-prometheus-tau"" Defined make macro "PETSC_ARCH_NAME" to "O-hypre-prometheus-tau" Substituting "ARCH" with "O-hypre-prometheus-tau" ================================================================================ TEST configureBmakeDir from PETSc.utilities.bmakeDir(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/bmakeDir.py:26) TESTING: configureBmakeDir from PETSc.utilities.bmakeDir(config/PETSc/utilities/bmakeDir.py:26) Makes $PETSC_ARCH and subdirectories if it does not exist Changed persistence directory to O-hypre-prometheus-tau/conf ================================================================================ TEST configureSharedLibraries from PETSc.utilities.sharedLibraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/sharedLibraries.py:41) TESTING: configureSharedLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:41) Checks whether dynamic libraries should be used, for which you must - Specify --with-shared - Have found a working dynamic linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.utilities.sharedLibraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/sharedLibraries.py:64) TESTING: configureDynamicLibraries from PETSc.utilities.sharedLibraries(config/PETSc/utilities/sharedLibraries.py:64) Checks whether dynamic libraries should be used, for which you must - Specify --with-dynamic - Have found a working dynamic linker (with dlfcn.h and libdl) Defines PETSC_USE_DYNAMIC_LIBRARIES if they are used Dynamic libraries - disabled sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --help Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib --help sh: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options (Use '-v --help' to display command line options of sub-processes) -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-... ... nclude: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . For Debian GNU/Linux specific bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilers.py:134) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:134) Check for the C/CXX restrict keyword Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c: In function ‘main’: conftest.inst.c:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘x’ conftest.inst.c:17: error: ‘x’ undeclared (first use in this function) conftest.inst.c:17: error: (Each undeclared identifier is reported only once conftest.inst.c:17: error: for each function it appears in.) } Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 5: error: expected a ";" float * __restrict__ x;; ^ 1 error detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:17: warning: unused variable ‘x’ compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilers.py:276) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:276) Activate format string checking if using the GNU compilers compilers: Added gcc printf format checking Defined "PRINTF_FORMAT_CHECK(A,B)" to "__attribute__((format (printf, A, B)))" ================================================================================ TEST checkCStaticInline from config.compilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilers.py:105) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:105) Check for C keyword: static inline Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:32: warning: unused variable ‘i’ compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilers.py:286) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:286) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does ================================================================================ TEST checkCLibraries from config.compilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilers.py:161) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:161) Determines the libraries needed to link with C Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: gcc -o conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s Using built-in specs. Target: i486-linux-gnu Configured with: ../src/configure -v --enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2 --enable-clocale=gnu --enable-libstdcxx-... ... ../lib/crti.o /usr/lib/gcc/i486-linux-gnu/4.2.4/crtbegin.o -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -L/usr/lib/gcc/i486-linux-gnu/4.2.4 -L/usr/lib/gcc/i486-linux-gnu/4.2.4 -L/usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i486-linux-gnu/4.2.4/../../.. conftest.o -ldl -ltau-mpi-pdt -lbfd -liberty -lstdc++ -lgcc_s -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/i486-linux-gnu/4.2.4/crtend.o /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crtn.o Popping language C compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wwrite-strings compilers: Unknown arg -Wwrite-strings compilers: Checking arg -Wno-strict-aliasing compilers: Unknown arg -Wno-strict-aliasing compilers: Checking arg -g3 compilers: Unknown arg -g3 compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib compilers: Found library directory: -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib compilers: Checking arg -ltau-mpi-pdt compilers: Found library : -ltau-mpi-pdt compilers: Checking arg -lbfd compilers: Found library : -lbfd compilers: Checking arg -liberty compilers: Found library : -liberty compilers: Checking arg -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ compilers: Found library directory: -L/usr/lib/gcc/i486-linux-gnu/4.2.4 compilers: Checking arg -lstdc++ compilers: Found library : -lstdc++ compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg i486-linux-gnu compilers: Unknown arg i486-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --enable-languages=c,c++,fortran,objc,obj-c++,treelang compilers: Unknown arg --enable-languages=c,c++,fortran,objc,obj-c++,treelang compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-gxx-include-dir=/usr/include/c++/4.2 compilers: Unknown arg --with-gxx-include-dir=/usr/include/c++/4.2 compilers: Checking arg --program-suffix=-4.2 compilers: Unknown arg --program-suffix=-4.2 compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-objc-gc compilers: Unknown arg --enable-objc-gc compilers: Checking arg --enable-mpfr compilers: Unknown arg --enable-mpfr compilers: Checking arg --enable-targets=all compilers: Unknown arg --enable-targets=all compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=i486-linux-gnu compilers: Unknown arg --build=i486-linux-gnu compilers: Checking arg --host=i486-linux-gnu compilers: Unknown arg --host=i486-linux-gnu compilers: Checking arg --target=i486-linux-gnu compilers: Unknown arg --target=i486-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.2.4 compilers: Unknown arg 4.2.4 compilers: Checking arg (Ubuntu compilers: Unknown arg (Ubuntu compilers: Checking arg 4.2.4-1ubuntu3) compilers: Unknown arg 4.2.4-1ubuntu3) compilers: Checking arg /usr/lib/gcc/i486-linux-gnu/4.2.4/collect2 compilers: Unknown arg /usr/lib/gcc/i486-linux-gnu/4.2.4/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_i386 compilers: Unknown arg elf_i386 compilers: Checking arg --hash-style=both compilers: Unknown arg --hash-style=both compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib/ld-linux.so.2 compilers: Unknown arg /lib/ld-linux.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg conftest compilers: Unknown arg conftest compilers: Checking arg /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crt1.o compilers: Unknown arg /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crt1.o compilers: Checking arg /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crti.o compilers: Unknown arg /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crti.o compilers: Checking arg /usr/lib/gcc/i486-linux-gnu/4.2.4/crtbegin.o compilers: Unknown arg /usr/lib/gcc/i486-linux-gnu/4.2.4/crtbegin.o compilers: Checking arg -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib compilers: Found library directory: -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib compilers: Checking arg -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ compilers: Found library directory: -L/usr/lib/gcc/i486-linux-gnu/4.2.4 compilers: Checking arg -L/usr/lib/gcc/i486-linux-gnu/4.2.4 compilers: Found library directory: -L/usr/lib/gcc/i486-linux-gnu/4.2.4 compilers: Checking arg -L/usr/lib/gcc/i486-linux-gnu/4.2.4 compilers: Found library directory: -L/usr/lib/gcc/i486-linux-gnu/4.2.4 compilers: Checking arg -L/usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib compilers: Checking arg -L/lib/../lib compilers: Found library directory: -L/lib compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/i486-linux-gnu/4.2.4/../../.. compilers: Checking arg conftest.o compilers: Unknown arg conftest.o compilers: Checking arg -ldl compilers: Checking arg -ltau-mpi-pdt compilers: Checking arg -lbfd compilers: Checking arg -liberty compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Checking arg -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/i486-linux-gnu/4.2.4/crtend.o compilers: Unknown arg /usr/lib/gcc/i486-linux-gnu/4.2.4/crtend.o compilers: Checking arg /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crtn.o compilers: Unknown arg /usr/lib/gcc/i486-linux-gnu/4.2.4/../../../../lib/crtn.o compilers: Libraries needed to link C code with another linker: ['-ldl', '-L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib', '-ltau-mpi-pdt', '-lbfd', '-liberty', '-L/usr/lib/gcc/i486-linux-gnu/4.2.4', '-lstdc++', '-lgcc_s', '-L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib', '-L/usr/lib/gcc/i486-linux-gnu/4.2.4', '-L/usr/lib/gcc/i486-linux-gnu/4.2.4', '-L/usr/lib/gcc/i486-linux-gnu/4.2.4', '-L/lib'] ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/compilers.py:1177) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1177) ================================================================================ TEST configureLibrary from PETSc.packages.Mathematica(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/packages/Mathematica.py:15) TESTING: configureLibrary from PETSc.packages.Mathematica(config/PETSc/packages/Mathematica.py:15) Find a Mathematica installation and check if it can work with PETSc ================================================================================ TEST configureFortranCPP from PETSc.utilities.fortranCPP(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/fortranCPP.py:28) TESTING: configureFortranCPP from PETSc.utilities.fortranCPP(config/PETSc/utilities/fortranCPP.py:28) Handle case where Fortran cannot preprocess properly Defined make rule ".F.o" with dependencies "" and code ['-@echo "Your system was not configured for Fortran use"', '-@echo " Check configure.log under the checkFortranCompiler test for the specific failure"', '-@echo " You can reconfigure using --with-fc= to enable Fortran"'] ================================================================================ TEST checkStdC from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:76) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:76) sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 26 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... ng.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 354 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 432 "/usr/include/string.h" 3 4 # 3 "conftest.c" 2 sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... st char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 832 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 867 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 883 "/usr/include/stdlib.h" 3 4 # 3 "conftest.c" 2 sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:109) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:109) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # ... ... __ver, int __fildes, __const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))); # 440 "/usr/include/sys/stat.h" 3 4 extern int __xmknod (int __ver, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 5))); # 532 "/usr/include/sys/stat.h" 3 4 # 6 "conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:144) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:144) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:166) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:166) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/in... ... truct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 416 "/usr/include/time.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 23 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 ... ... titimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 191 "/usr/include/sys/time.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_TIME_H" to "1" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:174) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:174) Checks for the math headers and defines Checking for header: math.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 28 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/in... ... _ ((__nothrow__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); # 142 "/usr/include/math.h" 2 3 4 # 157 "/usr/include/math.h" 3 4 extern int signgam; # 284 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 309 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 465 "/usr/include/math.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_MATH_H" to "1" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: error: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: error: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... ys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-32.h" 1 3 4 # 8 "/usr/include/gnu/stubs.h" 2 3 4 # 355 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 27 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/... ... n (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 130 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 159 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 176 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__)); # 198 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 220 "/usr/include/fcntl.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/float.h" 1 3 4 # 3 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:16: error: io.h: No such file or directory ret = 256 error message = {conftest.c:3:16: error: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3... ... ix1_lim.h" 1 3 4 # 153 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 36 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 37 "/usr/include/bits/local_lim.h" 2 3 4 # 154 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 24 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... void *malloc_get_state (void) __attribute__ ((__nothrow__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__)); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void *__ptr, __const void *); extern void *(*__malloc_hook) (size_t __size, __const void *); extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *); extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/incl... ... t passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... r_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 27 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/... ... ute__ ((__nothrow__)); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); # 3 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... /include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ; # 990 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__)); # 1011 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__)); # 1034 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1065 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1103 "/usr/include/unistd.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: error: machine/endian.h: No such file or directory ret = 256 error message = {conftest.c:3:28: error: machine/endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 22 "/usr/include/sys/param.h" 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" ... ... unsigned int __nr_writers_queued; unsigned char __flags; unsigned char __shared; unsigned char __pad1; unsigned char __pad2; int __writer; } __data; char __size[32]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[20]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/sys/param.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 31 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 ... ... pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 22 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 ... ... rce, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 70 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 88 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: error: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: error: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 26 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # ... ... typedef unsigned long int __fsfilcnt_t; __extension__ typedef __u_quad_t __fsfilcnt64_t; __extension__ typedef int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 58 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 26 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 ... ... 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-32.h" 1 3 4 # 8 "/usr/include/gnu/stubs.h" 2 3 4 # 355 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 4 # 49 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 26 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... ng.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 354 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 432 "/usr/include/string.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... st char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 832 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 867 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 883 "/usr/include/stdlib.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/memory.h" 1 3 4 # 26 "/usr/include/memory.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 354 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 432 "/usr/include/string.h" 3 4 # 31 "/usr/include/memory.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 24 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 ... ... __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 210 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 241 "/usr/include/sys/socket.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 27 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 ... ... o.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 # 144 "/usr/include/sys/wait.h" 2 3 4 # 155 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 ... ... # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 364 "/usr/include/netinet/in.h" 2 3 4 # 426 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 454 "/usr/include/netinet/in.h" 3 4 struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 549 "/usr/include/netinet/in.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/... ... tern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 682 "/usr/include/netdb.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/in... ... truct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 416 "/usr/include/time.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: error: Ws2tcpip.h: No such file or directory ret = 256 error message = {conftest.c:3:22: error: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # ... ... unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; unsigned char __flags; unsigned char __shared; unsigned char __pad1; unsigned char __pad2; int __writer; } __data; char __size[32]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[20]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: error: WindowsX.h: No such file or directory ret = 256 error message = {conftest.c:3:22: error: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: cxxabi.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: cxxabi.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: error: float.h.h: No such file or directory ret = 256 error message = {conftest.c:3:21: error: float.h.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: ieeefp.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: ieeefp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:17: error: dos.h: No such file or directory ret = 256 error message = {conftest.c:3:17: error: dos.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... ys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-32.h" 1 3 4 # 8 "/usr/include/gnu/stubs.h" 2 3 4 # 355 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 27 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/... ... n (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 130 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 159 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 176 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__)); # 198 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 220 "/usr/include/fcntl.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/float.h" 1 3 4 # 3 "conftest.c" 2 Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:16: error: io.h: No such file or directory ret = 256 error message = {conftest.c:3:16: error: io.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3... ... ix1_lim.h" 1 3 4 # 153 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 36 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 37 "/usr/include/bits/local_lim.h" 2 3 4 # 154 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 123 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 2 3 4 # 8 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/syslimits.h" 2 3 4 # 12 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 24 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... void *malloc_get_state (void) __attribute__ ((__nothrow__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__)); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void *__ptr, __const void *); extern void *(*__malloc_hook) (size_t __size, __const void *); extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *); extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/incl... ... t passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... r_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "conftest.c" 2 Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 27 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/... ... ute__ ((__nothrow__)); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const)); extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); # 3 "conftest.c" 2 Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... /include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ; # 990 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__)); # 1011 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__)); # 1034 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1065 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1103 "/usr/include/unistd.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: error: machine/endian.h: No such file or directory ret = 256 error message = {conftest.c:3:28: error: machine/endian.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 22 "/usr/include/sys/param.h" 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 11 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 1 3 4 # 122 "/usr/lib/gcc/i486-linux-gnu/4.2.4/include/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" ... ... unsigned int __nr_writers_queued; unsigned char __flags; unsigned char __shared; unsigned char __pad1; unsigned char __pad2; int __writer; } __data; char __size[32]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[20]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 43 "/usr/include/sys/param.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 31 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 ... ... pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned short int pr_uid; unsigned short int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "conftest.c" 2 Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 22 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 ... ... rce, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 70 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 88 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: error: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: error: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 26 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # ... ... typedef unsigned long int __fsfilcnt_t; __extension__ typedef __u_quad_t __fsfilcnt64_t; __extension__ typedef int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; __extension__ typedef int __intptr_t; __extension__ typedef unsigned int __socklen_t; # 58 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 26 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 ... ... 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-32.h" 1 3 4 # 8 "/usr/include/gnu/stubs.h" 2 3 4 # 355 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 4 # 49 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 26 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... ng.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 354 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 432 "/usr/include/string.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... st char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 832 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 867 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 883 "/usr/include/stdlib.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: memory.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/memory.h" 1 3 4 # 26 "/usr/include/memory.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/us... ... const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 354 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 432 "/usr/include/string.h" 3 4 # 31 "/usr/include/memory.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_MEMORY_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 24 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 ... ... __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 210 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 241 "/usr/include/sys/socket.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 27 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 ... ... o.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 # 144 "/usr/include/sys/wait.h" 2 3 4 # 155 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 ... ... # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 364 "/usr/include/netinet/in.h" 2 3 4 # 426 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 454 "/usr/include/netinet/in.h" 3 4 struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 549 "/usr/include/netinet/in.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/... ... tern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 682 "/usr/include/netdb.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: Direct.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: Direct.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/in... ... truct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 416 "/usr/include/time.h" 3 4 # 3 "conftest.c" 2 Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: error: Ws2tcpip.h: No such file or directory ret = 256 error message = {conftest.c:3:22: error: Ws2tcpip.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 27 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # ... ... unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; unsigned char __flags; unsigned char __shared; unsigned char __pad1; unsigned char __pad2; int __writer; } __data; char __size[32]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[20]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 3 "conftest.c" 2 Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:22: error: WindowsX.h: No such file or directory ret = 256 error message = {conftest.c:3:22: error: WindowsX.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: cxxabi.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: cxxabi.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:21: error: float.h.h: No such file or directory ret = 256 error message = {conftest.c:3:21: error: float.h.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST check from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:54) TESTING: check from config.headers(config/BuildSystem/config/headers.py:54) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: ieeefp.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: ieeefp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkRecursiveMacros from config.headers(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/headers.py:189) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:189) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST checkMemcmp from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:79) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:79) Check for 8-bit clean memcmp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: ================================================================================ TEST checkSysinfo from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:102) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:102) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for function sysinfo sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 10 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 3... ... # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 10 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 3 "conftest.c" 2 Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 330 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 348 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 349 "/usr/include/sys/cdefs.h" 2 3 4 # 331 "/usr/include/features.h" 2 3 4 # 354 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 ... ... g totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 26 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 3 "conftest.c" 2 Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:28: error: sys/systeminfo.h: No such file or directory ret = 256 error message = {conftest.c:3:28: error: sys/systeminfo.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 13: catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ 1 catastrophic error detected in the compilation of "conftest.c". Compilation terminated. } Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:125) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:125) Checking for function vprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘vprintf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_VPRINTF" to "1" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: ================================================================================ TEST checkVFPrintf from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:132) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:132) Checking for function vfprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘vfprintf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_VFPRINTF" to "1" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: ================================================================================ TEST checkVSNPrintf from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:139) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:139) Checking for function _vsnprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_vsnprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_vsnprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _vsnprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) choke me #else _vsnprintf(); #endif ; return 0; } Checking for function vsnprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘vsnprintf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_VSNPRINTF" to "1" sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: ================================================================================ TEST checkFreeReturnType from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:157) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:157) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 6: error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ 1 error detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:163) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:163) Checks whether the variable argument list functionality is working sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 7: error: identifier "va_copy" is undefined va_copy(l1, l2); ^ 1 error detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Compile failed inside link sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 7: error: identifier "__va_copy" is undefined __va_copy(l1, l2); ^ 1 error detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; __va_copy(l1, l2); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getpagesize’ /usr/include/unistd.h:938: error: previous declaration of ‘getpagesize’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘access’ /usr/include/unistd.h:258: error: previous declaration of ‘access’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_access) || defined (__stub___access) choke me #else access(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_access' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_access' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getcwd’ /usr/include/unistd.h:471: error: previous declaration of ‘getcwd’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_getcwd' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_getcwd' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getdomainname’ /usr/include/unistd.h:864: error: previous declaration of ‘getdomainname’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getdomainname) || defined (__stub___getdomainname) choke me #else getdomainname(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘gethostname’ /usr/include/unistd.h:845: error: previous declaration of ‘gethostname’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostname) || defined (__stub___gethostname) choke me #else gethostname(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getwd’ /usr/include/unistd.h:485: error: previous declaration of ‘getwd’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘memmove’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getpagesize’ /usr/include/unistd.h:938: error: previous declaration of ‘getpagesize’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘readlink’ /usr/include/unistd.h:777: error: previous declaration of ‘readlink’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_readlink) || defined (__stub___readlink) choke me #else readlink(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘sleep’ /usr/include/unistd.h:405: error: previous declaration of ‘sleep’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sleep) || defined (__stub___sleep) choke me #else sleep(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_sleep' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_sleep' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘snprintf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_snprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_snprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘lseek’ /usr/include/unistd.h:301: error: previous declaration of ‘lseek’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_lseek) || defined (__stub___lseek) choke me #else lseek(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_lseek' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_lseek' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘tau_fork’ /home/vyan2000/local/TAU/tau-2.18.2p2/include/Profile/Profiler.h:38: error: previous declaration of ‘tau_fork’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_fork) || defined (__stub___fork) choke me #else fork(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function strcasecmp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘strcasecmp’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_STRCASECMP" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘bzero’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlopen sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLOPEN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlsym sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLSYM" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlclose sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLCLOSE" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function isinf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘isinf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_ISINF" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function isnan sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘isnan’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_ISNAN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _finite sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_finite' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_finite' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _finite(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _finite(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__finite) || defined (__stub____finite) choke me #else _finite(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _isnan sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_isnan' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_isnan' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _isnan(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _isnan(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__isnan) || defined (__stub____isnan) choke me #else _isnan(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function access sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘access’ /usr/include/unistd.h:258: error: previous declaration of ‘access’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_access) || defined (__stub___access) choke me #else access(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _access sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_access' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_access' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _access(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__access) || defined (__stub____access) choke me #else _access(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function clock sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_CLOCK" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function drand48 sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DRAND48" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getcwd sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getcwd’ /usr/include/unistd.h:471: error: previous declaration of ‘getcwd’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getcwd) || defined (__stub___getcwd) choke me #else getcwd(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _getcwd sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_getcwd' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_getcwd' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _getcwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__getcwd) || defined (__stub____getcwd) choke me #else _getcwd(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getdomainname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getdomainname’ /usr/include/unistd.h:864: error: previous declaration of ‘getdomainname’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getdomainname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getdomainname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getdomainname) || defined (__stub___getdomainname) choke me #else getdomainname(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘gethostname’ /usr/include/unistd.h:845: error: previous declaration of ‘gethostname’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char gethostname(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostname(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_gethostname) || defined (__stub___gethostname) choke me #else gethostname(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpwuid sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETPWUID" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gettimeofday sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETTIMEOFDAY" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getwd sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getwd’ /usr/include/unistd.h:485: error: previous declaration of ‘getwd’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getwd(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getwd) || defined (__stub___getwd) choke me #else getwd(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memalign sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_MEMALIGN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function memmove sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘memmove’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_MEMMOVE" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function mkstemp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_MKSTEMP" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function popen sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_POPEN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function PXFGETARG sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function rand sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_RAND" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getpagesize’ /usr/include/unistd.h:938: error: previous declaration of ‘getpagesize’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function readlink sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘readlink’ /usr/include/unistd.h:777: error: previous declaration of ‘readlink’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char readlink(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char readlink(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_readlink) || defined (__stub___readlink) choke me #else readlink(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function realpath sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_REALPATH" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigaction sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SIGACTION" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function signal sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SIGNAL" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sigset sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SIGSET" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sleep sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘sleep’ /usr/include/unistd.h:405: error: previous declaration of ‘sleep’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sleep) || defined (__stub___sleep) choke me #else sleep(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _sleep sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_sleep' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_sleep' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _sleep(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__sleep) || defined (__stub____sleep) choke me #else _sleep(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function socket sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SOCKET" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function times sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_TIMES" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function gethostbyname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETHOSTBYNAME" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function uname sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_UNAME" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function snprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘snprintf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_SNPRINTF" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _snprintf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_snprintf' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_snprintf' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _snprintf(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__snprintf) || defined (__stub____snprintf) choke me #else _snprintf(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _fullpath sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_fullpath' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_fullpath' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _fullpath(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _fullpath(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__fullpath) || defined (__stub____fullpath) choke me #else _fullpath(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function lseek sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘lseek’ /usr/include/unistd.h:301: error: previous declaration of ‘lseek’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_lseek) || defined (__stub___lseek) choke me #else lseek(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _lseek sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_lseek' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_lseek' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _lseek(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__lseek) || defined (__stub____lseek) choke me #else _lseek(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function time sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_TIME" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function fork sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘tau_fork’ /home/vyan2000/local/TAU/tau-2.18.2p2/include/Profile/Profiler.h:38: error: previous declaration of ‘tau_fork’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char fork(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char fork(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_fork) || defined (__stub___fork) choke me #else fork(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function stricmp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `stricmp' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `stricmp' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char stricmp(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_stricmp) || defined (__stub___stricmp) choke me #else stricmp(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function strcasecmp sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘strcasecmp’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_STRCASECMP" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function bzero sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘bzero’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_BZERO" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlopen sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLOPEN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlsym sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLSYM" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlclose sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLCLOSE" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function dlerror sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_DLERROR" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memcpy sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memcpy' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memcpy(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memcpy(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memcpy) || defined (__stub____intel_fast_memcpy) choke me #else _intel_fast_memcpy(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _intel_fast_memset sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _intel_fast_memset(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _intel_fast_memset(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__intel_fast_memset) || defined (__stub____intel_fast_memset) choke me #else _intel_fast_memset(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function isinf sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘isinf’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_ISINF" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function isnan sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c:11: warning: conflicting types for built-in function ‘isnan’ Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_ISNAN" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _finite sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_finite' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_finite' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _finite(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _finite(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__finite) || defined (__stub____finite) choke me #else _finite(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function _isnan sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_isnan' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_isnan' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _isnan(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _isnan(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__isnan) || defined (__stub____isnan) choke me #else _isnan(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getrusage sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Defined "HAVE_GETRUSAGE" to "1" ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function sbreak sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `sbreak' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `sbreak' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char sbreak(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_sbreak) || defined (__stub___sbreak) choke me #else sbreak(); #endif ; return 0; } ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function getpagesize sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:11: error: conflicting types for ‘getpagesize’ /usr/include/unistd.h:938: error: previous declaration of ‘getpagesize’ was here } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char getpagesize(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_getpagesize) || defined (__stub___getpagesize) choke me #else getpagesize(); #endif ; return 0; } Compile failed inside link ================================================================================ TEST check from config.functions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/functions.py:30) TESTING: check from config.functions(config/BuildSystem/config/functions.py:30) Checks for the function "funcName", and if found defines HAVE_"funcName" Checking for function task_info sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `task_info' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `task_info' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char task_info(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char task_info(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_task_info) || defined (__stub___task_info) choke me #else task_info(); #endif ; return 0; } ================================================================================ TEST configureMemorySize from PETSc.utilities.getResidentSetSize(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/getResidentSetSize.py:32) TESTING: configureMemorySize from PETSc.utilities.getResidentSetSize(config/PETSc/utilities/getResidentSetSize.py:32) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFortranCommandLine from PETSc.utilities.fortranCommandLine(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/fortranCommandLine.py:26) TESTING: configureFortranCommandLine from PETSc.utilities.fortranCommandLine(config/PETSc/utilities/fortranCommandLine.py:26) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Checking for function _gfortran_iargc sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_gfortran_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `_gfortran_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char _gfortran_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) choke me #else _gfortran_iargc(); #endif ; return 0; } Checking for function ipxfargc_ sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `ipxfargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `ipxfargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char ipxfargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) choke me #else ipxfargc_(); #endif ; return 0; } Checking for function f90_unix_MP_iargc sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `f90_unix_MP_iargc' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `f90_unix_MP_iargc' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char f90_unix_MP_iargc(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) choke me #else f90_unix_MP_iargc(); #endif ; return 0; } Checking for function PXFGETARG sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `PXFGETARG' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char PXFGETARG(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) choke me #else PXFGETARG(); #endif ; return 0; } Checking for function iargc_ sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `iargc_' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:32: undefined reference to `iargc_' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char iargc_(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_iargc_) || defined (__stub___iargc_) choke me #else iargc_(); #endif ; return 0; } Checking for function GETARG@16 sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 10: error: unrecognized token char GETARG@16(); ^ "conftest.c", line 10: error: expected a ";" char GETARG@16(); ^ "conftest.c", line 17: error: unrecognized token #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "conftest.c", line 17: error: expected a ")" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "conftest.c", line 17: error: extra text after expected end of preprocessing directive #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ "conftest.c", line 20: error: unrecognized token GETARG@16(); ^ "conftest.c", line 20: error: expected a ";" GETARG@16(); ^ 7 errors detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully few prototypes, which can conflict with char GETARG@16(); below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); int main() { /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) choke me #else GETARG@16(); #endif ; return 0; } Compile failed inside link Popping language C ================================================================================ TEST configureFPTrap from PETSc.utilities.FPTrap(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/FPTrap.py:27) TESTING: configureFPTrap from PETSc.utilities.FPTrap(config/PETSc/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:20: error: sigfpe.h: No such file or directory ret = 256 error message = {conftest.c:3:20: error: sigfpe.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: fpxcp.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:19: error: fpxcp.h: No such file or directory ret = 256 error message = {conftest.c:3:19: error: fpxcp.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include Checking for header: floatingpoint.h sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 Possible ERROR while running preprocessor: conftest.c:3:27: error: floatingpoint.h: No such file or directory ret = 256 error message = {conftest.c:3:27: error: floatingpoint.h: No such file or directory } Source: #include "confdefs.h" #include "conffix.h" #include ================================================================================ TEST checkSizeTypes from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:44) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:44) Checks for types associated with sizes, such as size_t. Checking for type: size_t sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:24: warning: unused variable ‘a’ size_t found ================================================================================ TEST checkFileTypes from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:54) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:54) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:24: warning: unused variable ‘a’ mode_t found Checking for type: off_t sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:24: warning: unused variable ‘a’ off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:49) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:49) Checks for types associated with integers, such as int32_t. Checking for type: int32_t sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:24: warning: unused variable ‘a’ int32_t found ================================================================================ TEST checkPID from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:60) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:60) Checks for pid_t, and defines it if necessary Checking for type: pid_t sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:24: warning: unused variable ‘a’ pid_t found ================================================================================ TEST checkUID from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:64) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:64) Checks for uid_t and gid_t, and defines them if necessary sh: cpp conftest.c Executing: cpp conftest.c sh: # 1 "conftest.c" # 1 "" # 1 "" # 1 "conftest.c" # 1 "confdefs.h" 1 # 2 "conftest.c" 2 # 1 "conffix.h" 1 # 3 "conftest.c" 2 sys/types.h ================================================================================ TEST checkSignal from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:71) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:71) Checks the return type of signal() and defines RETSIGTYPE to that type name sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:92) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:92) Check for complex numbers in in C99 std sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 6: error: expected a ";" double complex x; ^ "conftest.c", line 7: error: identifier "x" is undefined x = I; ^ "conftest.c", line 7: error: identifier "I" is undefined x = I; ^ 3 errors detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" #include int main() { double complex x; x = I; ; return 0; } Compile failed inside link ================================================================================ TEST checkConst from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:142) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:142) Checks for working const, and if not found defines it to empty string sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 7: error: const variable "x" requires an initializer typedef int charset[2]; const charset x; ^ 1 error detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } Defined "const" to "" ================================================================================ TEST checkEndian from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:198) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:198) If the machine is big endian, defines WORDS_BIGENDIAN sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run /home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse conftest.c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: "conftest.c", line 11: error: identifier "not" is undefined not big endian ^ "conftest.c", line 11: error: expected a ";" not big endian ^ 2 errors detected in the compilation of "conftest.c". } Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_VOID_P" to "4" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG" to "4" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:251) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:251) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Popping language C Defined "SIZEOF_SIZE_T" to "4" ================================================================================ TEST checkBitsPerByte from config.types(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/types.py:293) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:293) Determine the nubmer of bits per byte and define BITS_PER_BYTE sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Executing: ./conftest sh: ./conftest Executing: ./conftest sh: Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST configureScalarType from PETSc.utilities.scalarTypes(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/scalarTypes.py:32) TESTING: configureScalarType from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:32) Choose between real and complex numbers Scalar type is real ================================================================================ TEST configurePrecision from PETSc.utilities.scalarTypes(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/scalarTypes.py:48) TESTING: configurePrecision from PETSc.utilities.scalarTypes(config/PETSc/utilities/scalarTypes.py:48) Set the default real number precision for PETSc objects Precision is double ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['socket'] in library ['socket', 'nsl'] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lsocket collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lsocket -lnsl -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); int main() { socket() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['handle_sigfpes'] in library ['fpe'] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -lfpe collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lfpe -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); int main() { handle_sigfpes() ; return 0; } Popping language C ================================================================================ TEST checkMath from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:201) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:201) Check for sin() in libm, the math library Checking for functions ['sin', 'floor', 'log10', 'pow'] in library [''] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:19: warning: statement with no effect Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Popping language C Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:19: warning: statement with no effect Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Popping language C Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Popping language C Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:217) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:217) Check for erf() in libm, the math library Checking for functions ['erf'] in library [] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:19: warning: statement with no effect Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkDynamic from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:226) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:226) Check for the header and libraries necessary for dynamic library manipulation ================================================================================ TEST configureMissingDefines from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:35) TESTING: configureMissingDefines from PETSc.utilities.missing(config/PETSc/utilities/missing.py:35) Checks for limits sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingUtypeTypedefs from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:45) TESTING: configureMissingUtypeTypedefs from PETSc.utilities.missing(config/PETSc/utilities/missing.py:45) Checks if u_short is undefined sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:18: warning: unused variable ‘foo’ ================================================================================ TEST configureMissingFunctions from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:51) TESTING: configureMissingFunctions from PETSc.utilities.missing(config/PETSc/utilities/missing.py:51) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:71) TESTING: configureMissingSignals from PETSc.utilities.missing(config/PETSc/utilities/missing.py:71) Check for missing signals, and define MISSING_ if necessary sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingGetdomainnamePrototype from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:88) TESTING: configureMissingGetdomainnamePrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:88) sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: conftest.inst.c: In function ‘main’: conftest.inst.c:26: warning: unused variable ‘err’ ================================================================================ TEST configureMissingSrandPrototype from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:110) TESTING: configureMissingSrandPrototype from PETSc.utilities.missing(config/PETSc/utilities/missing.py:110) sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: ================================================================================ TEST configureMissingIntelFastPrototypes from PETSc.utilities.missing(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/missing.py:134) TESTING: configureMissingIntelFastPrototypes from PETSc.utilities.missing(config/PETSc/utilities/missing.py:134) ================================================================================ TEST configureTimers from PETSc.utilities.timer(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/timer.py:35) TESTING: configureTimers from PETSc.utilities.timer(config/PETSc/utilities/timer.py:35) Sets PETSC_HAVE_FAST_MPI_WTIME PETSC_USE_READ_REAL_TIME PETSC_USE_GETCLOCK PETSC_USE_DCLOCK PETSC_USE_NT_TIME. Checking for functions ['MPI_CRAY_barrier'] in library [''] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:19: undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:19: undefined reference to `MPI_CRAY_barrier' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_CRAY_barrier(); int main() { MPI_CRAY_barrier() ; return 0; } Popping language C Cray-MPI test failure ================================================================================ TEST configureLibraryOptions from PETSc.utilities.libraryOptions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/libraryOptions.py:46) TESTING: configureLibraryOptions from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:46) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Checking for functions ['bgl_perfctr_void'] in library [''] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:19: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: conftest.o: In function `main': /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/conftest.inst.c:19: undefined reference to `bgl_perfctr_void' collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); int main() { bgl_perfctr_void() ; return 0; } Popping language C BGL/IBM test failure ================================================================================ TEST configureISColorValueType from PETSc.utilities.libraryOptions(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/PETSc/utilities/libraryOptions.py:98) TESTING: configureISColorValueType from PETSc.utilities.libraryOptions(config/PETSc/utilities/libraryOptions.py:98) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/MPI.py:679) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:679) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['timer_create'] in library ['rt'] [] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lrt -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -lrt -ldl sh: Defined "HAVE_LIBRT" to "1" Popping language C ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['aio_read'] in library ['aio'] ['librt.a'] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Pushing language C Popping language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -laio -lrt -ldl Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -laio -lrt -ldl sh: Possible ERROR while running linker: ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -laio -lrt -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -laio collect2: ld returned 1 exit status output: ret = 256 error message = {ERROR: Unable to run gcc -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -laio -lrt -ldl -L/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -ltau-mpi-pdt -lbfd -liberty -L/usr/lib/gcc/i486-linux-gnu/4.2.4/ -lstdc++ -lgcc_s: /usr/bin/ld: cannot find -laio collect2: ld returned 1 exit status } Pushing language C Popping language C in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -o conftest -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.o -laio -lrt -ldl Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char aio_read(); int main() { aio_read() ; return 0; } Popping language C ================================================================================ TEST check from config.libraries(/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/libraries.py:126) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:126) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions ['exit'] in library ['nsl'] ['librt.a'] Pushing language C sh: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c Executing: /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib -c -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 conftest.c sh: Possible ERROR while running compiler: ret = 256 error message = {ERROR: Unable to run gcc -c conftest.inst.c -o conftest.o -o conftest.o -Wall -Wwrite-strings -Wno-strict-aliasing -g3 -DPROFILING_ON -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -DTAU_MPI -DTAU_MPI_THREADED -DTAU_LINUX_TIMERS -DCPU_TIME -DTAU_MPIGREQUEST -DTAU_MPIDATAREP -DTAU_MPIERRHANDLER -DTAU_MPIATTRFUNCTION -DTAU_MPITYPEEX -DTAU_MPIADDERROR -DTAU_LARGEFILE -D_LARGEFILE64_SOURCE -DMPICH_IGNORE_CXX_SEEK -DTAU_MPICH2_MPI_IN_PLACE -DTAU_BFD -DTAU_MPIFILE -I/home/vyan2000/local/TAU/tau-2.18.2p2/include: conftest.inst.c:5: warning: conflicting types for built-in function ‘exit’ conftest.inst.c: In function ‘main’: conftest.inst.c:19: error: expected expression before ‘)’ token } Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char exit(); int main() { exit() ; return 0; } Compile failed inside link Popping language C ================================================================================== Checking for a functional MPI sh: uname -s Executing: uname -s sh: Linux Found a copy of MPI in mpich2-1.0.8 Found a copy of MPI in mpich2-1.0.8 Pushing language C Popping language C Unable to find old configure arguments in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau/conf/mpich Have to rebuild MPICH oldargs = new args = --prefix=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau CC="/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" CFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -g3 " --disable-cxx --disable-f77 --disable-f90 --without-mpe --with-pm=gforker --enable-g=meminit --enable-fast ================================================================================= Running configure on MPICH; this may take several minutes ================================================================================= sh: cd /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8;./configure --prefix=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau CC="/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" CFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -g3 " --disable-cxx --disable-f77 --disable-f90 --without-mpe --with-pm=gforker --enable-g=meminit --enable-fast Executing: cd /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8;./configure --prefix=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau CC="/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" CFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -g3 " --disable-cxx --disable-f77 --disable-f90 --without-mpe --with-pm=gforker --enable-g=meminit --enable-fast sh: Configuring MPICH2 version 1.0.8 with '--prefix=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau' 'CC=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib' 'CFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -g3 ' '--disable-cxx' '--disable-f77' '--disable-f90' '--without-mpe' '--with-pm=gforker' '--enable-g=meminit' '--enable-fast' Running on system: Linux vyan2000-linux 2.6.24-24-generic #1 SMP Wed Apr 15 15:54:25 UTC 2009 i686 GN... ... ocal/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8/src/mpid/ch3/channels/sock sourcing /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8/src/pm/gforker/mpich2prereq checking for gcc... /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... ********************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): --------------------------------------------------------------------------------------- Error running configure on MPICH: Could not execute 'cd /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8;./configure --prefix=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau CC="/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib" CFLAGS=" -Wall -Wwrite-strings -Wno-strict-aliasing -g3 " --disable-cxx --disable-f77 --disable-f90 --without-mpe --with-pm=gforker --enable-g=meminit --enable-fast': Configuring MPICH2 version 1.0.8 with '--prefix=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/O-hypre-prometheus-tau' 'CC=/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib' 'CFLAGS= -Wall -Wwrite-strings -Wno-strict-aliasing -g3 ' '--disable-cxx' '--disable-f77' '--disable-f90' '--without-mpe' '--with-pm=gforker' '--enable-g=meminit' '--enable-fast' Running on system: Linux vyan2000-linux 2.6.24-24-generic #1 SMP Wed Apr 15 15:54:25 UTC 2009 i686 GNU/Linux Executing mpich2prereq in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8/src/mpid/ch3 with Executing mpich2prereq in /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8/src/mpid/ch3/channels/sock sourcing /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/externalpackages/mpich2-1.0.8/src/pm/gforker/mpich2prereq checking for gcc... /home/vyan2000/local/PPETSc/petsc-3.0.0-p5/bin/taucc.py -cc=gcc -pdt_parse=/home/vyan2000/local/TAU/pdtoolkit-3.6/linux/bin/cxxparse -tau_lib_dir=/home/vyan2000/local/TAU/tau-2.18.2p2/i386_linux/lib checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... configure: error: cannot compute suffix of executables: cannot compile and link See `config.log' for more details. ********************************************************************************* File "./configure", line 217, in petsc_configure framework.configure(out = sys.stdout) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/framework.py", line 902, in configure child.configure() File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/package.py", line 448, in configure self.executeTest(self.configureLibrary) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/base.py", line 97, in executeTest ret = apply(test, args,kargs) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/MPI.py", line 684, in configureLibrary config.package.Package.configureLibrary(self) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/package.py", line 392, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/package.py", line 200, in generateGuesses d = self.checkDownload(1) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/MPI.py", line 299, in checkDownload return config.package.Package.checkDownload(self, requireDownload) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/package.py", line 277, in checkDownload return self.getInstallDir() File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/package.py", line 162, in getInstallDir return os.path.abspath(self.Install()) File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/MPI.py", line 313, in Install return self.InstallMPICH() File "/home/vyan2000/local/PPETSc/petsc-3.0.0-p5/config/BuildSystem/config/packages/MPI.py", line 507, in InstallMPICH raise RuntimeError('Error running configure on MPICH: '+str(e))